cluster # 6998

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6998 cluster # 6998 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6998#0 length = 558 sequences # 3

consensus_6998#1 length = 260 sequences # 1

consensusID : consensus_6998#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 558
fasta sequence

                              [TTTGTTTGTATTTTTTCTGGGACACTGTTGTATATTTTTAATACAATCATTGTACAACAGTGTGTCGAATGATGAAAGCATTGGCATCAGAACTATGATAATGTTCAGACAATATTATTATATACAAAAAAGTAATCCATGAAGAATTGTGATTGCTAGTGGTGATAGCGTGGATAAGAAGTTCCCGGATGTCCCATATGACCAGGTGGAAGATTTCTCATTGGCTGTTGTTGTTGCAGATTCGCATAACCTGAAGTGGTAGTAGTAGTAGTAATATTAGATAACTGCTGAGACTGTCCTGTTATACTGGGCTTATTTGTGTTTGTATGTAAGATTCCACTACTGTTAACAGTTGTAGATGTTGACGTTGTCGAAGAGGATGGTAATGGTGGTGGTGCAATCGATGTGTCATTATTCGCCTGGGATAAGCGGACACGCTTATTAAAGGGTATGTCATCAATAATATTCTGTTGATGAATTAATTGCCTTGTATGGGGATTAGATTGACCAGAGTTCATATGTTGTTGCTGTTGCTGTGTATTCAGTGGAGGTGGTTGT]

[+] EMBL AI394852             [TTTGTTTGTATTTTTTCTGGGACACTGTTGTATATTTTTAATACAATCATTGTACAACAGTGTGTCGAATGATGAAAGCATTGGCATCAGAACTATGATAATGTTCAGACAATATTATTATATACAAAATAGTAATCCATGAATAATTGTGATTGCTAGTGGTGATAGCGTGGATAAGAAGTTCCCGGATGTCGCATATGACCAAGTGGAAGATTTCGCATTGGCTGTTGTTGTTGCAGATTCGCATAACCTGAAGTGGTAGTAGTATTAGTAATATTAGATAACTGCTGATACTGTCCTGTTATACTGGGCTTACTTGCGTTTGTATGTAAGATTCCACTACTGTTAACACTTGTAGATGTTGACGTTGTCGAAGAGGATGGTAATGGTGGTGGTGCAATCGATGTGTCATTATTCGCCTGGGATAAGCGGACACGCTTATTAAAGGGTATGTCATCAATAATATTCTGTTG                                                                                     ]
[-] EMBL CD152830             [                                                                                                GATAATGTTCAGACAATATTATTATATACAAAAAAGTAATCCATGAAGAATTGTGATGGCTAGTGGTGATAGCGTGGATAAGAAGTTCCCGGATGTCCCATATGACCAGGTGGAAGATTTCTCATTGGCTGTTGTTGTTGCAGATTCGCATAACCTGAAGTGGTAGTAGTAGTAGTAATATTAGATAACTGCTGAGACTGTCCTGTTATACTGGGCTTATTTGTGTTTGTATGTAAGATTCCACTACTGTTAACAGTTGTAGATGTTGACGTTGTCGAGGCGGATGGTAATGGTGGTGGTGCAATCGATGTGTCATTATTCCCCTGGGATAACCGGACACGCTTATTAGATGGTATGTCATCATTATTATTCTGCTGATGAATTAATTGCCTTGTATGGGGATTAGATTGACCAGAGTTCATATGTTGTTGCTGTTGCTGTGTATTCAGTGGAGGTGGTTGT]
[+] EMBL CD152809             [                                                                                                     TGTTCAGACAATATTATTATATACAAAAAAGTAATCCATGAAGAATTGTGATTGCTAGTGGTGATAGCGTGGATAAGAAGTTCCCGGATGTCCCATATGACCAGGTGGAAGATTTCTCATTGGCTGTTGTTGTTGCAGATTCGCATAACCTGAAGTGGTGGTAGTAGTAGTAATATTAAATAACTGCTGAGACTGTCCTGTTATACTGGGCTTATTTGTGTTTGTATGTAAGATTCCACTACTGTTAACAGTTGTAGATGT                                                                                                                                                                                                    ]




>consensus_6998#0
TTTGTTTGTATTTTTTCTGGGACACTGTTGTATATTTTTAATACAATCATTGTACAACAG
TGTGTCGAATGATGAAAGCATTGGCATCAGAACTATGATAATGTTCAGACAATATTATTA
TATACAAAAAAGTAATCCATGAAGAATTGTGATTGCTAGTGGTGATAGCGTGGATAAGAA
GTTCCCGGATGTCCCATATGACCAGGTGGAAGATTTCTCATTGGCTGTTGTTGTTGCAGA
TTCGCATAACCTGAAGTGGTAGTAGTAGTAGTAATATTAGATAACTGCTGAGACTGTCCT
GTTATACTGGGCTTATTTGTGTTTGTATGTAAGATTCCACTACTGTTAACAGTTGTAGAT
GTTGACGTTGTCGAAGAGGATGGTAATGGTGGTGGTGCAATCGATGTGTCATTATTCGCC
TGGGATAAGCGGACACGCTTATTAAAGGGTATGTCATCAATAATATTCTGTTGATGAATT
AATTGCCTTGTATGGGGATTAGATTGACCAGAGTTCATATGTTGTTGCTGTTGCTGTGTA
TTCAGTGGAGGTGGTTGT

consensusID : consensus_6998#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 260
fasta sequence

