These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6987#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 827 fasta sequence [GCACTGTGCGGTTTGATCTGCGCTGTGGGTGTCGTCGATGACCTGCTCGACCTTCCTGCCTTGGCCAAGGCAACTGGCCAGGTATTAGCGGCCGGCATCGTCGTCACGGGCGGAGTGCGAATGTTTTGGATCCCGCTGCCGAACTCCATCATTGCTTTGGGGACGCCTACTTCGATCTTGGTGACGGTGTTCTTCATTGTGTTGTGCGCCAATGCGGTGAATCTCATCGATGGACTTGACGGCCTGGCATCCGGTGTGGTGGCCATCGGGTCCTTGGCTTTCTTCTCATACACCTACCTGCTGGCTCACGAACAGGACTTTGTTGTTGCGACGACTACCAGTCTCATTACGGCTGCGACGGCGGGCGCCTGTCTCG-GTTTTTGCCCCACAACTGGCATCCGGCGAGGATGTTCATGGGTGATTCCGGAGCTCTGCTACTTGGCTTATTGCTAGCTACCTCGACGATCTCGTTGACCGGACAGATCGATTCGACGGCTCTGACAGCACGGGGGCGGCGGATTGGTCCCCGCTTACTTGCCAATCGTCGTGCCACTGATGGTGCTGGCCATCCCTTTTCTGGACCTTGTCATGGGCTATGTCCGGAGGACATGGCGAGGGACGTGGTTCTTCGTTGCGGACAATGCAACACCTTCATCACCGCTTATTGCAACGAGGCCACTCTCACATGCGGGCTGTCTTGCTGATGTATCTATGGACCACCGTGCTCACCTTTGGGACGGTGTTTATTGGCCTGGAACAAACATGGTGGACGATCGTAATCGTGGTAACGGGACCTCGGAATGTGCGCTACTCCTCACTATGGCGAA] [+] EMBL CD087696 [GCACTGTGCGGTTTGATCTGCGCTGTGGGTGTCGTCGATGACCTGCTCGACCTTCCTGCCTTGGCCAAGGCAACTGGCCAGGTATTAGCGGCCGGCATCGTCGTCACGGGCGGAGTGCGAATGTTTTGGATCCCGCTGCCGAACTCCATCATTGCTTTGGGGACGCCTACTTCGATCTTGGTGACGGTGTTCTTCATTGTGTTGTGCGCCAATGCGGTGAATCTCATCGATGGACTTGACGGCCTGGCATCCGGTGTGGTGGCCATCGGGTCCTTGGCTTTCTTCTCATACACCTACCTGCTGGCTCACGAACAGGACTTTGTTGTTGCGACGACTACCAGTCTCATTACGGCTGCGACGGCGGGCGCCTGTCTCG GTTTTTGCCCCACAACTGGCATCCGGCGAGGATGTTCATGGGTGATTCCGGAGCTCTGCTACTTGGCTTATTGCTAGCTACCTCGACGATCTCGTTGACCGGACAGATCGATTCGACGGCTCTGACAGCACGGGGGCGGCGGATTGGTCCCC ] [-] EMBL CD112550 [ TGTCTCGCTTTTTTGCCCCACAACCGGCATCCGGCGAGGATGTTCATGGGTGATTCCGGAGCTCTGCTACTTGGCTTATTGCTAGCTACCTCGACGATCTCGTTGACCGGACAGATCGATTCGACGGCTCTGACAGCAC GGGGCGGCGGATTGGTCCCCGCTTACTTGCCAATCGTCGTGCCACTGATGGTGCTGGCCATCCCTTTTCTGGACCTTGTCATGGGCTATGTCCGGAGGACATGGCGAGGGACGTGGTTCTTCGTTGCGGACAATGCAACACCTTCATCACCGCTTATTGCAACGAGGCCACTCTCACATGCGGGCTGTCTTGCTGATGTATCTATGGACCACCGTGCTCACCTTTGGGACGGTGTTTATTGGCCTGGAACAAACATGGTGGACGATCGTAATCGTGGTAACGGGACCTCGGAATGTGCGCTACTCCTCACTATGGCGAA] consensusID : consensus_6987#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 423 fasta sequence [CGGCTGGGGGGAGTGGCCTTGGCGTGTCTGCTGGCCCGCAATATGCCTTTCCTGGGCCGCCATCTTCTGGTTGCTGACGACGCGTTGACGATCTGTCTGGCTGGTGTAGTGATCTGCGCTGTGGGTGTCGTCGATGACCTGCTCGACCTTGCTGCCTTGGCCAAGGCAGCTGGCCAGGTATTAGCGGCCGGCATCGTCGTCACGGGCGGAGTGCGAATGTTTTGGATCCCGCTGCCGAACTCCATCATTGCTTTGGGGACGCCTACTTCGATCTTGGTGACGGAGTTCTTCATTGTGTTGTGCGCCAATGCGGTGAATTTCA-TTGATGGACTTGACGGCCTGGCATCCGGTGTGGTGGCCATCGGGTCCTTGGCTTTCTTCTCATACACCTACCTGCTGGCTCACGAACAGGACTTTGTTGTT] [+] EMBL CD087686 [CGGCTGGGGGGAGTGGCCTTGGCGTGTCTGCTGGCCCGCAATATGCCTTTCCTGGGCCGCCATCTTCTGGTTGCTGACGACGCGTTGACGATCTGTCTGGCTGGTGTAGTGATCTGCGCTGTGGGTGTCGTCGATGACCTGCTCGACCTTGCTGCCTTGGCCAAGGCAGCTGGCCAGGTATTAGCGGCCGGCATCGTCGTCACGGGCGGAGTGCGAATGTTTTGGATCCCGCTGCCGAACTCCATCATTGCTTTGGGGACGCCTACTTCGATCTTGGTGACGGAGTTCTTCATTGTGTTGTGCGCCAATGCGGTGAATTTCA TTGATGGACTTGACGGCCTGGCATCCGGTGTGGTGGCCATCGGGTCCTTGGCTTTCTTCTCATACACCTACCTGCTGGCTCACGAACAGGACTTTGTTGTT] [+] EMBL CD150603 [ ccatgTATG