These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7091#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 386 fasta sequence [AGCCATTGAGATCGACGAGTATATGAAGAGTGAACATTTTCAAGTTGGGAAGATTTCTGTACACGGTTTTCCCTATCAACCGACTTGCATCGCTTTTGATCCCGTTCAACGGATTGTTGCTGTTGGGACGAAGTCTGGGTTCATCCGAATTTTCGGAAAACCAGGTGTAGACTGCAGCATCTGTCATCCTTCAGCATCTGCTGTCCTTCAAATTTTCTTTCTCGTCAACGAGGGTGGGTTGGTCTCCATTTGTGGTGACGACGTTGCACACTTGTGGAACATACGCCAAAAGAATCCGGAAATTGTTCACTCGTTACAGTTCAAACGTGAACATAACCACAGTTTGACCTGCGGTCATCTTCCTGTTGGTAGCAGTTGGCTCTATT] [-] EMBL CD164031 [AGCCATTGAGATCGACGAGTATATGAAGAGTGAACATTTTCAAGTTGGGAAGATTTCTGTACACGGTTTTCCCTATCAACCGACTTGCATCGCTTTTGATCCCGTTCAACGGATTGTTGCTGTTGGGACGAAGTCTGGGTTCATCCGAATTTTCGGAAAACCAGGTGTAGACTGCAGCATCTGTCATCCTTCAGCATCTGCTGTCCTTCAAATT ] [+] EMBL CD062380 [ ACGAGTATTTGAAGAGTGAACATTTTCAAGTTGGGAAGATTTCTGTACACGGTTTTCCCTATCAACCGACTTGCATCGCTTTTGATCCCGTTCAACGGATTGTTGCTGTTGGGACGAAGTCTGGGTTCATCCGAATTTTCGGAAAACCAGGTGTAGACTGCAGCATCTGTCATCCTTCAGCATCTGCTGTCCTTCAAATTTTCTTTCTCGTCAACGAGGGTGGGTTGGTCTCCATTTGTGGTGACGACGTTGCACACTTGTGGAACATACGCCAAAAGAATCCGGAAATTGTTCACTCGTTACAGTTCAAACGTGAACATAACCACAGTTTGACCTGCGGTCATCTTCCTGTTGGTAGCAGTTGGCTCTATT] consensusID : consensus_7091#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [TATTTGAAGAGTGAACATTTTCAAGTTGGGAAGATTTCTGTACAAGGTTTTCCCTATCAACCGACTTGCATCGCTTTTGATCCCGTTCAACGGATTGTTGCTGTTGGGACGAAGTCTGGGTTCATCCGAATGTAAGTTACTCACATATTTTTACAGGCTTGGGATAGTTTCGGAAAACCAGGTGTAGACTGCAGCATCTGTCATCCTTCAGCATCTGCTGTCCTTCAAATTTTCTTTCTCGTCAACGAGGGTGGGTTGGTCTCCATTTGTGGTGACGACGTTGCACACTTGTGGAACATACGCCAAAAGAATCCGGAAATTGTTCACTCGTTACAGTTCAAACGTGAACATTTGACCTGCGGTCATCTT] [-] EMBL CD177951 [TATTTGAAGAGTGAACATTTTCAAGTTGGGAAGATTTCTGTACAAGGTTTTCCCTATCAACCGACTTGCATCGCTTTTGATCCCGTTCAACGGATTGTTGCTGTTGGGACGAAGTCTGGGTTCATCCGAATGTAAGTTACTCACATATTTTTACAGGCTTGGGATAGTTTCGGAAAACCAGGTGTAGACTGCAGCATCTGTCATCCTTCAGCATCTGCTGTCCTTCAAATTTTCTTTCTCGTCAACGAGGGTGGGTTGGTCTCCATTTGTGGTGACGACGTTGCACACTTGTGGAACATACGCCAAAAGAATCCGGAAATTGTTCACTCGTTACAGTTCAAACGTGAACATTTGACCTGCGGTCATCTT] consensusID : consensus_7091#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 329 fasta sequence [TGGGAGGAGGTCTGGGTTCATCCGAATGTAAGTTACTCACATATTTTTACAGGCTTGGGATAGTTTCGGAAAACCAGGTGTAGACTGCAGCATCTGTCATCCTCCAGCATCTGCTGTCCTTCAAATTTTCTTTCTCGTCAACGAGGGTGGGTTGGTCTCCATTTGTGGTGACGACGTTGCACACTTGTGGAACATACGCCAAAAGAATCCGGAAATTGTTCACTCGTTACAGTTCAAACGTGAACATGCTATTCCCCATACTGCGAGAATCAGTGCTCTTGATTTCATCACAATCCAGTCACCTTTCCTCACGTGGTTGGACCTCAATG] [+] EMBL CD190138 [TGGGAGGAGGTCTGGGTTCATCCGAATGTAAGTTACTCACATATTTTTACAGGCTTGGGATAGTTTCGGAAAACCAGGTGTAGACTGCAGCATCTGTCATCCTCCAGCATCTGCTGTCCTTCAAATTTTCTTTCTCGTCAACGAGGGTGGGTTGGTCTCCATTTGTGGTGACGACGTTGCACACTTGTGGAACATACGCCAAAAGAATCCGGAAATTGTTCACTCGTTACAGTTCAAACGTGAACATGCTATTCCCCATACTGCGAGAATCAGTGCTCTTGATTTCATCACAATCCAGTCACCTTTCCTCACGTGGTTGGACCTCAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7091#0 AGCCATTGAGATCGACGAGTATATGAAGAGTGAACATTTTCAAGTTGGGAAGATTTCTGT 60 consensus_7091#1 -------------------TATTTGAAGAGTGAACATTTTCAAGTTGGGAAGATTTCTGT 41 consensus_7091#2 ------------------------------------------------------------ consensus_7091#0 ACACGGTTTTCCCTATCAACCGACTTGCATCGCTTTTGATCCCGTTCAACGGATTGTTGC 120 consensus_7091#1 ACAAGGTTTTCCCTATCAACCGACTTGCATCGCTTTTGATCCCGTTCAACGGATTGTTGC 101 consensus_7091#2 ------------------------------------------------------------ consensus_7091#0 TGTTGGGACGAAGTCTGGGTTCATCCGAAT------------------------------ 150 consensus_7091#1 TGTTGGGACGAAGTCTGGGTTCATCCGAATGTAAGTTACTCACATATTTTTACAGGCTTG 161 consensus_7091#2 ---TGGGAGGAGGTCTGGGTTCATCCGAATGTAAGTTACTCACATATTTTTACAGGCTTG 57 ***** ** ****************** consensus_7091#0 ------TTTCGGAAAACCAGGTGTAGACTGCAGCATCTGTCATCCTTCAGCATCTGCTGT 204 consensus_7091#1 GGATAGTTTCGGAAAACCAGGTGTAGACTGCAGCATCTGTCATCCTTCAGCATCTGCTGT 221 consensus_7091#2 GGATAGTTTCGGAAAACCAGGTGTAGACTGCAGCATCTGTCATCCTCCAGCATCTGCTGT 117 **************************************** ************* consensus_7091#0 CCTTCAAATTTTCTTTCTCGTCAACGAGGGTGGGTTGGTCTCCATTTGTGGTGACGACGT 264 consensus_7091#1 CCTTCAAATTTTCTTTCTCGTCAACGAGGGTGGGTTGGTCTCCATTTGTGGTGACGACGT 281 consensus_7091#2 CCTTCAAATTTTCTTTCTCGTCAACGAGGGTGGGTTGGTCTCCATTTGTGGTGACGACGT 177 ************************************************************ consensus_7091#0 TGCACACTTGTGGAACATACGCCAAAAGAATCCGGAAATTGTTCACTCGTTACAGTTCAA 324 consensus_7091#1 TGCACACTTGTGGAACATACGCCAAAAGAATCCGGAAATTGTTCACTCGTTACAGTTCAA 341 consensus_7091#2 TGCACACTTGTGGAACATACGCCAAAAGAATCCGGAAATTGTTCACTCGTTACAGTTCAA 237 ************************************************************ consensus_7091#0 ACGTGAACATAACCACAGTTTGACCTGCGGTCATCT-TCCTGTTGGTAGCAGTTGGCTCT 383 consensus_7091#1 ACGTGAACAT---------TTGACCTGCGGTCATCT-T---------------------- 369 consensus_7091#2 ACGTGAACATG-CTATTCCCCATACTGCGAGAATCAGTGCTCTTGATTTCATCACAATCC 296 ********** ***** *** * consensus_7091#0 ATT------------------------------ 386 consensus_7091#1 --------------------------------- consensus_7091#2 AGTCACCTTTCCTCACGTGGTTGGACCTCAATG 329 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||