These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7124#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 437 fasta sequence [TTTTTTTTTTTTTTTTTTTTNTAAGCTTTCTGGAAAATAAAGAAGCGATGTTTATTGTAAAAATAAAAATTAGATTGATTGATAGGGATTTTTACAAAGAAAATAATGTTGGTCATCAAGTTGCCTAGATCTGCAGACGAGATTTTCCAGACAACCGTCATATACCCAGATATGATTTAAATGTTTGACAACAAATTATTCGATTCACAGTCTTTGGAATTTGTAATTGACTACTATTAATTCCAAAGACTGTTTAACCTCATCCTCCACCAGCCATTGGTGGAGCACTTGGAGCACCTCTACAGCCTCCAAATCCACCAAAACGTCCAGGTGGCCGAGGTGGTCTTCCATCCCATGAATTTCTTTGGACTAGATGTTTTCCTGGCGAAAAAGGTCTAAAGGTAAGAGTGTCCGAATAAACAGACAAATGATGTTTG] [+] EMBL AI395473 [TTTTTTTTTTTTTTTTTTTTNTAAGCTTTCTGGAAAATAAAGAAGCGATGTTTATTGTAAAAATAAAAATTAGATTGATTGATAGGGATTTTTACAAAGAAAATAATGTTGGTCATCAAGTTGCCTAGATCTGCAGACGAGATTTTCCAGACAACCGTCATATACCCAGATATGATTTAAATGTTTGACAACAAATTATTCGATTCACAGTCTTTGGAATTTGTAATTGACTACTATTAATTCCAAAGACTGTTTAACCTCATCCTCCACCAGCCATTGGTGGAGCACTTGGAGCACCTCTACAGCCTCCAAATCCACCAAAACGTCCAGGTGGCCGAGGTGGTCTTCCATCCCATGAATTTCTTTGGACTAGATGTTTTCCTGGCGAAAAAGGTCTAAAGGTAAGAGTGTCCGAATAAACAGACAAATGATGTTTG] [+] EMBL AI395540 [TTTTTTTTTTTTTTTTTTTTNTAAGNTTTCTGGAAAATAAAGAAGCGATGTTTATTGTAAAAATAAAAATTAGATTGATTGATAGGGATTTTTACAAAGAAAATAATGTTGGTCATCAAGTTGCCTAGATCTGCAGACGAGATTTTCCAGACAACCGTCATATACCCAGATATGATTTAAATGTTTGACAACAAATTATTCGATTCACAGTCTTTGGAATTTGTAATTGACTACTATTAATTCCAAAGACTGTTTAACCTCATCCTCCACCAGCCATTGGTGGAGCACTTGGGGCACCTCTACAGCCTCCAAATCCACCAAAACGTCCAGGTGGGCGAG ] consensusID : consensus_7124#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 418 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTCTGAAAAATAAAGAAGCGATGTTTATTGTAAAAATAAAAATTAGATTGATTGATTGATAGGGATTTTTACAAAGAAACTAATGTTGGTCATCAAGTTGTCTAGATCTGCAGACGAGATTTTCCAGACAACCGTCATATACCAAAATAGAATTTAAAGGTTCGACAACAAATTATTTGATTCACAGTCTTTGGAATTTGTAAGTGACAACTATTAATTCCAAAGACTGTTTAACCTCATCCTCCACCAGCCATTGGTGGAGCACTTGGAGCACCTCTACAGCCTCCGAATCCACCAAAACGTCCAGGTGGCCGAGT-GGGTCTTCCATCCCATGAATTTCCTTGATTAGATGTTTTCTGGCGAAAAAGGTCTAAAGGTAAGAGGGTCTGAATATACA] [+] EMBL AI395261 [TTTTTTTTTTTTTTTTTTTTTTTCTGAAAAATAAAGAAGCGATGTTTATTGTAAAAATAAAAATTAGATTGATTGATTGATAGGGATTTTTACAAAGAAACTAATGTTGGTCATCAAGTTGTCTAGATCTGCAGACGAGATTTTCCAGACAACCGTCATATACCAAAATAGAATTTAAAGGTTCGACAACAAATTATTTGATTCACAGTCTTTGGAATTTGTAAGTGACAACTATTAATTCCAAAGACTGTTTAACCTCATCCTCCACCAGCCATTGGTGGAGCACTTGGAGCACCTCTACAGCCTCCGAATCCACCAAAACGTCCAGGTGGCCGAGT