These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6904#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 943 fasta sequence [CTCCAGGCCAANAATTCGGCACGAGGCGTGATCTCATTGGATCACACTCGGTCATATAGTTACTGATTTCATGTTGAAAATGAACAAGGAATACTTGACGTGGTTGACTTCTGACGGTACTTTTCGTTTGTCTATCTCAACTCCAGATTCTTGGACTAAACCCACTGATGATTGCCCTTTCACAGTCTTATCCGATCCTGGGCTAAGATTTTGCTTACTAACAGCCAGTTTTTTATTGGCTTTCCCTTATGACAATTTTATTTCGAATCATTTATTATTCGATAGTTCAGTATCGTCGCGTTTATCATCATCTACTTGTGTATCACGCCTTCAGATAATGAAAAAGTTAACAGAAGATGTAAAACTATTACCTACAACTCTCACTGAATTACGTTTGCTACGGAATACATTGCAGTCTTTAATGAATACAAACAGAAATCTCTGGTGTACAGGTTGTGTAGAGCAAAAGTGACATGTTATTTACACTTTTGATAAACCCTTTTATCTAGGTATATTCCTCTTTTCTAACCAGGATTCCTATTGAATCTAACGTTCAGTTTCTTATTGGTTATATGATGCACTATTTTCTTTGTCACCAACCATGTTTTCTAACTCTATTTAGTGACATATATGACTGTGAAATAATGGATAAGCGTTGCAGCTCAGGTGGATGCTNTCATTGTCGTTATGGACCACATCAGCGCCTACTCCACATANNACGGGCATGAAAGCTCCGCAATTAAACTATCTAGCTTANNACATACANAGCACCCCCATACATATTATNNTCTTGNNTATTCCAAATTACCTGTTTATTTCTANATTAGAATAAAAAATATTTCTTTTTATAATATATCACGTTATTGGCTTANTTGATGTCTGGTACAATCTAATACCTTACTGCTTGCTCTGGCTCTATAAATGATTCTGTGATAGATTATTG] [+] EMBL CD079837 [CTCCAGGCCAANAATTCGGCACGAGGCGTGATCTCATTGGATCACACTCGGTCATATAGTTACTGATTTCATGTTGAAAATGAACAAGGAATACTTGACGTGGTTGACTTCTGACGGTACTTTTCGTTTGTCTATCTCAACTCCAGATTCTTGGACTAAACCCACTGATGATTGCCCTTTCACAGTCTTATCCGATCCTGGGCTAAGATTTTGCTTACTAACAGCCAGTTTTTTATTGGCTTTCCCTTATGACAATTTTATTTCGAATCATTTATTATTCGATAGTTCAGTATCGTCGCGTTTATCATCATCTACTTGTGTATCACGCCTTCAGATAATGAAAAAGTTAACAGAAGATGTAAAACTATTACCTACAACTCTCACTGAATTACGTTTGCTACGGAATACATTGCAGTCTTTAATGAATACAAACAGAAATCTCTGGTGTACAGGTTGTGTAGAGCAAAAGTGACATGTTATTTACACTTTTGATAAACCCTTTTATCTAGGTATATTCCTCTTTTCTAACCAGGATTCCTATTGAATCTAACGTTCAGTTTCTTATTGGTTATATGATGCACTATTTTCTTTGTCACCAACCATGTTTTCTAACTCTATTTAGTGACATATATGACTGTGAAATAATGGATAAGCGTTGCAGCTCAGGTGGATGCTNTCATTGTCGTTATGGACCACATCAGCGCCTACTCCACATANNACGGGCATGAAAGCTCCGCAATTAAACTATCTAGCTTANNACATACANAGCACCCCCATACATATTATNNTCTTGNNTATTCCAAATTACCTGTTTATTTCTANATTAGAATAAAAAATATTTCTTTTTATAATATATCACGTTATTGGCTTANTTGATGTCTGGTACAATCTAATACCTTACTGCTTGCTCTGGCTCTATAAATGATTCTGTGATAGATTATTG] [+] EMBL CD189010 [ TTACTGATTTCATGTTGAAAATGAACAAGGAATACTTGACGTGGTTGACTTCTGACGGTACTTTTCGTTTGTCTATCTCAACTCCAGATTCTTGGACTAAACCCACTGATGATTGCCCTTTCACAGTCTTATCCGATCCTGGGCTAAGATTTTGCTTACTAACAGCCAGTTTTTTATTGGCTTTCCCTTATGACAATTTTATTTCGAATCATTTATTATTCGATAGTTCAGTATCGTCGCGTTTATCATCATCTACTTGTGTATCACGCCTTCAGATAATGAAAAAGTTAACAGAAGATGTAAAACTATTACCTACAACTCTCACTGAATTACGTTTGCTACGGAATACATTGCAGTCTTTAATGAATACAAACAGAAATCTCTGGTGTACAGGTTGTGTAGAGCAAAAGTGACATGTTATTTACACTTTTGATAAACCCTTTTATCTAGGTATATTCC ] consensusID : consensus_6904#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 573 fasta sequence [GCAGTCCTTAATGAATACAAACAGAAATCTCTGGTGTACAGGTTGTGTAGAGCAAAAGTGACATGTTATTTACACTTTTGATAAACCCTTTTATCTAGGTATATTCCTCTTTTCTAACCAGGATTCCTATTGAATCTAACGTTCAGTTTCTTATTGGTTATATGATGCACTATTTTCTTTGTCACCAACCATGTTTTCTAACTCTATTTAGTGACATATATGACTGTGAAATAATGGATAAGCGTTGCAGCTCAGGTGGATGCTTTCATTGTCGTTATGGACAACATCAGCGCCTACTCCACATAAAACGGCAATGAAAGCTCCGCAATTAAACTATCTAGCTTAAACAATACAAAGCACCCAATAACATATTATTTCTTGTTAATTCCAAATTTACCTGTTTATTTACTAGATTAAGAATAAAAAATTATTTTCTTTTTTATAATAATTATCGCGTTTATTGGCTTACTTGATTGGTCTGTGTACAAATTCTAAATACGCGTTTACTGTCTTTGCTCTGGGTCTCTTTATCAGAATTGATTTTCTGTTGTATAAGATTTAATATGAATAAAT] [-] EMBL AI975482 [GCAGTCCTTAATGAATACAAACAGAAATCTCTGGTGTACAGGTTGTGTAGAGCAAAAGTGACATGTTATTTACACTTTTGATAAACCCTTTTATCTAGGTATATTCCTCTTTTCTAACCAGGATTCCTATTGAATCTAACGTTCAGTTTCTTATTGGTTATATGATGCACTATTTTCTTTGTCACCAACCATGTTTTCTAACTCTATTTAGTGACATATATGACTGTGAAATAATGGATAAGCGTTGCAGCTCAGGTGGATGCTTTCATTGTCGTTATGGACAACATCAGCGCCTACTCCACATAAAACGGCAATGAAAGCTCCGCAATTAAACTATCTAGCTTAAACAATACAAAGCACCCAATAACATATTATTTCTTGTTAATTCCAAATTTACCTGTTTATTTACTAGATTAAGAATAAAAAATTATTTTCTTTTTTATAATAATTATCGCGTTTATTGGCTTACTTGATTGGTCTGTGTACAAATTCTAAATACGCGTTTACTGTCTTTGCTCTGGGTCTCTTTATCAGAATTGATTTTCTGTTGTATAAGATTTAATATGAATAAAT] [+] EMBL CD145106 [ TATTGAATCTAACGTTCAGTTTCTTATTGGTTATATGATGCACTATTTTCTTTGTCACCAACCATGTTTTCTAACTCTATTTAGTGACATATATGACTGTGAAATAATGGATAAGCGTTGCAGCTCAGGTGGATGCTTTCATTGTCGTTATGGACAACATCAGCGCCTACTCCACATAAAACGGCAATGAAAGCTCCGCAATTAAACTATCTAGCTTANACAATACAAAACACCCAATAACATATTATTTCCTGGTAATTCCAAAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6904#0 CTCCAGGCCAANAATTCGGCACGAGGCGTGATCTCATTGGATCACACTCGGTCATATAGT 60 consensus_6904#1 ------------------------------------------------------------ consensus_6904#0 TACTGATTTCATGTTGAAAATGAACAAGGAATACTTGACGTGGTTGACTTCTGACGGTAC 120 consensus_6904#1 ------------------------------------------------------------ consensus_6904#0 TTTTCGTTTGTCTATCTCAACTCCAGATTCTTGGACTAAACCCACTGATGATTGCCCTTT 180 consensus_6904#1 ------------------------------------------------------------ consensus_6904#0 CACAGTCTTATCCGATCCTGGGCTAAGATTTTGCTTACTAACAGCCAGTTTTTTATTGGC 240 consensus_6904#1 ------------------------------------------------------------ consensus_6904#0 TTTCCCTTATGACAATTTTATTTCGAATCATTTATTATTCGATAGTTCAGTATCGTCGCG 300 consensus_6904#1 ------------------------------------------------------------ consensus_6904#0 TTTATCATCATCTACTTGTGTATCACGCCTTCAGATAATGAAAAAGTTAACAGAAGATGT 360 consensus_6904#1 ------------------------------------------------------------ consensus_6904#0 AAAACTATTACCTACAACTCTCACTGAATTACGTTTGCTACGGAATACATTGCAGTCTTT 420 consensus_6904#1 ---------------------------------------------------GCAGTCCTT 9 ****** ** consensus_6904#0 AATGAATACAAACAGAAATCTCTGGTGTACAGGTTGTGTAGAGCAAAAGTGACATGTTAT 480 consensus_6904#1 AATGAATACAAACAGAAATCTCTGGTGTACAGGTTGTGTAGAGCAAAAGTGACATGTTAT 69 ************************************************************ consensus_6904#0 TTACACTTTTGATAAACCCTTTTATCTAGGTATATTCCTCTTTTCTAACCAGGATTCCTA 540 consensus_6904#1 TTACACTTTTGATAAACCCTTTTATCTAGGTATATTCCTCTTTTCTAACCAGGATTCCTA 129 ************************************************************ consensus_6904#0 TTGAATCTAACGTTCAGTTTCTTATTGGTTATATGATGCACTATTTTCTTTGTCACCAAC 600 consensus_6904#1 TTGAATCTAACGTTCAGTTTCTTATTGGTTATATGATGCACTATTTTCTTTGTCACCAAC 189 ************************************************************ consensus_6904#0 CATGTTTTCTAACTCTATTTAGTGACATATATGACTGTGAAATAATGGATAAGCGTTGCA 660 consensus_6904#1 CATGTTTTCTAACTCTATTTAGTGACATATATGACTGTGAAATAATGGATAAGCGTTGCA 249 ************************************************************ consensus_6904#0 GCTCAGGTGGATGCTNTCATTGTCGTTATGGACCACATCAGCGCCTACTCCACATANNAC 720 consensus_6904#1 GCTCAGGTGGATGCTTTCATTGTCGTTATGGACAACATCAGCGCCTACTCCACATAAAAC 309 *************** ***************** ********************** ** consensus_6904#0 GGGCATGAAAGCTCCGCAATTAAACTATCTAGCTTANNACATACANAGCACCCCCATACA 780 consensus_6904#1 GGCAATGAAAGCTCCGCAATTAAACTATCTAGCTTAAACAATACAAAGCACCCAATAACA 369 ** ******************************** ***** ******* *** consensus_6904#0 TATTATNNTCTTGNNTATTCCAAATT-ACCTGTTTATTT-CTANATTA-GAATAAAAAAT 837 consensus_6904#1 TATTATTT-CTTGTTAATTCCAAATTTACCTGTTTATTTACTAGATTAAGAATAAAAAAT 428 ****** **** ********** ************ *** **** *********** consensus_6904#0 A---TTTCTTTTTATAATA--TATCACGTT-ATTGGCTTANTTGAT--GTCTG-GTACAA 888 consensus_6904#1 TATTTTCTTTTTTATAATAATTATCGCGTTTATTGGCTTACTTGATTGGTCTGTGTACAA 488 ** *********** **** **** ********* ***** ***** ****** consensus_6904#0 TCT---AATAC---CTTACTGC--TTGCTCTGGCTCTAT-------AAATGATT--CTGT 931 consensus_6904#1 ATTCTAAATACGCGTTTACTGTCTTTGCTCTGGGTCTCTTTATCAGAATTGATTTTCTGT 548 * ***** ****** ********* *** * ** ***** **** consensus_6904#0 GATAGATTATTG------------- 943 consensus_6904#1 TGTATAAGATTTAATATGAATAAAT 573 ** * *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||