ATTTCCTGGGCCGCCATCTTCTGGTTGCTGACGACGCGTTGACGATCTGTCTGGCTGGTGTAGTGATCTGCGCTGTGGGTGTCGTCGATGACCTGCTCGACCTTCCTGCCTTGGCCAAGGCAGCTGGCCAGGTATTAGCGGCCGGCATCGTCGTCACGGGCGGAGTGCGAATGTTTTGGATCCCGCTGCCGAACTCCATCATTGCTTTGGGGACGCCTACTTCGATCTTGGTGACGGTGTTCTTCATTGTGTTGTGCGCCAATGCGGTGAATTTCATTTGATGGACTTGACGGCCTGGCATCCGGTGTGGTGGCCATCGGGTCCTTGGCTTTCTTCTCATACACCTACCTGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6987#0 ------------------------------------------------------------ consensus_6987#1 CGGCTGGGGGGAGTGGCCTTGGCGTGTCTGCTGGCCCGCAATATGCCTTTCCTGGGCCGC 60 consensus_6987#0 -----------------------------GCACTGTGCGGTT-------TGATCTGCGCT 24 consensus_6987#1 CATCTTCTGGTTGCTGACGACGCGTTGACGATCTGTCTGGCTGGTGTAGTGATCTGCGCT 120 * **** ** * *********** consensus_6987#0 GTGGGTGTCGTCGATGACCTGCTCGACCTTCCTGCCTTGGCCAAGGCAACTGGCCAGGTA 84 consensus_6987#1 GTGGGTGTCGTCGATGACCTGCTCGACCTTGCTGCCTTGGCCAAGGCAGCTGGCCAGGTA 180 ****************************** ***************** *********** consensus_6987#0 TTAGCGGCCGGCATCGTCGTCACGGGCGGAGTGCGAATGTTTTGGATCCCGCTGCCGAAC 144 consensus_6987#1 TTAGCGGCCGGCATCGTCGTCACGGGCGGAGTGCGAATGTTTTGGATCCCGCTGCCGAAC 240 ************************************************************ consensus_6987#0 TCCATCATTGCTTTGGGGACGCCTACTTCGATCTTGGTGACGGTGTTCTTCATTGTGTTG 204 consensus_6987#1 TCCATCATTGCTTTGGGGACGCCTACTTCGATCTTGGTGACGGAGTTCTTCATTGTGTTG 300 ******************************************* **************** consensus_6987#0 TGCGCCAATGCGGTGAATCTCATCGATGGACTTGACGGCCTGGCATCCGGTGTGGTGGCC 264 consensus_6987#1 TGCGCCAATGCGGTGAATTTCATTGATGGACTTGACGGCCTGGCATCCGGTGTGGTGGCC 360 ****************** **** ************************************ consensus_6987#0 ATCGGGTCCTTGGCTTTCTTCTCATACACCTACCTGCTGGCTCACGAACAGGACTTTGTT 324 consensus_6987#1 ATCGGGTCCTTGGCTTTCTTCTCATACACCTACCTGCTGGCTCACGAACAGGACTTTGTT 420 ************************************************************ consensus_6987#0 GTTGCGACGACTACCAGTCTCATTACGGCTGCGACGGCGGGCGCCTGTCTCGGTTTTTGC 384 consensus_6987#1 GTT--------------------------------------------------------- 423 *** consensus_6987#0 CCCACAACTGGCATCCGGCGAGGATGTTCATGGGTGATTCCGGAGCTCTGCTACTTGGCT 444 consensus_6987#1 ------------------------------------------------------------ consensus_6987#0 TATTGCTAGCTACCTCGACGATCTCGTTGACCGGACAGATCGATTCGACGGCTCTGACAG 504 consensus_6987#1 ------------------------------------------------------------ consensus_6987#0 CACGGGGGCGGCGGATTGGTCCCCGCTTACTTGCCAATCGTCGTGCCACTGATGGTGCTG 564 consensus_6987#1 ------------------------------------------------------------ consensus_6987#0 GCCATCCCTTTTCTGGACCTTGTCATGGGCTATGTCCGGAGGACATGGCGAGGGACGTGG 624 consensus_6987#1 ------------------------------------------------------------ consensus_6987#0 TTCTTCGTTGCGGACAATGCAACACCTTCATCACCGCTTATTGCAACGAGGCCACTCTCA 684 consensus_6987#1 ------------------------------------------------------------ consensus_6987#0 CATGCGGGCTGTCTTGCTGATGTATCTATGGACCACCGTGCTCACCTTTGGGACGGTGTT 744 consensus_6987#1 ------------------------------------------------------------ consensus_6987#0 TATTGGCCTGGAACAAACATGGTGGACGATCGTAATCGTGGTAACGGGACCTCGGAATGT 804 consensus_6987#1 ------------------------------------------------------------ consensus_6987#0 GCGCTACTCCTCACTATGGCGAA 827 consensus_6987#1 ----------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||