These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7119#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 641 fasta sequence [GATGATGACGATGATAATACTGAGTGCGAATTGATTGGTTTATAATCTCCCATTAATTTGTTCAAACTATATGCATTTGTACTAGTGACTGACTCCGTTCGAGGGGATGATTGTAAATTATTACTTGGCTCACAACCGTAATAAATAGGTAACATGGCATGGGGCATAGAAGCATATGCACGAGGCACTGAAGTATGAAACGATCTATTGTTCTGTGTTTCGGGTGTTGAATTGGTTACTGTCATGATAGTTTTGCTCGATAATGAGGTATTACATGCTGATGAGCTGGAATTTGACACTTCAGCCGGAAATACACCACGGTCCGAAATAGATTCAACACTTTTCTTAGACTTTGGATTGTTAGAGTCAAGAAAAGCAGCTCCTATATGATAGTCTATGGGCAGTTGCGTCTCATAACCTGAAAGGCTACTACTTCGCGTAGAGCCACCAGTCTCCAAAACGTCCCACAATGGTTTCCGGTTATTATGTAGTGGTTTTTCCTTCACATCAGACGGATTAATCGCCGGAATCGCTTCCAATGTTTTGGGCTCGCTTGTAGAACATTGACTACGGTTAGAATGCTTTGAATGCGAAACGTGCCTAAACAAACTTCTCAGTCCTTTTTTCTTCGACGACTTTCC] [+] EMBL CD129533 [GATGATGACGATGATAATACTGAGTGCGAATTGATTGGTTTATAATCTCCCATTAATTTGTTCAAACTATATGCATTTGTACTAGTGACTGACTCCGTTCGAGGGGATGATTGTAAATTATTACTTGGCTCACAACCGTAATAAATAGGTAACATGGCATGGGGCATAGAAGCATATGCACGAGGCACTGAAGTATGAAACGATCTATTGTTCTGTGTTTCGGGTGTTGAATTGGTTACTGTCATGATAGTTTTGCTCGATAATGAGGTATTACATGCTGATGAGCTGGAATTTGACACTTCAGCCGGAAATACACCACGGTCCGAAATAGATTCAACACTTTTCTTAGACTTTGGATTGTTAGAGTCAAGAAAAGCAGCTCCTATATGATAGTCTATGGGCAGTTGCGTCTCATAACCTGAAAGGCTACTACTTCGCGTAGAGCCACCAGTCTCCAAAACGTCCCACAATGGTTTCCGGTTATTATGTAGTGGTTTTTCCTTCACATCAGACGGATTAATCGCCGGAATCGCTTCCAATGTTTTGGGCTCGCTTGTAGAACATTGACTACGGTTAGAATGCTTTGAATGCGAAACGTGCCTAAACA ] [+] EMBL CD187204 [ TTTTGCTCGATAATGAGGTATTACATGCTGATGAGCTGGAATTTGACACTTCAGCCGGAAATACACCACGGTCCGAAATAGATTCAACACTTTTCTTAGACTTTGGATTGTTAGAGTCAAGAAAAGCAGCTCCTATATGATAGTCTATGGGCAGTTGCGTCTCATAACCTGAAAGGCTACTACTTCGCGTAGAGCCACCAGTCTCCAAAACGTCCCACAATGGTTTCCGGTTATTATGTAGTGGTTTTTCCTTCACATCAGACGGATTAATCGCCGGAATCGCTTCCAATGTTTTGGGCTCGCTTGTAGAACATTGACTACGGTTAGAATGCTTTGAATGCGAAACGTGCCTAAACAAACTTCTCAGTCCTTTTTTCTTCGACGACTTTCC] consensusID : consensus_7119#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 335 fasta sequence [ATGGGGCATAGAAGCATATGCACGAGGCACTGAAGTATGAAACGATCTATTGTTCTGTGTTTCGGGTGTTGAATTGGTTACTGTCATGATAGTTTTGCTGGAACCAAAATGGAAAATGATGAAAATATTGTAAGACATAACAAAAGTATTTGGTTAGAGTAGCAACACTAATCGGAACGACTACCAACCACAGTAACGCATCGTTTCGATAATAACACGATTTCACCTCAGTTAAGAACGACTAATTTATTTATAACATGAGATAGTACTAAGTAACTGTGATGGATGCATTGATGCGAAAGACAAGAATCTAATACAATAGCTGGATTTTAATA] [+] EMBL CD110922 [ATGGGGCATAGAAGCATATGCACGAGGCACTGAAGTATGAAACGATCTATTGTTCTGTGTTTCGGGTGTTGAATTGGTTACTGTCATGATAGTTTTGCTGGAACCAAAATGGAAAATGATGAAAATATTGTAAGACATAACAAAAGTATTTGGTTAGAGTAGCAACACTAATCGGAACGACTACCAACCACAGTAACGCATCGTTTCGATAATAACACGATTTCACCTCAGTTAAGAACGACTAATTTATTTATAACATGAGATAGTACTAAGTAACTGTGATGGATGCATTGATGCGAAAGACAAGAATCTAATACAATAGCTGGATTTTAATA] [+] EMBL