These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7037#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 614 fasta sequence [TTCGATTTCTGACTGTTTACACACTGATGTTGTACTATTGCTAGATGACTGAATTGTGGACATTTTTATTCCAGCTACACCC-TTTTTTTCGCAGGTTAGCAAATCCCGTTTAATTCGACGTAAACGGCCAGAACGATCTTTCCGTATTTGAGTCATATTTTTCAAATCTATGCTGTATACATAACCTGCAATGGTCAATTCATATGACGATAATTGTTTATTAAATGCATTCTCCAATTCGTTACACGTACGTTCATCGTATTGCCACCAACCTTGAAAACCTTCATAGATCCAAGAATAACTTGGTAATTCATTAGAGTTTGAAGCATTGACTGATTGAGGTAAAGTTGACAAGCGTTCACATAAATCAACAATATGACTTAATTTATCTTGATCGTTTTCACGTAGATCGCAAACATTTATTAACTTGGGATTATCGAAAAAACGCGATGAGAATCTACTGCGGCACATAGGACATTTTCGCCTGTGGAAGGCACAACCTTTAATGCACAAAAAGCAAAATATATGACCACATGGTAATTGAGCAGGATGAACAAGGTTTTGCAAGCATATGCTGCACTCTAGACTATCAACTGTCATAGAGCGGAAGAAAT] [+] EMBL CD160726 [TTCGATTTCTGACTGTTTACACACTGATGTTGTACTATTGCTAGATGACTGAATTGTGGACATTTTTATTCCAGCTACACCC TTTTTTTCGCAGGTTAGCAAATCCCGTTTAATTCGACGTAAACGGCCAGAACGATCTTTCCGTATTTGAGTCATATTTTTCAAATCTATGCTGTATACATAACCTGCAATGGTCAATTCATATGACGATAATTGTTTATTAAATGCATTCTCCAATTCGTTACACGTACGTTCATCGTATTGCCACCAACCTTGAAAACCTTCATAGATCCAAGAATAACTTGGTAATTCATTAGAGTTTGAAGCATTGACTGATTGAGGTAAAGTTGACAAGCGTTCACGTAAATCAACAATATGACTTAATTTATCTTGATCGTTTTCACGTAGATCGCAAACATTTATTAACTTGGGATTATCGAAAAAACGCGATGAGAATCTACTGCGGCACATAGGACATTTTCGCCTGTGGAAGGCACAACCTTTAATGCACAAAAAGCAAAATATATGACCACATGGTAATTGAGCAGGATGAACAAGGTTTTGCAAGCATATGCTGCACTCTAGACTATCAACTGTCATAGAGCGGAAGAAAT] [+] EMBL CD178440 [TTCGATTTCTGACTGTTTACACACTGATGTTGTACTATTGCTAGATGACTGAATTGTGGACATTTTTATTCCAGCTACACCCTTTTTTTTCGCAGGTTAGCAAATCCCGTTTAATTCGACGTAAACGGCCAGAACGATCTTTCCGTATTTGAGTCATATTTTTCAAATCTATGCTGTATACATAACCTGCAATGGTCAATTCATATGACGATAATTGTTTATTAAATGCATTCTCCAATTCGTTACACGTACGTTCATCGTATTGCCACCAACCTTGAAAACCTTCATAGAACCAAGAATAACTTGGTAATTCATTAGAGTTTGAAGCATTGACTGATTGAGGTAAAGTTGACAAGCGTTCACATAAATCAACAATATGACTTAATTTATCTTGATCGTTTTCACGTAGATCGCAAACATTTATTAGCTTGGGATTATCGAAAAAACGCGATGAGAATCTACTGCGGCACATAGGACATTTTCGCCTGTGGAAGGCACAACCTTTAATGCACAAAAAGCAAAATATATGACCACATGGTAATTGAGCAGGATGAACAAGG ] [-] EMBL CD165243 [ GTTGACAAGCGTTCACATAAATCAACAATATGACTTAATTTATCTTGATCGTTTTCACGTAGATCGCAAACATTTATTAACTTGGGATTATCGAAAAAACGCGATGAGAATCTACTGCGGCACATAGGACATTT ] consensusID : consensus_7037#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 416 fasta sequence [TGTTTACACACTGATGTTGTACTATTGCTAGATGACTGAATTGTGGACATTTTTATTCCAGCTACACCCTTTTTTTCGCAGGTTAGCAAATCCCGTTTAATTCGACGTAAACGGCCAGAACGATCTTTCCGTATTTGAGTCATATTTTTCAAATCTATGCTGTATACATAACCTGCAATGGTCAATTCATATGACGATAATTGTTTATTAAATGCATTCTCCAATTCGTTACACGTACGTTCATCGTATTGCCACCAACCTTGAAAACCTTCATAGAACCAAGAATAACTTGGTAATTCATTAGAGTTTGAAGCATAGACTGATTGAGGTAAAGTTGACAAGCGTTCACATAAATCAACAATATGACTTAATTTATCTTGATCGTTTTCGAGGAAGNNCCAGGCTGCTATCTGAAT] [-] EMBL