These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_697#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 297 fasta sequence [GATTATTTTATTAGAATAATCTCTCTAACCAAACACTGGGCAGAATATTGGACCTCAGACATCCATGCTGGATACTGATTACCGTTTAGCAAAATAAAGCGACTCCAATTAACAGCTTTTTCAAAAGAGTAATCAGTTTTCACAGAAAGCCCAAGAGCTTGAGGTAGGAACGGTCCTCGAACATGATCCACCCAAAGAGTTTCACCATCTACCAAACCAAGACATAAGGGGATAACAGCGATTAGATCTGGGTATTTTGAAAACAAATGCGCACGTTGTGATATGCCCCCACTCAAT] [+] EMBL CD193328 [GATTATTTTATTAGAATAATCTCTCTAACCAAACACTGGGCAGAATATTGGACCTCAGACATCCATGCTGGATACTGATTACCGTTTAGCAAAATAAAGCGACTCCAATTAACAGCTTTTTCAAAAGAGTAATCAGTTTTCACAGAAAGCCCAAGAGCTTGAGGTAGGAACGGTCCTCGAACATGATCCACCCAAAGAGTTTCACCATCTACCAAACCAAGACATAAGGGGATAACAGCGATTAGATCTGGGTATTTTGAAAACAAATGCGCACGTTGTGATATGCCCCCACTCAAT] consensusID : consensus_697#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [CCCACCATAGAGGACTGAAAAGACTGGGGCGAATAAGGTCACTGTTATACTTTAGTTCGTTGGGAAAGAGACCAGAGGAGACTAGAATAATCTCTCTAACCAAACACTGGGCAGAATATTGGACCTCAGACATCCATGCTGGATACTGATTACCGTTTAGCAAAATAAAGCGACTCCAATTAACAGCTTTTTCAAAAGAGTAATCAGTTTTCACAGAAAGCCCAAGAGCTTGAGGTAGGAACGGTCCTCGAACATGATCCACCCAAAGAGT] [-] EMBL CD158201 [CCCACCATAGAGGACTGAAAAGACTGGGGCGAATAAGGTCACTGTTATACTTTAGTTCGTTGGGAAAGAGACCAGAGGAGACTAGAATAATCTCTCTAACCAAACACTGGGCAGAATATTGGACCTCAGACATCCATGCTGGATACTGATTACCGTTTAGCAAAATAAAGCGACTCCAATTAACAGCTTTTTCAAAAGAGTAATCAGTTTTCACAGAAAGCCCAAGAGCTTGAGGTAGGAACGGTCCTCGAACATGATCCACCCAAAGAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_697#0 ------------------------------------------------------------ consensus_697#1 CCCACCATAGAGGACTGAAAAGACTGGGGCGAATAAGGTCACTGTTATACTTTAGTTCGT 60 consensus_697#0 ---------GATTATTTTA--TTAGAATAATCTCTCTAACCAAACACTGGGCAGAATATT 49 consensus_697#1 TGGGAAAGAGACCAGAGGAGACTAGAATAATCTCTCTAACCAAACACTGGGCAGAATATT 120 ** * * ************************************** consensus_697#0 GGACCTCAGACATCCATGCTGGATACTGATTACCGTTTAGCAAAATAAAGCGACTCCAAT 109 consensus_697#1 GGACCTCAGACATCCATGCTGGATACTGATTACCGTTTAGCAAAATAAAGCGACTCCAAT 180 ************************************************************ consensus_697#0 TAACAGCTTTTTCAAAAGAGTAATCAGTTTTCACAGAAAGCCCAAGAGCTTGAGGTAGGA 169 consensus_697#1 TAACAGCTTTTTCAAAAGAGTAATCAGTTTTCACAGAAAGCCCAAGAGCTTGAGGTAGGA 240 ************************************************************ consensus_697#0 ACGGTCCTCGAACATGATCCACCCAAAGAGTTTCACCATCTACCAAACCAAGACATAAGG 229 consensus_697#1 ACGGTCCTCGAACATGATCCACCCAAAGAGT----------------------------- 271 ******************************* consensus_697#0 GGATAACAGCGATTAGATCTGGGTATTTTGAAAACAAATGCGCACGTTGTGATATGCCCC 289 consensus_697#1 ------------------------------------------------------------ consensus_697#0 CACTCAAT 297 consensus_697#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||