                              [AGACTGTCCTGTTATACTGGGCTTATTTGTGTTTGTATGTAGGATTCCACTACTGTTAACAGTTGTAGATGTTGACGTTGTCGAGGCGGATGGTAATGGTGGTGGTGCAATCGATGTGTCATTATTCCCCTGGGATAACCGGACACGCTTATTAGATGGTATGTCATCATTATTATTCTGTTGATGAATTAATTGCCTTGTATGGGGATTAGATTGACCAGAGTTCATATGTTGGTGCAGTCGGTGAAGTGCAGGGTACA]

[-] EMBL CD168518             [AGACTGTCCTGTTATACTGGGCTTATTTGTGTTTGTATGTAGGATTCCACTACTGTTAACAGTTGTAGATGTTGACGTTGTCGAGGCGGATGGTAATGGTGGTGGTGCAATCGATGTGTCATTATTCCCCTGGGATAACCGGACACGCTTATTAGATGGTATGTCATCATTATTATTCTGTTGATGAATTAATTGCCTTGTATGGGGATTAGATTGACCAGAGTTCATATGTTGGTGCAGTCGGTGAAGTGCAGGGTACA]




>consensus_6998#1
AGACTGTCCTGTTATACTGGGCTTATTTGTGTTTGTATGTAGGATTCCACTACTGTTAAC
AGTTGTAGATGTTGACGTTGTCGAGGCGGATGGTAATGGTGGTGGTGCAATCGATGTGTC
ATTATTCCCCTGGGATAACCGGACACGCTTATTAGATGGTATGTCATCATTATTATTCTG
TTGATGAATTAATTGCCTTGTATGGGGATTAGATTGACCAGAGTTCATATGTTGGTGCAG
TCGGTGAAGTGCAGGGTACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6998#0      TTTGTTTGTATTTTTTCTGGGACACTGTTGTATATTTTTAATACAATCATTGTACAACAG 60
consensus_6998#1      ------------------------------------------------------------
                                                                                  

consensus_6998#0      TGTGTCGAATGATGAAAGCATTGGCATCAGAACTATGATAATGTTCAGACAATATTATTA 120
consensus_6998#1      ------------------------------------------------------------
                                                                                  

consensus_6998#0      TATACAAAAAAGTAATCCATGAAGAATTGTGATTGCTAGTGGTGATAGCGTGGATAAGAA 180
consensus_6998#1      ------------------------------------------------------------
                                                                                  

consensus_6998#0      GTTCCCGGATGTCCCATATGACCAGGTGGAAGATTTCTCATTGGCTGTTGTTGTTGCAGA 240
consensus_6998#1      ------------------------------------------------------------
                                                                                  

consensus_6998#0      TTCGCATAACCTGAAGTGGTAGTAGTAGTAGTAATATTAGATAACTGCTGAGACTGTCCT 300
consensus_6998#1      --------------------------------------------------AGACTGTCCT 10
                                                                        **********

consensus_6998#0      GTTATACTGGGCTTATTTGTGTTTGTATGTAAGATTCCACTACTGTTAACAGTTGTAGAT 360
consensus_6998#1      GTTATACTGGGCTTATTTGTGTTTGTATGTAGGATTCCACTACTGTTAACAGTTGTAGAT 70
                      ******************************* ****************************

consensus_6998#0      GTTGACGTTGTCGAAGAGGATGGTAATGGTGGTGGTGCAATCGATGTGTCATTATTCGCC 420
consensus_6998#1      GTTGACGTTGTCGAGGCGGATGGTAATGGTGGTGGTGCAATCGATGTGTCATTATTCCCC 130
                      ************** * **************************************** **

consensus_6998#0      TGGGATAAGCGGACACGCTTATTAAAGGGTATGTCATCAATAATATTCTGTTGATGAATT 480
consensus_6998#1      TGGGATAACCGGACACGCTTATTAGATGGTATGTCATCATTATTATTCTGTTGATGAATT 190
                      ******** *************** * ************ ** *****************

consensus_6998#0      AATTGCCTTGTATGGGGATTAGATTGACCAGAGTTCATATGTTGTTGCTGTTGCTGTGTA 540
consensus_6998#1      AATTGCCTTGTATGGGGATTAGATTGACCAGAGTTCATATGTTGGTGCAGTCGGTG-AAG 249
                      ******************************************** *** ** * **    

consensus_6998#0      TTCAGTGGAGGTGGTTGT 558
consensus_6998#1      TGCAGGGTACA------- 260
                      * *** * *