These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6933#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 640 fasta sequence [AGAAAAATCAAGAGTGGTTCTTTTACCAATTGATGGAAGTGAACATGCTGAACGAGCATTTCAATGGTATTTGACTAATATGAAGAGTTCAAATGATATTGTGAAATTTGTTAATATTGTTGAACCAGTTTATGCTACACCTGCAGTTGGATTAACAATGGAAACTCCACCATTAACTGATATTACTAAAATAATGCAAGATAGCATTGATAAAGGCAAGTTATTGGGTAAAAAATATATAGCTGAAGCAAAAAAATATGATATAAACTGTCAAGCATTTCTTCATGTAGACAATCGACCTGGTGCAGCTTTATTAAAATCAATAGAAGATCATAATGCAAATTTGATTATTATGGGAAGTAGAGGTCTTGGTATACTTCGACGTACTTTTCTTGGAAGTGTTTCTGATTATGTATTACATCATGCTCATATACCAGTGGTAATTGTTCCACCAAAGTAAAAAAAAAGTAACATTGATCATATTTACTCTTTAAATTAAAAAATATGTACCATGTAAGATATATTTTGCCATAATTATACAACATTTTTTTATCATAAAACACTGATTTCATTGTTAAAAAAAGACAGTGTAATATATTCATTCCTATGTNNNANANNNTTTCGAAGGATGTTATAATAA] [+] EMBL CD082511 [AGAAAAATCAAGAGTGGTTCTTTTACCAATTGATGGAAGTGAACATGCTGAACGAGCATTTCAATGGTATTTGACTAATATGAAGAGTTCAAATGATATTGTGAAATTTGTTAATATTGTTGAACCAGTTTATGCTACACCTGCAGTTGGATTAACAATGGAAACTCCACCATTAACTGATATTACTAAAATAATGCAAGATAGCATTGATAAAGGCAAGTTATTGGGTAAAAAATATATAGCTGAAGCAAAAAAATATGATATAAACTGTCAAGCATTTCTTCATGTAGACAATCGACCTGGTGCAGCTTTATTAAAATCAATAGAAGATCATAATGCAAATTTGATTATTATGGGAAGTAGAGGTCTTGGTATACTTCGACGTACTTTTCTTGGAAGTGTTTCTGATTATGTATTACATCATGCTCATATACCAGTGGTAATTGTTCCACCAAAGTAAAAAAAAAGTAACATTGATCATATTTACTCTTTAAATTAAAAAATATGTACCATGTAAGATATATTTTGCCATAATTATACAACATTTTTTTATCATAAAACACTGATTTCATTGTTAAAAAAAGACAGTGTAATATATTCATTCCTATGTNNNANANNN ] [+] EMBL AI021772 [ ATTATTATGGGAAGTAGAGGTCTTGGTATACTTCGACGTACTTTTCTTGGAAGTGTTTCTGATTATGTATTACATCATGCTCATATACCAGTGGTAATTGTTCCACCAAAGTAAAAAAAAAGTAACATTGATCATATTTACTCTTTAAATTAAAAAATATGTACCATGTAAGATATATTTTGCCATAATTATACAACATTTTTTTATCATAAAACACTGATTTCATTGTT AAAAAAGACAGTGTAATATATTCATTCCTATGTATCTGTTTCTTTCGAAGGATGTTATAATAA] consensusID : consensus_6933#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [TACCAATTGGATGGAAGTGAACATGCTGAACGAGCATTTCANTGGGTATTGGACTAATATGAAGAGTTCAAATGATATTGTGAAATTTGTTAATATTGTTGAACCAGTTTATGCTACACCTGCAGTTGGATTAACAATGGAAACTCCACCATTAACTGATATTACTAAAATAATGCAAGATAGCATGGATAAAGGCAAGTTATTGGGTAAAAAATATATAGCTGAAGCAAAAAAATATGATATAAACTGTCAAGCATTTCTTCATGTAGACAATCGACCNGGTGCAGCTTTATTAAAATCAATAGAAGATCATAATGCAAATTGGATTATTATGGGAAGTAGAGGTCTTGGTATTACTTCGACGTACTTTTCTTGGAAGTGTNTCTGATTATGTATTACATCATGCTCATATACCAGNGGTAATGGTCCCACCAANGTAAAAAAAAAGTAACAATGGANCATNTTTACTCTTTAANTTAAAAATNTGTNCCANTTAAGTTNTTTTTGGGCATAATATTCAACATTTNTTNNTCATAAACACGATTCATGGTAAAAAGGCAGGGTATNTTTCANCCCATGTANCTGNTCCTTCGAGGATTTTTATAAAGGTGGT] [+] EMBL SM939 [TACCAATTGGATGGAAGTGAACATGCTGAACGAGCATTTCANTGGGTATTGGACTAATATGAAGAGTTCAAATGATATTGTGAAATTTGTTAATATTGTTGAACCAGTTTATGCTACACCTGCAGTTGGATTAACAATGGAAACTCCACCATTAACTGATATTACTAAAATAATGCAAGATAGCATGGATAAAGGCAAGTTATTGGGTAAAAAATATATAGCTGAAGCAAAAAAATATGATATAAACTGTCAAGCATTTCTTCATGTAGACAATCGACCNGGTGCAGCTTTATTAAAATCAATAGAAGATCATAATGCAAATTGGATTATTATGGGAAGTAGAGGTCTTGGTATTACTTCGACGTACTTTTCTTGGAAGTGTNTCTGATTATGTATTACATCATGCTCATATACCAGNGGTAATGGTCCCACCAANGTAAAAAAAAAGTAACAATGGANCATNTTTACTCTTTAANTTAAAAATNTGTNCCANTTAAGTTNTTTTTGGGCATAATATTCAACATTTNTTNNTCATAAACACGATTCATGGTAAAAAGGCAGGGTATNTTTCANCCCATGTANCTGNTCCTTCGAGGATTTTTATAAAGGTGGT] consensusID : consensus_6933#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 231 fasta sequence [NTGACTAANATGAAGAGTTCANATGATATNGTGATATTGGTTAATATTGTGGAACCAGTTTATGNTACACCTGNAGTTGGNTTAACAACGGAAACTCCACCATNAACTGATATTACTAAAATAATGCAAGATAGCATGGATAAAGGCAAGTNATNGGGTAAANACTATATAGCTGACGCAAAAACNTATGATATANACTGTCAAGNATCTCTTCATGTAGACAATCGANCT] [+] EMBL SM750 [NTGACTAANATGAAGAGTTCANATGATATNGTGATATTGGTTAATATTGTGGAACCAGTTTATGNTACACCTGNAGTTGGNTTAACAACGGAAACTCCACCATNAACTGATATTACTAAAATAATGCAAGATAGCATGGATAAAGGCAAGTNATNGGGTAAANACTATATAGCTGACGCAAAAACNTATGATATANACTGTCAAGNATCTCTTCATGTAGACAATCGANCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6933#0 AGAAAAATCAAGAGTGGTTCTTTTACCAATTG-ATGGAAGTGAACATGCTGAACGAGCAT 59 consensus_6933#1 -----------------------TACCAATTGGATGGAAGTGAACATGCTGAACGAGCAT 37 consensus_6933#2 ------------------------------------------------------------ consensus_6933#0 TTCAATGG-TATTTGACTAATATGAAGAGTTCAAATGATATTGTGAAATTTGTTAATATT 118 consensus_6933#1 TTCANTGGGTATTGGACTAATATGAAGAGTTCAAATGATATTGTGAAATTTGTTAATATT 97 consensus_6933#2 ------------NTGACTAANATGAAGAGTTCANATGATATNGTGATATTGGTTAATATT 48 ****** ************ ******* **** *** ********* consensus_6933#0 GTTGAACCAGTTTATGCTACACCTGCAGTTGGATTAACAATGGAAACTCCACCATTAACT 178 consensus_6933#1 GTTGAACCAGTTTATGCTACACCTGCAGTTGGATTAACAATGGAAACTCCACCATTAACT 157 consensus_6933#2 GTGGAACCAGTTTATGNTACACCTGNAGTTGGNTTAACAACGGAAACTCCACCATNAACT 108 ** ************* ******** ****** ******* ************** **** consensus_6933#0 GATATTACTAAAATAATGCAAGATAGCATTGATAAAGGCAAGTTATTGGGTAAAAAATAT 238 consensus_6933#1 GATATTACTAAAATAATGCAAGATAGCATGGATAAAGGCAAGTTATTGGGTAAAAAATAT 217 consensus_6933#2 GATATTACTAAAATAATGCAAGATAGCATGGATAAAGGCAAGTNATNGGGTAAANACTAT 168 ***************************** ************* ** ******* * *** consensus_6933#0 ATAGCTGAAGCAAAAAAATATGATATAAACTGTCAAGCATTTCTTCATGTAGACAATCGA 298 consensus_6933#1 ATAGCTGAAGCAAAAAAATATGATATAAACTGTCAAGCATTTCTTCATGTAGACAATCGA 277 consensus_6933#2 ATAGCTGACGCAAAAACNTATGATATANACTGTCAAGNATCTCTTCATGTAGACAATCGA 228 ******** ******* ********* ********* ** ******************* consensus_6933#0 CCTGGTGCAGCTTTATTAAAATCAATAGAAGATCATAATGCAAATTTGATTATTATGGGA 358 consensus_6933#1 CCNGGTGCAGCTTTATTAAAATCAATAGAAGATCATAATGCAAATTGGATTATTATGGGA 337 consensus_6933#2 NCT--------------------------------------------------------- 231 * consensus_6933#0 AGTAGAGGTCTTGGTAT-ACTTCGACGTACTTTTCTTGGAAGTGTTTCTGATTATGTATT 417 consensus_6933#1 AGTAGAGGTCTTGGTATTACTTCGACGTACTTTTCTTGGAAGTGTNTCTGATTATGTATT 397 consensus_6933#2 ------------------------------------------------------------ consensus_6933#0 ACATCATGCTCATATACCAGTGGTAATTGTTCCACCAAAGTAAAAAAAAAGTAACATTG- 476 consensus_6933#1 ACATCATGCTCATATACCAGNGGTAATGGTCCCACCAANGTAAAAAAAAAGTAACAATGG 457 consensus_6933#2 ------------------------------------------------------------ consensus_6933#0 ATCATATTTACTCTTTAAATTAAAAAATATGTACCATGTAAGATATATTTTGCCATAATT 536 consensus_6933#1 ANCATNTTTACTCTTTAANTTAAAAA-TNTGTNCCANTTAAGTTNTTTTTGGGCATAAT- 515 consensus_6933#2 ------------------------------------------------------------ consensus_6933#0 ATACAACATTTTTTTATCATAAAACACTGATTTCATTGTTAAAAAAAGACAGTGTAATAT 596 consensus_6933#1 ATTCAACATTTNTTNNTCATAAA-CACGA--TTCATGGT---AAAAAGGCAGGGTA---T 566 consensus_6933#2 ------------------------------------------------------------ consensus_6933#0 ATTCATTCCTATGTNNNANANNNTTTCGAAGGATGTTATAATAA---- 640 consensus_6933#1 NTTTCANCCCATGTANCTGNTCCTT-CGAGGATTTTTATAAAGGTGGT 613 consensus_6933#2 ------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||