GGGTCTTCCATCCCATGAATTTCCTTGATTAGATGTTTTCTGGCGAAAAAGGTCTAAAGGTAAGAGGGTCTGAATATACA] [+] EMBL AI395270 [TTTTTTTTTTTTTTTTTTTTTTTCTGAAAAATAAAGAAGCGATGTTTATTGTAAAAATAAAAATTAGATTGATTGATTGATAGGGATTTTTACAAAGAAACTAATGTTGGTCATCAAGTTGTCTAGATCTGCAGACGAGATTTTCCAGACAACCGTCATATACCAAAATAGAATTTAAAGGTTCGACAACAAATTATTTGATTCACAGTCTTTGGAATTTGTAAGTGACAACTATTAATTCCAAAGACTGTTTAACCTCATCCTCCACCAGCCATTGGTGGAGCACTTGGNGCACCTCTACAGCCTCCGAATCCACCAGAACGTCCAGGTGCGCGAGTCGGGTCTTCCATCCCATGGAATTCCTTGATTAGATGGTTTCTGGCGAAATAGGTCAACAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7124#0 TTTTTTTTTTTTTTTTTTTTNTAAGCTTTCTGGAAAATAAAGAAGCGATGTTTATTGTAA 60 consensus_7124#1 --TTTTTTTTTTTTTTTTTTTT----TTTCTGAAAAATAAAGAAGCGATGTTTATTGTAA 54 ****************** * ****** *************************** consensus_7124#0 AAATAAAAATTAGATTGATTGAT----AGGGATTTTTACAAAGAAAATAATGTTGGTCAT 116 consensus_7124#1 AAATAAAAATTAGATTGATTGATTGATAGGGATTTTTACAAAGAAACTAATGTTGGTCAT 114 *********************** ******************* ************* consensus_7124#0 CAAGTTGCCTAGATCTGCAGACGAGATTTTCCAGACAACCGTCATATACCCAGATATGAT 176 consensus_7124#1 CAAGTTGTCTAGATCTGCAGACGAGATTTTCCAGACAACCGTCATATACCAAAATAGAAT 174 ******* ****************************************** * *** ** consensus_7124#0 TTAAATGTTTGACAACAAATTATTCGATTCACAGTCTTTGGAATTTGTAATTGACTACTA 236 consensus_7124#1 TTAAAGGTTCGACAACAAATTATTTGATTCACAGTCTTTGGAATTTGTAAGTGACAACTA 234 ***** *** ************** ************************* **** **** consensus_7124#0 TTAATTCCAAAGACTGTTTAACCTCATCCTCCACCAGCCATTGGTGGAGCACTTGGAGCA 296 consensus_7124#1 TTAATTCCAAAGACTGTTTAACCTCATCCTCCACCAGCCATTGGTGGAGCACTTGGAGCA 294 ************************************************************ consensus_7124#0 CCTCTACAGCCTCCAAATCCACCAAAACGTCCAGGTGGCCGAGGTGGTCTTCCATCCCAT 356 consensus_7124#1 CCTCTACAGCCTCCGAATCCACCAAAACGTCCAGGTGGCCGAGTGGGTCTTCCATCCCAT 354 ************** **************************** *************** consensus_7124#0 GAATTTCTTTGGACTAGATGTTTTCCTGGCGAAAAAGGTCTAAAGGTAAGAGTGTCCGAA 416 consensus_7124#1 GAATTTCCTTG-ATTAGATGTTTTC-TGGCGAAAAAGGTCTAAAGGTAAGAGGGTCTGAA 412 ******* *** * *********** ************************** *** *** consensus_7124#0 TAAACAGACAAATGATGTTTG 437 consensus_7124#1 TATACA--------------- 418 ** *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||