These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7005#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 610 fasta sequence [TGAGCTTGAGGTATATCTGCGTGATGACTCGGAAAGGTACTGCCAAGTTAGATGAACTTCGCAAGATCGAGGGTCAGGTGCAGACTTTTTGGGAGTCAAATAAAGTATTCGAAGCAGACGTTCCTTTGGAAAACAGTGAAACGATTCAAAAATACTTCGTCACTTTCCCTTACCCCTATATGAATGGAAGACTACATTTGGGCCACACATTTTCCTTATCGAAATGCGAGTTTTCCGTCGGATACGAACGACTAAAGGGCAAGTTGACTCTATGGCCCTTCGGTCTTCATTGCACCGGTACGCCTATCCTAGCGTCTGCAGACAAATTGTCACGAGAATGCAAGGAGTTCGGTTGTCCGCCTGTTTTTCCACCCGAGGCTTCAGAGCCTTCTGCTGATATTGAGGCAACTCCTGCTCAAGGTAAAAGCAAAAAAAGTAAGGCTGTTGCGAAGGCTGGTGGCGCAAAATTTCAGTGGCAAATAATGGAGAGCCTTGGCATGGAGAACAATGAAATCGCTAAATTTAAAGACCCTGAATACTGNTTGAAGTTTTTTCCCTGCTTTAGCTGTTGACGACCTGCGAAATTANGTGTCAGGTTGATTGGAGGAGA] [+] EMBL CD152976 [TGAGCTTGAGGTATATCTGCGTGATGACTCGGAAAGGTACTGCCAAGTTAGATGAACTTCGCAAGATCGAGGGTCAGGTGCAGACTTTTTGGGAGTCAAATAAAGTATTCGAAGCAGACGTTCCTTTGGAAAACAGTGAAACGATTCAAAAATACTTCGTCACTTTCCCTTACCCCTATATGAATGGAAGACTACATTTGGGCCACACATTTTCCTTATCGAAATGCGAGTTTTCCGTCGGATACGAACGACTAAAGGGCAAGTTGACTCTATGGCCCTTCGGTCTTCATTGCACCGGTACGCCTATCCTAGCGTCTGCAGACAAATTGTCACGAGAATGCAAGGAGTTCGGTTGTCCGCCTGTTTTTCCACCCGAGGCTTCAGAGCCTTCTGCTGATATTGAGGCAACTCCTGCTCAAGGTAAAAGCAAAAAAAGTAAGGCTGTTGCGAAGGCTGGTGGCGCAAAATTTCAGTGGCAAATAATGGAGAGCCTTGGCATGGAGAACAATGAAATCGCTAAATTTAAAGACCCTGAATACTGNTTGAAGTTTTTTCCCTGCTTTAGCTGTTGACGACCTGCGAAATTANGTGTCAGGTTGATTGGAGGAGA] [-] EMBL CD161250 [TGAGCTTGAGGTATATCTGCGTGATGACTCGGAAAGGTACTGCCAAGTTAGATGAACTTCGCAAGATCGAGGGTCAGGTGCAGACTTTTTGGGAGTCAAATAAAGTATTCGAAGCAGACGTTCCTTCGGAAAACAGTGAAACGATTCAAAAATACTTCGTCACTTTCCCTTACCCCTATATGAATGGAAGACTACATTTGGGCCACACATTTTCCTTATCGAAATGCGAGTTTTCCGTCGGATACGAACGACTAAAGGGCAAGTTGACTCTATGGCCCTTCGGTCTTCATTGCACCGGTACGCCTATCCTAGCGTCTGCAGACAAATTGTCACGAGAATGCAAGGAGTTCGGTTGTCCGCCTGT ] [-] EMBL CD161280 [TGAGCTTGAGGTATATCTGCGTGATGACTCGGAAAGGTACTGCCAAGTTAGATGAACTTCGCAAGATCGAGGGTCAGGTGCAGACTTTTTGGGAGTCAAATAAAGTATTCGAAGCAGACGTTCCTTTGGAAAACAGTGAAACGATTCAAAAATACTTCGTCACTTTCCCTTACCCCTATATGAATGGAAGACTACATTTGGGCCACACATTTTCCTTATCGAAATGCGAGTTTTCCGTCGGATACAAACGACTAAAGGGCAAGTTGACTCTATGGCCCTTCGGTCTTCATTGCACCGGTACGCCTATCCTAGCGTCTGCAGACAAATTGTCACGAGAATGCAAGGAGTTCGGTTGTCCG ] consensusID : consensus_7005#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence [TGTGGATGGGTGAAGTTTTCCGTCGGATACGAACGGTTAAAGGGCAAGTTGACTCTATGGCCCTTCGGTCTTCATTGCACCGGTACGCTTATCTTAGCGTCTGCAGACAAATTGTCACGAGAATGCAAGGGGTTCGGTTGTCCGCCTGTTTTTCCACCCGAGGCTTCAGAGCCTTCTGCTGATATTGAGGCAACTCCTGCTCAAGGTAAAAGCAAAAAAAGTAAGGCTGTTGCGAAGGCTGGTGGCGCAAAATTTCAGTGGCAAATAATGGAGAGCCTTGGCATGGAGAACAATGAAATCGCTAAATTTAAAGACCCTGAATACTGGTTGAAGTTTTTCCCTGCTTTAGCTGTTGATGACCTGCGAAAATTAGGTGTCAAGGTGGGTTCTATGTACTCCAGTCGGTCTTATTTAATTATTTTTAATGCTGTGCTTGTAATAAATAAAGTTTGTTTTTCTTAAAAAAAAAAAAAAA] [-] EMBL AI395554 [TGTGGATGGGTGAAGTTTTCCGTCGGATACGAACGGTTAAAGGGCAAGTTGACTCTATGGCCCTTCGGTCTTCATTGCACCGGTACGCTTATCTTAGCGTCTGCAGACAAATTGTCACGAGAATGCAAGGGGTTCGGTTGTCCGCCTGTTTTTCCACCCGAGGCTTCAGAGCCTTCTGCTGATATTGAGGCAACTCCTGCTCAAGGTAAAAGCAAAAAAAGTAAGGCTGTTGCGAAGGCTGGTGGCGCAAAATTTCAGTGGCAAATAATGGAGAGCCTTGGCATGGAGAACAATGAAATCGCTAAATTTAAAGACCCTGAATACTGGTTGAAGTTTTTCCCTGCTTTAGCTGTTGATGACCTGCGAAAATTAGGTGTCAAGGTGGGTTCTATGTACTCCAGTCGGTCTTATTTAATTATTTTTAATGCTGTGCTTGTAATAAATAAAGTTTGTTTTTCTTAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7005#0 TGAGCTTGAGGTATATCTGCGTGATGACTCGGAAAGGTACTGCCAAGTTAGATGAACTTC 60 consensus_7005#1 ------------------------------------------------------------ consensus_7005#0 GCAAGATCGAGGGTCAGGTGCAGACTTTTTGGGAGTCAAATAAAGTATTCGAAGCAGACG 120 consensus_7005#1 ------------------------------------------------------------ consensus_7005#0 TTCCTTTGGAAAACAGTGAAACGATTCAAAAATACTTCGTCACTTTCCCTTACCCCTATA 180 consensus_7005#1 ------------------------------------------------------------ consensus_7005#0 TGAATGGAAGACTACATTTGGGCCACACATTTTCCTTATCGAAATGCGA-GTTTTCCGTC 239 consensus_7005#1 ------------------------------------TGTGGATGGGTGAAGTTTTCCGTC 24 * * ** * ** ********** consensus_7005#0 GGATACGAACGACTAAAGGGCAAGTTGACTCTATGGCCCTTCGGTCTTCATTGCACCGGT 299 consensus_7005#1 GGATACGAACGGTTAAAGGGCAAGTTGACTCTATGGCCCTTCGGTCTTCATTGCACCGGT 84 *********** *********************************************** consensus_7005#0 ACGCCTATCCTAGCGTCTGCAGACAAATTGTCACGAGAATGCAAGGAGTTCGGTTGTCCG 359 consensus_7005#1 ACGCTTATCTTAGCGTCTGCAGACAAATTGTCACGAGAATGCAAGGGGTTCGGTTGTCCG 144 **** **** ************************************ ************* consensus_7005#0 CCTGTTTTTCCACCCGAGGCTTCAGAGCCTTCTGCTGATATTGAGGCAACTCCTGCTCAA 419 consensus_7005#1 CCTGTTTTTCCACCCGAGGCTTCAGAGCCTTCTGCTGATATTGAGGCAACTCCTGCTCAA 204 ************************************************************ consensus_7005#0 GGTAAAAGCAAAAAAAGTAAGGCTGTTGCGAAGGCTGGTGGCGCAAAATTTCAGTGGCAA 479 consensus_7005#1 GGTAAAAGCAAAAAAAGTAAGGCTGTTGCGAAGGCTGGTGGCGCAAAATTTCAGTGGCAA 264 ************************************************************ consensus_7005#0 ATAATGGAGAGCCTTGGCATGGAGAACAATGAAATCGCTAAATTTAAAGACCCTGAATAC 539 consensus_7005#1 ATAATGGAGAGCCTTGGCATGGAGAACAATGAAATCGCTAAATTTAAAGACCCTGAATAC 324 ************************************************************ consensus_7005#0 TGNTTGAAGTTTTTTCCCTGCTTTAGCTGTTGACGACCTGCGAAA-TTANGTGTCA-GGT 597 consensus_7005#1 TGGTTGAAGTTTTT-CCCTGCTTTAGCTGTTGATGACCTGCGAAAATTAGGTGTCAAGGT 383 ** *********** ****************** *********** *** ****** *** consensus_7005#0 TGATTGGAGGAGA----------------------------------------------- 610 consensus_7005#1 GGGTTCTATGTACTCCAGTCGGTCTTATTTAATTATTTTTAATGCTGTGCTTGTAATAAA 443 * ** * * consensus_7005#0 -------------------------------- consensus_7005#1 TAAAGTTTGTTTTTCTTAAAAAAAAAAAAAAA 475 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||