cluster # 7085

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Schistosoma mansoni
cluster # 7085 cluster # 7085 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7085#0 length = 609 sequences # 2

consensus_7085#1 length = 431 sequences # 2

consensusID : consensus_7085#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 609
fasta sequence

                              [TTCGCTAACCAAGTCGTTCATGTTCGATTCAGCTTCAGTGAATTCCATTTCATCCATACCTTCACCAGTGTACCAGTGAAGAAAAGCCTTTCGACGGAACATAGCTGTGAATTGTTCCGAGATACGTTTGAATAATTCTTGGATGGCAGTGCTGTTGCCGATGAATGTGGCGGACATTTTCAATCCACGTGGTGGAATATCGCAAACAGCTGTTTTAACGTTGTTTGGAATCCATTCGACGAAGTAGGACGAGTTCTTGTTTTGAACATTGAGCATTTGTTCATCGACTTCTTTCATTGACATACGACCACGGAAGATCGCAGCGACGGTCAAGTATCGACCATGTCGAGGATCACATGCAGCCATCATGTTCTTGGCATCGAACATTTGTTGTGTCAATTCTGGAACAGTCAAGGCACGGTATTGTTGTGAACCACGGGATGTTAATGGGGCGAAGCCAGGCATGAAGAAGTGAAGACGTGGAAATGGAACCATGTTGACGGCCAATTTACGTAAATCAGCGTTCAATTGACCTGGAAATCGAAGACAGGTGGTAACACCAGACATCGTAGCCGAGACAGGTGATTCAATCACCATAGGTTGGTGTTG]

[+] EMBL CD088322             [TTCGCTAACCAAGTCGTTCATGTTCGATTCAGCTTCAGTGAATTCCATTTCATCCATACCTTCACCAGTGTACCAGTGAAGAAAAGCCTTTCGACGGAACATAGCTGTGAATTGTTCCGAGATACGTTTGAATAATTCTTGGATGGCAGTGCTGTTGCCGATGAATGTGGCGGACATTTTCAATCCACGTGGTGGAATATCGCAAACAGCTGTTTTAACGTTGTTTGGAATCCATTCGACGAAGTAGGACGAGTTCTTGTTTTGAACATTGAGCATTTGTTCATCGACTTCTTTCATTGACATACGACCACGGAAGATCGCAGCGACGGTCAAGTATCGACCATGTCGAGGATCACATGCAGCCATCATGTTCTTGGCATCGAACATTTGTTGTGTCAATTCTGGAACAGTCAAGGCACGGTATTGTTGTGAACCACGGGATGTTAATGGGGCGAAGCCAGGCATGAAGAAGTGAAGACGTGGAAATGGAACCATGTTGACGGCCAATTTACGTAAATCAGCGTTCAATTGACCTGGAAATCGAAGACAGGTGGTAACACCAGACATCGTAGCCGAGACAGGTGATTCAATCACCATAGGTTGGTGTTG]
[-] EMBL CD136101             [                                     GTGGATTCCATTTCATCCATACCTTCACCAGTGTACCAGTGAAGAAAAGCCTTTCGACGGAACGTAGCTGTGAATTGTTCCGAGATACGTTTGAATAATTCTCGGATGGCAGTGCTGTTGCCGATGAATGTGGCGGACATTTTCAATCCACGTGGTGGAATATCGCAAACAGCTGTTTTAACGTTGTTTGGAATCCATTCGACGAAGTAGGACGAGTTCTTGTTTTGAACATTGAGCATTTGTTCATCGACTTCTTTCATTGACATACGACCACGGAAGATCGCAGCGACGGTCAAGTATCGACCATGTCGAGGATCACATGCAGCCATCATG                                                                                                                                                                                                                                               ]




