These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6924#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 787 fasta sequence [GGAGCCATANCGGCACGAGCGCTTAACGTCGCTTTTGGATGATAGTTATGGACGTCAGTGCCGATAAATCACCATTAATTCAACCTGAAGATACTTCGAACAAACCCAGTCTTCCTTCTATTACAGTTATCAAACCAAAACATCCAAGGCGCTATAAACTTTTACCAAAAGATAAACTCCGTTTCCCTAAAAATGATACTTCAAATCAATTTTGGCGTACAGGTGATTATACAAAACATATGCCTCTTATCAATGTAAATTGTGATGACGATAGTGAAGAGTTTGATGGCGCATTATTTCAAAAAGTTGCCAATAAAGGCTTATGTGATTATTTAAAAAATGATCGACTGTCGTCTCATAATCGATCAAATTTAACAAATACTCATACTTATGATGATTGGGATTTGCATCTTTCAACACCCGTTCAACGTAGAACACANATTTGTTGTCCATTCAGTTGTACATTATCATGAATTTTTTTAGGAGATAATGCTTTGGAGATTCCCCTCTTTCTTTAATTTATTAGTTCTTTCCTATTATTTTGTGTTAATCATAATGCATTTTTGTAAACTTTTCCATTGTGCATTTCCACTTTGCCCATGTTTAACATATTTCTCGGGCTCTCTATTCTCAACTGCTTTAATGCTTTAGCATATTTTATCCGTCCTAACATTTTTTTATATCTACCCACTAACCTTGATTATATATGAAATTTATAGAAGAATCAATGGTGTAATTTCTCCTTCGTTGCATTATTAACTTTGGAAAAAAAAAATACCCGAAATTT] [+] EMBL CD081712 [GGAGCCATANCGGCACGAGCGCTTAACGTCGCTTTTGGATGATAGTTATGGACGTCAGTGCCGATAAATCACCATTAATTCAACCTGAAGATACTTCGAACAAACCCAGTCTTCCTTCTATTACAGTTATCAAACCAAAACATCCAAGGCGCTATAAACTTTTACCAAAAGATAAACTCCGTTTCCCTAAAAATGATACTTCAAATCAATTTTGGCGTACAGGTGATTATACAAAACATATGCCTCTTATCAATGTAAATTGTGATGACGATAGTGAAGAGTTTGATGGCGCATTATTTCAAAAAGTTGCCAATAAAGGCTTATGTGATTATTTAAAAAATGATCGACTGTCGTCTCATAATCGATCAAATTTAACAAATACTCATACTTATGATGATTGGGATTTGCATCTTTCAACACCCGTTCAACGTAGAACACANATTTGTTGTCCATTCAGTTGTACATTATCATGAATTTTTTTAGGAGATAATGCTTTGGAGATTCCCCTCTTTCTTTAATTTATTAGTTCTTTCCTATTATTTTGTGTTAATCATAATGCATTTTTGTAAACTTTTCCATTGTGCATTTCCACTTTGCCCATGTTTAACATATTTCTCGGGCTCTCTATTCTCAACTGCTTTAATGCTTTAGCATATTTTATCCGTCCTAACATTTTTTTATATCTACCCACTAACCTTGATTATATATGAAATTTATAGAAGAATCAATGGTGTAATTTCTCCTTCGTTGCATTATTAACTTTGGAAAAAAAAAATACCCGAAATTT] [-] EMBL BG930530 [ TTGGCGTACAGGTGATTATACAAAACATATGCTTCTTATCAATGTAAATTGTGATGACGATAGTGAAGAATTTGATGGCGCATTATTTCAAAAAGTTGCCAATAAAGGCTTATGTGATTATTTAAAAAATGATCGACTGTCGTCTCATAATCGATCAAATTTAACAAATACTCATACTTATGATGATTGGGATTTGCATCTTTCAACACCCGTTCAACGTAGAACACAAATTTGTTGTCCATTCAGTTGTACATTATCATGAATTTTTTTAGGAGATAATGCTTTGGAGAg ] consensusID : consensus_6924#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence [TCTACAAAAGGCTCAATTTTCTCATCACACTTAACGTCGCTTTTGGATGATAGTTATGGACGTCAGTGCCGATAAATCACCATTAATTCAACCTGAAGATACTTCGAACAAACCCAGTCTTCCTTCTATTACAGTTATCAAACCAAAACATCCAAGGCGCTATAAACTTTTACCAAAAGATAAACTCCGTTTCCCTAAAAATGATACTTCAAATCAATTTTGGCGTACAGGTGATTATACGAAACATATGCCTCTTATCAATGTAAATTGTGATGACGATAGTGAAGAGTTTGATGGCGCATTATTTCAAAAAGTTGCCAATAAAGGCTTATGTGATTATTTAAAAAATGATCGACTGTCGTCTCATAATCGATCAAATTTAACAAATACTCATACTTATGATGATTGGGATTTGCATCTTTCAACACCCGTTCAACGTAGAACACAAATTTGTTGTCCATTCAGTTGTACATTATCATGAATTTTTTTTAGGAGATAATGCTTTGGAGATTTCCCTCTTTCTTTAATTTATTAGNTCTTTTCCTATTATTTTGTGTTAAACATAATGCATTTTTGTAACTTTTCCATTGGGCATTTCCACTTTGCCCATGTTTAACATATTTCTCGGGCCTCTCTATTCT] [+] EMBL