CD153712 [TGTTTACACACTGATGTTGTACTATTGCTAGATGACTGAATTGTGGACATTTTTATTCCAGCTACACCCTTTTTTTCGCAGGTTAGCAAATCCCGTTTAATTCGACGTAAACGGCCAGAACGATCTTTCCGTATTTGAGTCATATTTTTCAAATCTATGCTGTATACATAACCTGCAATGGTCAATTCATATGACGATAATTGTTTATTAAATGCATTCTCCAATTCGTTACACGTACGTTCATCGTATTGCCACCAACCTTGAAAACCTTCATAGAACCAAGAATAACTTGGTAATTCATTAGAGTTTGAAGCATAGACTGATTGAGGTAAAGTTGACAAGCGTTCACATAAATCAACAATATGACTTAATTTATCTTGATCGTTTTCGAGGAAGNNCCAGGCTGCTATCTGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7037#0 TTCGATTTCTGACTGTTTACACACTGATGTTGTACTATTGCTAGATGACTGAATTGTGGA 60 consensus_7037#1 -------------TGTTTACACACTGATGTTGTACTATTGCTAGATGACTGAATTGTGGA 47 *********************************************** consensus_7037#0 CATTTTTATTCCAGCTACACCCTTTTTTTCGCAGGTTAGCAAATCCCGTTTAATTCGACG 120 consensus_7037#1 CATTTTTATTCCAGCTACACCCTTTTTTTCGCAGGTTAGCAAATCCCGTTTAATTCGACG 107 ************************************************************ consensus_7037#0 TAAACGGCCAGAACGATCTTTCCGTATTTGAGTCATATTTTTCAAATCTATGCTGTATAC 180 consensus_7037#1 TAAACGGCCAGAACGATCTTTCCGTATTTGAGTCATATTTTTCAAATCTATGCTGTATAC 167 ************************************************************ consensus_7037#0 ATAACCTGCAATGGTCAATTCATATGACGATAATTGTTTATTAAATGCATTCTCCAATTC 240 consensus_7037#1 ATAACCTGCAATGGTCAATTCATATGACGATAATTGTTTATTAAATGCATTCTCCAATTC 227 ************************************************************ consensus_7037#0 GTTACACGTACGTTCATCGTATTGCCACCAACCTTGAAAACCTTCATAGATCCAAGAATA 300 consensus_7037#1 GTTACACGTACGTTCATCGTATTGCCACCAACCTTGAAAACCTTCATAGAACCAAGAATA 287 ************************************************** ********* consensus_7037#0 ACTTGGTAATTCATTAGAGTTTGAAGCATTGACTGATTGAGGTAAAGTTGACAAGCGTTC 360 consensus_7037#1 ACTTGGTAATTCATTAGAGTTTGAAGCATAGACTGATTGAGGTAAAGTTGACAAGCGTTC 347 ***************************** ****************************** consensus_7037#0 ACATAAATCAACAATATGACTTAATTTATCTTGATCGTTTTCACGTAGATCGCAAACATT 420 consensus_7037#1 ACATAAATCAACAATATGACTTAATTTATCTTGATCGTTTTCGAGGAAGNNCCAGGCTGC 407 ****************************************** * * ** * consensus_7037#0 TATTAACTTGGGATTATCGAAAAAACGCGATGAGAATCTACTGCGGCACATAGGACATTT 480 consensus_7037#1 TATCTGAAT--------------------------------------------------- 416 *** * consensus_7037#0 TCGCCTGTGGAAGGCACAACCTTTAATGCACAAAAAGCAAAATATATGACCACATGGTAA 540 consensus_7037#1 ------------------------------------------------------------ consensus_7037#0 TTGAGCAGGATGAACAAGGTTTTGCAAGCATATGCTGCACTCTAGACTATCAACTGTCAT 600 consensus_7037#1 ------------------------------------------------------------ consensus_7037#0 AGAGCGGAAGAAAT 614 consensus_7037#1 -------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||