These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7023#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 657 fasta sequence [ATTAAGACATAGGTAGGTTACTACGCTCTTTTTAGCGCTTACTGTTTGCATTCCGCCCATCCACATGTGGAAGCTCAACAGCTCGGAGACCCAACAAAACAGTTGATTCTCGACGAGAACACCTGGACCTATCAGCATTACGCTGAGTGTGACGTTTGCGCTTTGACGACTTATAAAGACTAACTCTGTGAAGGTTATGTACAGAAATAAGTCAAAATACTTTGTTGGATCATAGTCTGTGTACTCGTGACCGGAATCCTCATGGTCTGAGCCACTTAAATCTTCAACTTCCCCTTCCTCGAAATCAATAGAGGTCATTGATTGGCTGCTAACAATGCTAAAATGGATACACGAACCAATTGTGAATATTCAGAAAACGCGACTACAGTACAACGAACTAGCACTCAGTGACGACTAACGAATACAGGAATACCTAAAATAACTTAGTTGCTTACGTCTGCCGAGAGCAAACACACCAGTCCTAAATACATTGGTTATTACACTGTTACTTAACATCGCAATCCATGCATTTGAAACTAAGAGCTACAAACCTCATCAAAAGCCCTAACTGATTTTGTATTTCTAGGGTTCACACAATAGTATGAACTNTATTATCTTGAGCAACGGCACTACTGGCAGAATGCCGCCAAAACTTTT] [+] EMBL CD127853 [ATTAAGACATAGGTAGGTTACTACGCTCTTTTTAGCGCTTACTGTTTGCATTCCGCCCATCCACATGTGGAAGCTCAACAGCTCGGAGACCCAACAAAACAGTTGATTCTCGACGAGAACACCTGGACCTATCAGCATTACGCTGAGTGTGACGTTTGCGCTTTGACGACTTATAAAGACTAACTCTGTGAAGGTTATGTACAGAAATAAGTCAAAATACTTTGTTGGATCATAGTCTGTGTACTCGTGACCGGAATCCTCATGGTCTGAGCCACTTAAATCTTCAACTTCCCCTTCCTCGAAATCAATAGAGGTCATTGATTGGCTGCTAACAATGCTAAAATGGATACACGAACCAATTGTGAATATTCAGAAAACGCGACTACAGTACAACGAACTAGCACTCAGTGACGACTAACGAATACAGGAATACCTAAAATAACTTAGTTGCTTACGTCTGCCGAGAGCAAACACACCAGTCCTAAATACATTGGTTATTACACTGTTACTTAACATCGCAATCCATGCATTTGAAACTAAGAGCTACAAACCTCATCAAAAGCCCTAACTGATTTTGTATTTCTAGGGTTCACACAATAGTATGAACTNTATTATCTTGAGCAACGGCACTACTGGCAGAATGCCGCCAAA ] [+] EMBL CD185805 [ ATTACGCTGAGTGTGACGTTTGCGCTTTGACGACTTATAAAGACTAACTCTGTGAAGGTTATGTACAGAAATAAGTCAAAATACTTTGTTGGATCATAGTCTGTGTACTCGTGACCGGAATCCTCATGGTCTGAGCCACTTAAATCTTCAACTTCCCCTTCCTCGAAATCAATAGAGGTCATTGATTGGCTGCTAACAATGCTAAAATGGATACACGAACCAATTGTGAATATTCAGAAAACACGACTACAGTACAACGAACTAGCACTCAGTGACGACTAACGAATACAGGAATACCTAAAATAACTTAGTTGCTTACGTCTGCCGAGAGCAAACACACCAGTCCTAAATACATTGGTTATTACACTGTTACTTAACATCGCAATCCATGCATTTGAAACTAAGAGCTACAAACCTTATCAAAAGCCCTAACTGATTTTGTATTTCTAGGGTTCACACAATAGTATGAACTTTATTATCTTGAGCAACGGCACTACTGGCATATTGCCGCCAAAACTTTT] consensusID : consensus_7023#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence [TCTTATCAGGTTCCTCATGGCTCATTAAGCAAGTATCATCTTCGTCTTCAGACAGGAATTCAAGTAATGGTAGCTTACTACGCTCTTTGGAGCGCTTACTGATTGCATTCCGCCCATCCACATGTGGAAGCTCAACAGCTCGGAGACCCAACAAAACAGTTGATTCTCGACGAGAACACCTGGACCTATCAGCATTACGCTGAGTGTGACGTTTGCGCTTTGACGACTTATAAAGACTAACTTTTGTTGGATCATAGTCTGTGTACTCGTGACCGGAATCCTCATGGTCTGAGCCACTTAAATCTTCAACTTCCCCTTCCTCGAAATCAATAGAGGTCATTGATTGGCTGCT] [+] EMBL CD159882 [TCTTATCAGGTTCCTCATGGCTCATTAAGCAAGTATCATCTTCGTCTTCAGACAGGAATTCAAGTAATGGTAGCTTACTACGCTCTTTGGAGCGCTTACTGATTGCATTCCGCCCATCCACATGTGGAAGCTCAACAGCTCGGAGACCCAACAAAACAGTTGATTCTCGACGAGAACACCTGGACCTATCAGCATTACGCTGAGTGTGACGTTTGCGCTTTGACGACTTATAAAGACTAACTTTTGTTGGATCATAGTCTGTGTACTCGTGACCGGAATCCTCATGGTCTGAGCCACTTAAATCTTCAACTTCCCCTTCCTCGAAATCAATAGAGGTCATTGATTGGCTGCT] consensusID : consensus_7023#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 119 fasta sequence [GTTGCTCTAGATAATAAAGTTCATACTATTGTGTGAACCCTATAAATACAAAAGTCAGTTACGGCTTTTGATGAGCATTGTTAGCAGCCAATCAATGACCTCTATTGATTTCGAGGAAG] [+] EMBL CD187817 [GTTGCTCTAGATAATAAAGTTCATACTATTGTGTGAACCCTATAAATACAAAAGTCAGTTACGGCTTTTGATGAGCATTGTTAGCAGCCAATCAATGACCTCTATTGATTTCGAGGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7023#0 ---------------------------------------------------------ATT 3 consensus_7023#1 TCTTATCAGGTTCCTCATGGCTCATTAAGCAAGTATCATCTTCGTCTTCAGACAGGAATT 60 consensus_7023#2 ------------------------------------------------------------ consensus_7023#0 AAGACATAGGTAGGTTACTACGCTCTTTTTAGCGCTTACTGTTTGCATTCCGCCCATCCA 63 consensus_7023#1 CAAGTAATGGTAGCTTACTACGCTCTTTGGAGCGCTTACTGATTGCATTCCGCCCATCCA 120 consensus_7023#2 ------------------------------------------------------------ consensus_7023#0 CATGTGGAAGCTCAACAGCTCGGAGACCCAACAAAACAGTTGATTCTCGACGAGAACACC 123 consensus_7023#1 CATGTGGAAGCTCAACAGCTCGGAGACCCAACAAAACAGTTGATTCTCGACGAGAACACC 180 consensus_7023#2 ------------------------------------------------------------ consensus_7023#0 TGGACCTATCAGCATTACGCTGAGTGTGACGTTTGCGCTTTGACGACTTATAAAGACTAA 183 consensus_7023#1 TGGACCTATCAGCATTACGCTGAGTGTGACGTTTGCGCTTTGACGACTTATAAAGACTAA 240 consensus_7023#2 ------------------------------------------------------------ consensus_7023#0 CTCTGTGAAGGTTATGTACAGAAATAAGTCAAAATACTTTGTTGGATCATAGTCTGTGTA 243 consensus_7023#1 CT-----------------------------------TTTGTTGGATCATAGTCTGTGTA 265 consensus_7023#2 -----------------------------------GTTGCTCTAGATAATAAAGTTCATA 25 * * *** *** * ** consensus_7023#0 CTCGTGACCGGAATCCTCATGGTCTGA-GCCACTTAAATCTTCAACTTCCCCTTCCTCGA 302 consensus_7023#1 CTCGTGACCGGAATCCTCATGGTCTGA-GCCACTTAAATCTTCAACTTCCCCTTCCTCGA 324 consensus_7023#2 CTATTGTGTGAACCCTATAAATACAAAAGTCAGTTACGGCTTTTGATGAGCATTGTTAGC 85 ** ** * * * * * * * ** *** *** * * ** * * consensus_7023#0 AATCAATAGAGGTCATTGATTGGCTGCTAACAATGCTAAAATGGATACACGAACCAATTG 362 consensus_7023#1 AATCAATAGAGGTCATTGATTGGCTGCT-------------------------------- 352 consensus_7023#2 AGCCAATCAATGACCTCTATTGATTTCGAGGAAG-------------------------- 119 * **** * * * * **** * * consensus_7023#0 TGAATATTCAGAAAACGCGACTACAGTACAACGAACTAGCACTCAGTGACGACTAACGAA 422 consensus_7023#1 ------------------------------------------------------------ consensus_7023#2 ------------------------------------------------------------ consensus_7023#0 TACAGGAATACCTAAAATAACTTAGTTGCTTACGTCTGCCGAGAGCAAACACACCAGTCC 482 consensus_7023#1 ------------------------------------------------------------ consensus_7023#2 ------------------------------------------------------------ consensus_7023#0 TAAATACATTGGTTATTACACTGTTACTTAACATCGCAATCCATGCATTTGAAACTAAGA 542 consensus_7023#1 ------------------------------------------------------------ consensus_7023#2 ------------------------------------------------------------ consensus_7023#0 GCTACAAACCTCATCAAAAGCCCTAACTGATTTTGTATTTCTAGGGTTCACACAATAGTA 602 consensus_7023#1 ------------------------------------------------------------ consensus_7023#2 ------------------------------------------------------------ consensus_7023#0 TGAACTNTATTATCTTGAGCAACGGCACTACTGGCAGAATGCCGCCAAAACTTTT 657 consensus_7023#1 ------------------------------------------------------- consensus_7023#2 ------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||