>consensus_7085#0
TTCGCTAACCAAGTCGTTCATGTTCGATTCAGCTTCAGTGAATTCCATTTCATCCATACC
TTCACCAGTGTACCAGTGAAGAAAAGCCTTTCGACGGAACATAGCTGTGAATTGTTCCGA
GATACGTTTGAATAATTCTTGGATGGCAGTGCTGTTGCCGATGAATGTGGCGGACATTTT
CAATCCACGTGGTGGAATATCGCAAACAGCTGTTTTAACGTTGTTTGGAATCCATTCGAC
GAAGTAGGACGAGTTCTTGTTTTGAACATTGAGCATTTGTTCATCGACTTCTTTCATTGA
CATACGACCACGGAAGATCGCAGCGACGGTCAAGTATCGACCATGTCGAGGATCACATGC
AGCCATCATGTTCTTGGCATCGAACATTTGTTGTGTCAATTCTGGAACAGTCAAGGCACG
GTATTGTTGTGAACCACGGGATGTTAATGGGGCGAAGCCAGGCATGAAGAAGTGAAGACG
TGGAAATGGAACCATGTTGACGGCCAATTTACGTAAATCAGCGTTCAATTGACCTGGAAA
TCGAAGACAGGTGGTAACACCAGACATCGTAGCCGAGACAGGTGATTCAATCACCATAGG
TTGGTGTTG

consensusID : consensus_7085#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 431
fasta sequence

                              [CGCCTTCTTCTTCACCACCTTCACCTTCTTCTTCAGCCGTAGCATCTTGGTATTGTTGATATTCGCTGACCAAATCGTTCATGTTGGATTCGGCTTCAGTGAATTCCATTTCGTCCATGCCTTCACCTGTGTACCAGTGAAGAAAAGCCTTTCGGCGGAACATAGCTGTGAATTGTTCCGAAATTCGTTTGAAGAGTTCTTGAATGGCTGTGCTGTTACCAATGAAAGTAGCAGACATCTTAAGACCACGTGGTGGAATATCGCAGACAGCGGTCTTAACGTTGTTCGGGATCCATTCAACGAAGTATGATGAGTTCTTGTTTTGAACGTTCAACATTTGTTCATCGACTTCCTTCATCGACATACGACCTCGGAAGATAGCAGCAACAGTCAAATATCGACCATGTCGAGGATCACAAGCAGCCATCATG]

[+] EMBL CD093501             [CGCCTTCTTCTTCACCACCTTCACCTTCTTCTTCAGCCGTAGCATCTTGGTATTGTTGATATTCGCTGACCAAATCGTTCATGTTGGATTCGGCTTCAGTGAATTCCATTTCGTCCATGCCTTCACCTGTGTACCAGTGAAGAAAAGCCTTTCGGCGGAACATAGCTGTGAATTGTTCCGAAATTCGTTTGAAGAGTTCTTGAATGGCTGTGCTGTTACCAATGAAAGTAGCAGACATCTTAAGACCACGTGGTGGAATATCGCAGACAGCGGTCTTAACGTTGTTCGGGATCCATTCAACGAAGTATGATGAGTTCTTGTTTTGAACGTTCAACATTTGTTCATCGACTTCCTTCATCGACATACGACCTCGGAAGATAGCAGCAACAGTCAAATATCGACCATGTCGA                     ]
[-] EMBL CD136032             [          TTCACCACCTTCACCTTCTTCTTCAGCCGTAGCATCTTGGTATTGTTGATATTCGCTGACCAAATCGTTCATGTTGGATTCGGCTTCAGTGAATTCCATTTCGTCCATGCCTTCACCTGTGTACCAGTGAAGAAAAGCCTTTCGGCGGAACATGGCTGTGAATTGTTCCGAAATTCGTTTGAAGAGTTCTTGAATGGCTGTGCTGTTACCAATGAAAGTAGCAGACATCTTAAGACCACGTGGTGGAATATCGCAGACAGCGGTCTTAACGTTGTTCGGGATCCATTCAACGAAGTATGATGAGTTCTTGTTTTGAACGTTCAACATTTGTTCATCGACTTCCTTCATCGACATACGACCTCGGAAGATAGCAGCAACAGTCAAATATCGACCATGTCGAGGATCACAAGCAGCCATCATG]




