These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7071#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 550 fasta sequence [CCGTTGTACATGTGCCAAGCTCTGCGTTTCTTATGTCCGACTGACTGTGACCAAAGCAATCTAATACAGGTAGACTTATTTTGGACCAGCGCTGAACTAAGTAAATATATTTAAAAATCTACGATCGAGCTGCTATATACTAAATAACATCCTACTTTCATTTTTGTGTGCTGAGTTATGGCTTTAACATCGTCACGAATACGATTATCACGCACCAATTACTTCCTGTGTCAAAAATATATCATATTTTGTCAAAAGTGTAAATTGACGGAGATCAGTCCCATTCGTGTACGTTTCGCACCAAGTCCTACAGGTTTTATGCATTTAGGCGGTTTACGTACTGCCTTATTTAACAAGTTGTTTGCTGTGAAACATTCGGGAAAATTCATACTACGTATTGAAGATACGGATAAATCCAGAGTTCAACCATATGCNTAGGACGATATTATAGAGTCGCTTCACTGGTCTGGACTAATTCCGGACGAAAGTCCAACCACTGGTGGAAATTATGGTTCGTACATTCAATCGGAAAGAAGACCCCTGTACTTAT] [+] EMBL AI976349 [CCGTTGTACATGTGCCAAGCTCTGCGTTTCTTATGTCCGACTGACTGTGACCAAAGCAATCTAATACAGGTAGACTTATTTTGGACCAGCGCTGAACTAAGTAAATATATTTAAAAATCTACGATCGAGCTGCTATATACTAAATAACATCCTACTTTCATTTTTGTGTGCTGAGTTATGGCTTTAACATCGTCACGAATACGATTATCACGCACCAATTACTTCCTGTGTCAAAAATATATCATATTTTGTCAAAAGTGTAAATTGACGGAGATCAGTCCCATTCGTGTACGTTTCGCACCAAGTCCTACAGGTTTTATGCATTTAGGCGGTTTACGTACTGCCTTATTTAACAAGTTGTTTGCTGTGAAACATTCGGGAAAATTCATACTACGTATTGAAGATACGGATAAATCCAGAGTTCAACCATATGCNTAGGACGATATTATAGAGTCGC ] [+] EMBL CD167477 [ ACGTTTCGCACCAAGTCCTACAGGTTTTATGCATTTAGGCGGTTTACGTACTGCCTTATTTAACAAGTTGTTTGCTGTGAAACATTCGGGAAAATTCATACTACGTATTGAAGATACGGATAAA AGTTCAACCATATGCTAAGGACGATATTATAGAGTCGCTTCACTGGTCTGGACTAATTCCGGACGAAAGTCCAACCACTGGTGGAAATTATGGTTCGTACATTCAATCGGAAAGAAGACCCCTGTACTTAT] consensusID : consensus_7071#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 368 fasta sequence [CAAAGCAATCTAATACAGGTAGACTTATTTTGGACCAGCGNTAACCCTATGATATAAACTGTTACGTTATATATATAGCTGAACTAAGTAAATATATTTAAAAATCTACGATCGAGCTGCTATATACTAAATAACATCCTACTTTCATTTTTGTGTGCTGAGTTATGGCTTTAACATCGTCACGAATACGATTATCACGCACCAATTACTTCCTGTGTCAAAAATATATCATATTTTGTCGAAAGTGTAAATTGACGGAGATCAGTCCCATTCGTGTACGTTTCGCACCAAGTCCTACAGGTTTTATGCATTTAGGCGGTTTACGTACTGCCTTATTTAACAGTTGTTTGCTGTGAAACATTCGGGAA] [+] EMBL CD136564 [CAAAGCAATCTAATACAGGTAGACTTATTTTGGACCAGCGNTAACCCTATGATATAAACTGTTACGTTATATATATAGCTGAACTAAGTAAATATATTTAAAAATCTACGATCGAGCTGCTATATACTAAATAACATCCTACTTTCATTTTTGTGTGCTGAGTTATGGCTTTAACATCGTCACGAATACGATTATCACGCACCAATTACTTCCTGTGTCAAAAATATATCATATTTTGTCGAAAGTGTAAATTGACGGAGATCAGTCCCATTCGTGTACGTTTCGCACCAAGTCCTACAGGTTTTATGCATTTAGGCGGTTTACGTACTGCCTTATTTAACAGTTGTTTGCTGTGAAACATTCGGGAA] [+] EMBL