CD111046 [ TGGGGCATAGAAGCATATGCACGAGGCACTGAAGTATGAAACGATCTATTGTTCTGTGTTTCGGGTGTTGAATTGGTTACTGTCATGATAGTTTTGCTGGAACCAAAATGGAAAATGATGAAAATATTGTAAGACATAACAAAAGTATTTGGTTAGAGTAGCAACACTAATCGGAACGACTACCAACCACAGTAACGCATCGTTTCGATAATAACACGATTTCACCTCAGTTAAGAACGACTAATTTATTTATAACATGAGATAGTACTAAGTAACTGTGATGGATGCATTGATGCGAAAGACAAGAATCTAATACAATAGCTGGATTTTAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7119#0 GATGATGACGATGATAATACTGAGTGCGAATTGATTGGTTTATAATCTCCCATTAATTTG 60 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 TTCAAACTATATGCATTTGTACTAGTGACTGACTCCGTTCGAGGGGATGATTGTAAATTA 120 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 TTACTTGGCTCACAACCGTAATAAATAGGTAACATGGCATGGGGCATAGAAGCATATGCA 180 consensus_7119#1 --------------------------------------ATGGGGCATAGAAGCATATGCA 22 ********************** consensus_7119#0 CGAGGCACTGAAGTATGAAACGATCTATTGTTCTGTGTTTCGGGTGTTGAATTGGTTACT 240 consensus_7119#1 CGAGGCACTGAAGTATGAAACGATCTATTGTTCTGTGTTTCGGGTGTTGAATTGGTTACT 82 ************************************************************ consensus_7119#0 GTCATGATAGTTTTGCTCGA--TAATGAGGTATTACATGCTGATGAGCTGGAATTTGACA 298 consensus_7119#1 GTCATGATAGTTTTGCTGGAACCAAAATGGAAAATGATGAAAATATTGTAAGACATAACA 142 ***************** ** ** ** * *** ** * * * *** consensus_7119#0 C-----TTCAGCCGGAAATACACCACGGTCCGAAATAGATTCAACACTTTTCTTAGACTT 353 consensus_7119#1 AAAGTATTTGGTTAGAGTAGCAACACTAATCGGAACGACTACCA-ACCACAGTAACGCAT 201 ** * ** ** *** ** ** * * * ** * * * * consensus_7119#0 TGGATTGTTAGAGTCAAGAAAAGCAGCTCCTATATGATAGTCTA--TGGGCAGTTGCGTC 411 consensus_7119#1 CGTTTCGATAATAACACGATTT-CACCTCAGTTAAGAACGACTAATTTATTTATAACATG 260 * * * ** ** ** ** *** ** ** * *** * * * * consensus_7119#0 TCATAACCTGAAAGGCTACTACTTCGCGTAGAGCCACCAGTCTCCAAAACGTCCCACAAT 471 consensus_7119#1 AGATAGTACTAAGTAACTGTGATGGATGCATTGATGCGAAAGACAAGAATCTAATACAAT 320 *** ** * * * * * * * * * ** * ***** consensus_7119#0 GGTTTCCGGTTATTATGTAGTGGTTTTTCCTTCACATCAGACGGATTAATCGCCGGAATC 531 consensus_7119#1 AGCTGGATTTTAATA--------------------------------------------- 335 * * *** ** consensus_7119#0 GCTTCCAATGTTTTGGGCTCGCTTGTAGAACATTGACTACGGTTAGAATGCTTTGAATGC 591 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 GAAACGTGCCTAAACAAACTTCTCAGTCCTTTTTTCTTCGACGACTTTCC 641 consensus_7119#1 -------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||