AI977212 [TCTACAAAAGGCTCAATTTTCTCATCACACTTAACGTCGCTTTTGGATGATAGTTATGGACGTCAGTGCCGATAAATCACCATTAATTCAACCTGAAGATACTTCGAACAAACCCAGTCTTCCTTCTATTACAGTTATCAAACCAAAACATCCAAGGCGCTATAAACTTTTACCAAAAGATAAACTCCGTTTCCCTAAAAATGATACTTCAAATCAATTTTGGCGTACAGGTGATTATACGAAACATATGCCTCTTATCAATGTAAATTGTGATGACGATAGTGAAGAGTTTGATGGCGCATTATTTCAAAAAGTTGCCAATAAAGGCTTATGTGATTATTTAAAAAATGATCGACTGTCGTCTCATAATCGATCAAATTTAACAAATACTCATACTTATGATGATTGGGATTTGCATCTTTCAACACCCGTTCAACGTAGAACACAAATTTGTTGTCCATTCAGTTGTACATTATCATGAATTTTTTTTAGGAGATAATGCTTTGGAGATTTCCCTCTTTCTTTAATTTATTAGNTCTTTTCCTATTATTTTGTGTTAAACATAATGCATTTTTGTAACTTTTCCATTGGGCATTTCCACTTTGCCCATGTTTAACATATTTCTCGGGCCTCTCTATTCT] consensusID : consensus_6924#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [ACTAATACAAAAGGCTCAATTTTCTCATCACACTTAACGTCGCTTTTGGATGATAGTTATGGACGTCAGTGCCGATAAATCACCATTAATTCAACCTGAAGATACTTCGAACAAACCCAGTCTTCCTTCTATTACAGTTATCAAACCAAAACATCCAAGGCGCTATAAACTTTTACCAAAAGATAAACTCCGTTTCCCTAAAAATGATACTTCAAATCAATTTTGGCGTACAGGTGATTATACAAAACATATGCCTCTTATCAATGTAAATTGTGATGACGATAGTTATCATATTCTTTCCGTTTTTACAGTGAAGAGTTTGATGGCGCATTATTTCAAAAAGTTGCCAATAAAGGCTTATGTGATTATTTAAAAAATGATCGACTGTCGTCTCATAATCGATCAAATTTAACAAATACTCATACTTATGATGATTGGGAC] [-] EMBL BG930807 [ACTAATACAAAAGGCTCAATTTTCTCATCACACTTAACGTCGCTTTTGGATGATAGTTATGGACGTCAGTGCCGATAAATCACCATTAATTCAACCTGAAGATACTTCGAACAAACCCAGTCTTCCTTCTATTACAGTTATCAAACCAAAACATCCAAGGCGCTATAAACTTTTACCAAAAGATAAACTCCGTTTCCCTAAAAATGATACTTCAAATCAATTTTGGCGTACAGGTGATTATACAAAACATATGCCTCTTATCAATGTAAATTGTGATGACGATAGTTATCATATTCTTTCCGTTTTTACAGTGAAGAGTTTGATGGCGCATTATTTCAAAAAGTTGCCAATAAAGGCTTATGTGATTATTTAAAAAATGATCGACTGTCGTCTCATAATCGATCAAATTTAACAAATACTCATACTTATGATGATTGGGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6924#0 ------------GGAGCCATANCGGCACGAGCGCTTAACGTCGCTTTTGGATGATAGTTA 48 consensus_6924#1 ---TCTACAAAAGGCTCAATTTTCTCATCA-CACTTAACGTCGCTTTTGGATGATAGTTA 56 consensus_6924#2 ACTAATACAAAAGGCTCAATTTTCTCATCA-CACTTAACGTCGCTTTTGGATGATAGTTA 59 ** * ** ** * * *************************** consensus_6924#0 TGGACGTCAGTGCCGATAAATCACCATTAATTCAACCTGAAGATACTTCGAACAAACCCA 108 consensus_6924#1 TGGACGTCAGTGCCGATAAATCACCATTAATTCAACCTGAAGATACTTCGAACAAACCCA 116 consensus_6924#2 TGGACGTCAGTGCCGATAAATCACCATTAATTCAACCTGAAGATACTTCGAACAAACCCA 119 ************************************************************ consensus_6924#0 GTCTTCCTTCTATTACAGTTATCAAACCAAAACATCCAAGGCGCTATAAACTTTTACCAA 168 consensus_6924#1 GTCTTCCTTCTATTACAGTTATCAAACCAAAACATCCAAGGCGCTATAAACTTTTACCAA 176 consensus_6924#2 GTCTTCCTTCTATTACAGTTATCAAACCAAAACATCCAAGGCGCTATAAACTTTTACCAA 179 ************************************************************ consensus_6924#0 AAGATAAACTCCGTTTCCCTAAAAATGATACTTCAAATCAATTTTGGCGTACAGGTGATT 228 consensus_6924#1 AAGATAAACTCCGTTTCCCTAAAAATGATACTTCAAATCAATTTTGGCGTACAGGTGATT 