>consensus_7085#1
CGCCTTCTTCTTCACCACCTTCACCTTCTTCTTCAGCCGTAGCATCTTGGTATTGTTGAT
ATTCGCTGACCAAATCGTTCATGTTGGATTCGGCTTCAGTGAATTCCATTTCGTCCATGC
CTTCACCTGTGTACCAGTGAAGAAAAGCCTTTCGGCGGAACATAGCTGTGAATTGTTCCG
AAATTCGTTTGAAGAGTTCTTGAATGGCTGTGCTGTTACCAATGAAAGTAGCAGACATCT
TAAGACCACGTGGTGGAATATCGCAGACAGCGGTCTTAACGTTGTTCGGGATCCATTCAA
CGAAGTATGATGAGTTCTTGTTTTGAACGTTCAACATTTGTTCATCGACTTCCTTCATCG
ACATACGACCTCGGAAGATAGCAGCAACAGTCAAATATCGACCATGTCGAGGATCACAAG
CAGCCATCATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7085#0      ------------------------------------------------------------
consensus_7085#1      CGCCTTCTTCTTCACCACCTTCACCTTCTTCTTCAGCCGTAGCATCTTGGTATTGTTGAT 60
                                                                                  

consensus_7085#0      -TTCGCTAACCAAGTCGTTCATGTTCGATTCAGCTTCAGTGAATTCCATTTCATCCATAC 59
consensus_7085#1      ATTCGCTGACCAAATCGTTCATGTTGGATTCGGCTTCAGTGAATTCCATTTCGTCCATGC 120
                       ****** ***** *********** ***** ******************** ***** *

consensus_7085#0      CTTCACCAGTGTACCAGTGAAGAAAAGCCTTTCGACGGAACATAGCTGTGAATTGTTCCG 119
consensus_7085#1      CTTCACCTGTGTACCAGTGAAGAAAAGCCTTTCGGCGGAACATAGCTGTGAATTGTTCCG 180
                      ******* ************************** *************************

consensus_7085#0      AGATACGTTTGAATAATTCTTGGATGGCAGTGCTGTTGCCGATGAATGTGGCGGACATTT 179
consensus_7085#1      AAATTCGTTTGAAGAGTTCTTGAATGGCTGTGCTGTTACCAATGAAAGTAGCAGACATCT 240
                      * ** ******** * ****** ***** ******** ** ***** ** ** ***** *

consensus_7085#0      TCAATCCACGTGGTGGAATATCGCAAACAGCTGTTTTAACGTTGTTTGGAATCCATTCGA 239
consensus_7085#1      TAAGACCACGTGGTGGAATATCGCAGACAGCGGTCTTAACGTTGTTCGGGATCCATTCAA 300
                      * *  ******************** ***** ** *********** ** ******** *

consensus_7085#0      CGAAGTAGGACGAGTTCTTGTTTTGAACATTGAGCATTTGTTCATCGACTTCTTTCATTG 299
consensus_7085#1      CGAAGTATGATGAGTTCTTGTTTTGAACGTTCAACATTTGTTCATCGACTTCCTTCATCG 360
                      ******* ** ***************** ** * ****************** ***** *

consensus_7085#0      ACATACGACCACGGAAGATCGCAGCGACGGTCAAGTATCGACCATGTCGAGGATCACATG 359
consensus_7085#1      ACATACGACCTCGGAAGATAGCAGCAACAGTCAAATATCGACCATGTCGAGGATCACAAG 420
                      ********** ******** ***** ** ***** *********************** *

consensus_7085#0      CAGCCATCATGTTCTTGGCATCGAACATTTGTTGTGTCAATTCTGGAACAGTCAAGGCAC 419
consensus_7085#1      CAGCCATCATG------------------------------------------------- 431
                      ***********                                                 

consensus_7085#0      GGTATTGTTGTGAACCACGGGATGTTAATGGGGCGAAGCCAGGCATGAAGAAGTGAAGAC 479
consensus_7085#1      ------------------------------------------------------------
                                                                                  

consensus_7085#0      GTGGAAATGGAACCATGTTGACGGCCAATTTACGTAAATCAGCGTTCAATTGACCTGGAA 539
consensus_7085#1      ------------------------------------------------------------
                                                                                  

consensus_7085#0      ATCGAAGACAGGTGGTAACACCAGACATCGTAGCCGAGACAGGTGATTCAATCACCATAG 599
consensus_7085#1      ------------------------------------------------------------
                                                                                  

consensus_7085#0      GTTGGTGTTG 609
consensus_7085#1      ----------