These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7077#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [AATAGGGTAATAGTCATGAGTGAAGTAGTAACAAAAAAGAAGAAAGCGCCCGTAATCAAATACAACACGCATTCATATAAATGCAAAAAAAGAATCTGAAAGCAGATGCTTGAGCGGAAAGCCGCTGACAATTACATGTCGCTCAGTCAGCTACTGTTGCAAAGTGCGCGCACATCGCAGAATAACCATTAAGCGGGTTGAAGCTCCGAAATTGTCGAAGGAGTATTTAGCGTTGACGGCTGCGAAGAATAAAATTTGGCGCCCAACTGAACAATGATCAGCAAAACACTGCAATTCCTAATAAAGCGAAAGTGAACACAACTGAGATATTTTCAAGCGCTGATCGATGTTGAAGCGTGTCTTGGTGAACTGACTGCTGCTGTAT] [+] EMBL CD120151 [AATAGGGTAATAGTCATGAGTGAAGTAGTAACAAAAAAGAAGAAAGCGCCCGTAATCAAATACAACACGCATTCATATAAATGCAAAAAAAGAATCTGAAAGCAGATGCTTGAGCGGAAAGCCGCTGACAATTACATGTCGCTCAGTCAGCTACTGTTGCAAAGTGCGCGCACATCGCAGAATAACCATTAAGCGGGTTGAAGCTCCGAAATTGTCGAAGGAGTATTTAGCGTTGACGGCTGCGAAGAATAAAATTTGGCGCCCAACTGAACAATGATCAGCAAAACACTGCAATTCCTAATAAAGCGAAAGTGAACACAACTGAGATATTTTCAAGCGCTGATCGATGTTGAAGCGTGTCTTGGTGAACTGACTGCTGCTGTAT] consensusID : consensus_7077#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 372 fasta sequence [ATAGGGTAATTGTCATGAGTGAAGTAGTAACAAAAAAGAAGAAAGCGCCCGTAATCAATACAACACGCATTCATATAAAGCTAAAAAAAGATCTGAAAGCAGAGCTTGAGCGGAAAGCCGCTGACAATTACATGTCGCTCAGTCAGCTACTGTTGCAAAGTGCGCGCACATCGCAGATCACCATTAAGCGGGTTGAAGCTCCG-AAATTGTCGAAGGAGTATTTAGCGTTGACGGCTGCGACGAATAAATTTGGCGCCCAACTGAACATGATCAGCAAACACTGCAATTCCTATAAAAGCGACAGTGACACACTGAG-AATTTTTCAAGCGCTGATCGATGTTGAGCGTGGTCTTGGTGAACTGACTGCTGCTG] [+] EMBL CD120096 [ATAGGGTAATTGTCATGAGTGAAGTAGTAACAAAAAAGAAGAAAGCGCCCGTATTCAATACAACACGCATTCATATAAAGCTAAAAAAAGATCTGAAAGCATAGCTTGAGCGGAAAGCCGCTGGCAATTACATGTCGCTCAGACAGCTACTGTGGCAAAGTGCTCGCACATCGCTGATCACCATTAAGCGGGTTGAAGCTCCG AAATTGTCGAAGGAGTATTTAGCGTTGACGGCTGCGACGAATAAATATGGCGCCCAACTGACCATGATCAGCAAACACTGCGATTCCTATAAAAGCGACAGGGACACACTGGGCAATTTTTCATGCGCTGATCGATGTTGAGCGTGGACTAGGTGAACTGACTGCTGCTG] [+] EMBL CD120086 [ATAGGGTAATAGTCATGAGTGAAGTAGTAACAAAAAAGAAGAAAGCGCCCGTAATCAATACAACACGCATTCATATAAAGCTAAAAAAAGATCTGAAAGCAGAGCTTGAGCGGAAAGCCGCTGACAATTACATGTCGCTCAGTCAGCTACTGTTGCAAAGTGCGCGCACATCGCAGATCACCATTAAGCGGGTTGAAGCTCCG AAATTGTCGAAGGAGTATTTAGCGTTGACGGCTGCGACGAATAAATTTGGCGCCCAACTGAACATGATCAGCAAACACTGCAATTCCTATAAAAGCGACAGTGACACACTGAG AATTTTTCAAGCGCTGATCGATGTTGTGCGTGGTCTTGCAGAACTGACTGCTGCTG] [+] EMBL CD120462 [ CCCGTAATCAATACAACACGCATTCATATAAAGCTAAAAAAAGATCTGAAAGCAGAGCTTGAGCGGAAAGCCGCTGACAATTACATGTCGCTCAGTCAGCTACTGTTGCAAAGTGCGCGCACATCGCAGATCACCATTAAGCGGGTTGAAGCTCCGTGAATTGTCGAAGGAGTTTTTAGCGTTGACGGCTGCGACGAATANATTTGGCGCCCAACTGAACATGATCAGCAAACACTGCAATTCCTATAANAGCGACAGTGACACACTGAG AATTTTTCAAGCGCTGATCGATGTTGAGCGTGGTCTTGGTGAACTGACTGCTGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7077#0 AATAGGGTAATAGTCATGAGTGAAGTAGTAACAAAAAAGAAGAAAGCGCCCGTAATCAAA 60 consensus_7077#1 -ATAGGGTAATTGTCATGAGTGAAGTAGTAACAAAAAAGAAGAAAGCGCCCGTAATCAA- 58 ********** *********************************************** consensus_7077#0 TACAACACGCATTCATATAAATGCAAAAAAAGAATCTGAAAGCAGATGCTTGAGCGGAAA 120 consensus_7077#1 TACAACACGCATTCATATAAA-GCTAAAAAAAGATCTGAAAGCAGA-GCTTGAGCGGAAA 116 ********************* ** ****** ************* ************* consensus_7077#0 GCCGCTGACAATTACATGTCGCTCAGTCAGCTACTGTTGCAAAGTGCGCGCACATCGCAG 180 consensus_7077#1 GCCGCTGACAATTACATGTCGCTCAGTCAGCTACTGTTGCAAAGTGCGCGCACATCGCAG 176 ************************************************************ consensus_7077#0 AATAACCATTAAGCGGGTTGAAGCTCCGAAATTGTCGAAGGAGTATTTAGCGTTGACGGC 240 consensus_7077#1 A-TCACCATTAAGCGGGTTGAAGCTCCGAAATTGTCGAAGGAGTATTTAGCGTTGACGGC 235 * * ******************************************************** consensus_7077#0 TGCGAAGAATAAAATTTGGCGCCCAACTGAACAATGATCAGCAAAACACTGCAATTCCTA 300 consensus_7077#1 TGCGACGAATAAA-TTTGGCGCCCAACTGAACA-TGATCAGCAAA-CACTGCAATTCCTA 292 ***** ******* ******************* *********** ************** consensus_7077#0 ATAAAGCGAAAGTGAACACAACTGAGATATTTTCAAGCGCTGATCGATGTTGAAGCGTGT 360 consensus_7077#1 TAAAAGCGACAGTGA-CACA-CTGAGAATTTTTCAAGCGCTGATCGATGTTGAGCGTGGT 350 ******* ***** **** ****** ************************ ** consensus_7077#0 CTTGGTGAACTGACTGCTGCTGTAT 385 consensus_7077#1 CTTGGTGAACTGACTGCTGCTG--- 372 ********************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||