CD136557 [CAAAGCAATCTAATACAGGTAGACTTATTTTGGACCAGCGGTAACCCTATGATATAAACTGTTACGTTATATATATAGCTGAACTAAGTAAATATATTTAAAAATCTACGATCGAGCTGCTATATACTAAATAACATCCTACTTTCATTTTTGTGTGCTGAGTTATGGCTTTAACATCGTCACGAATACGATTATCACGCACCAATTACTTCCTGTGTCAAAAATATATCATATTTTGTCAAAAGTGTAAATTGACGGAGATCAGTCCCATTCGTGTACGTTTCGCACCAAGTCCTACAGGTTTTATGCATTTAGGCGGNTTACGTACTGCCTTATNTTACAGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7071#0 CCGTTGTACATGTGCCAAGCTCTGCGTTTCTTATGTCCGACTGACTGTGACCAAAGCAAT 60 consensus_7071#1 ------CAAAGCAATCTAATACAGGTAGACTTATTTTGGACCAGCGNTAACCC------T 48 * * * * * * ***** * *** * * *** * consensus_7071#0 CTAATACAGGTAGACTTATTTTGGACCAGCGCTGAACTAAGTAAATATATTTAAAAATCT 120 consensus_7071#1 ATGATATAAACTGTTACGTTATATAT-ATAGCTGAACTAAGTAAATATATTTAAAAATCT 107 * *** * * ** * * * ****************************** consensus_7071#0 ACGATCGAGCTGCTATATACTAAATAACATCCTACTTTCATTTTTGTGTGCTGAGTTATG 180 consensus_7071#1 ACGATCGAGCTGCTATATACTAAATAACATCCTACTTTCATTTTTGTGTGCTGAGTTATG 167 ************************************************************ consensus_7071#0 GCTTTAACATCGTCACGAATACGATTATCACGCACCAATTACTTCCTGTGTCAAAAATAT 240 consensus_7071#1 GCTTTAACATCGTCACGAATACGATTATCACGCACCAATTACTTCCTGTGTCAAAAATAT 227 ************************************************************ consensus_7071#0 ATCATATTTTGTCAAAAGTGTAAATTGACGGAGATCAGTCCCATTCGTGTACGTTTCGCA 300 consensus_7071#1 ATCATATTTTGTCGAAAGTGTAAATTGACGGAGATCAGTCCCATTCGTGTACGTTTCGCA 287 ************* ********************************************** consensus_7071#0 CCAAGTCCTACAGGTTTTATGCATTTAGGCGGTTTACGTACTGCCTTATTTAACAAGTTG 360 consensus_7071#1 CCAAGTCCTACAGGTTTTATGCATTTAGGCGGTTTACGTACTGCCTTATTTAACA-GTTG 346 ******************************************************* **** consensus_7071#0 TTTGCTGTGAAACATTCGGGAAAATTCATACTACGTATTGAAGATACGGATAAATCCAGA 420 consensus_7071#1 TTTGCTGTGAAACATTCGGGAA-------------------------------------- 368 ********************** consensus_7071#0 GTTCAACCATATGCNTAGGACGATATTATAGAGTCGCTTCACTGGTCTGGACTAATTCCG 480 consensus_7071#1 ------------------------------------------------------------ consensus_7071#0 GACGAAAGTCCAACCACTGGTGGAAATTATGGTTCGTACATTCAATCGGAAAGAAGACCC 540 consensus_7071#1 ------------------------------------------------------------ consensus_7071#0 CTGTACTTAT 550 consensus_7071#1 ---------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||