236 consensus_6924#2 AAGATAAACTCCGTTTCCCTAAAAATGATACTTCAAATCAATTTTGGCGTACAGGTGATT 239 ************************************************************ consensus_6924#0 ATACAAAACATATGCCTCTTATCAATGTAAATTGTGATGACGATAGT------------- 275 consensus_6924#1 ATACGAAACATATGCCTCTTATCAATGTAAATTGTGATGACGATAGT------------- 283 consensus_6924#2 ATACAAAACATATGCCTCTTATCAATGTAAATTGTGATGACGATAGTTATCATATTCTTT 299 **** ****************************************** consensus_6924#0 -------------GAAGAGTTTGATGGCGCATTATTTCAAAAAGTTGCCAATAAAGGCTT 322 consensus_6924#1 -------------GAAGAGTTTGATGGCGCATTATTTCAAAAAGTTGCCAATAAAGGCTT 330 consensus_6924#2 CCGTTTTTACAGTGAAGAGTTTGATGGCGCATTATTTCAAAAAGTTGCCAATAAAGGCTT 359 *********************************************** consensus_6924#0 ATGTGATTATTTAAAAAATGATCGACTGTCGTCTCATAATCGATCAAATTTAACAAATAC 382 consensus_6924#1 ATGTGATTATTTAAAAAATGATCGACTGTCGTCTCATAATCGATCAAATTTAACAAATAC 390 consensus_6924#2 ATGTGATTATTTAAAAAATGATCGACTGTCGTCTCATAATCGATCAAATTTAACAAATAC 419 ************************************************************ consensus_6924#0 TCATACTTATGATGATTGGGATTTGCATCTTTCAACACCCGTTCAACGTAGAACACANAT 442 consensus_6924#1 TCATACTTATGATGATTGGGATTTGCATCTTTCAACACCCGTTCAACGTAGAACACAAAT 450 consensus_6924#2 TCATACTTATGATGATTGGGAC-------------------------------------- 441 ********************* consensus_6924#0 TTGTTGTCCATTCAGTTGTACATTATCATGAATTTTTTT-AGGAGATAATGCTTTGGAGA 501 consensus_6924#1 TTGTTGTCCATTCAGTTGTACATTATCATGAATTTTTTTTAGGAGATAATGCTTTGGAGA 510 consensus_6924#2 ------------------------------------------------------------ consensus_6924#0 TTCCCCTCTTTCTTTAATTTATTAGTTCTTT-CCTATTATTTTGTGTTAATCATAATGCA 560 consensus_6924#1 TTTCCCTCTTTCTTTAATTTATTAGNTCTTTTCCTATTATTTTGTGTTAAACATAATGCA 570 consensus_6924#2 ------------------------------------------------------------ consensus_6924#0 TTTTTGTAAACTTTTCCATTGTGCATTTCCACTTTGCCCATGTTTAACATATTTCTCGGG 620 consensus_6924#1 TTTTTGTAA-CTTTTCCATTGGGCATTTCCACTTTGCCCATGTTTAACATATTTCTCGGG 629 consensus_6924#2 ------------------------------------------------------------ consensus_6924#0 C-TCTCTATTCTCAACTGCTTTAATGCTTTAGCATATTTTATCCGTCCTAACATTTTTTT 679 consensus_6924#1 CCTCTCTATTCT------------------------------------------------ 641 consensus_6924#2 ------------------------------------------------------------ consensus_6924#0 ATATCTACCCACTAACCTTGATTATATATGAAATTTATAGAAGAATCAATGGTGTAATTT 739 consensus_6924#1 ------------------------------------------------------------ consensus_6924#2 ------------------------------------------------------------ consensus_6924#0 CTCCTTCGTTGCATTATTAACTTTGGAAAAAAAAAATACCCGAAATTT 787 consensus_6924#1 ------------------------------------------------ consensus_6924#2 ------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||