cluster # 7190

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Schistosoma mansoni
cluster # 7190 cluster # 7190 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7190#0 length = 944 sequences # 4

consensus_7190#1 length = 456 sequences # 1

consensusID : consensus_7190#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 944
fasta sequence

                              [GTTGGAATGGTTTGGGGTTGAGATTGAATGAACTGTGTTCCTGGAACAACTGAAACAGAAGCCATTACATTCGGAGCGATTGGTTGACTTTGAGGAACTTGTTGTTCTAACTGGTACTGCGGTTGTACTTGTGGCGCATAATCTTGAGAACAAGCTCCCAATGTTGGTCCAGGTGGTTGCACAATATGTGGAGCACCTACGGCCACAACAGCTACGCCTGGGTGTAACATAGGTTGATTTAATGTCGGAGTTGTCGTTGTTACTAAACCACCTTGTGCTAAAGCTGGAAACCCTGTTGAAGATACAGACCCTGTTGAACCTAAAAGTATCTGGGCTTGTTGAACGTTAGGCATAGAAGGACCAGTATTTGTACCCACGGGTAAAACGGGTGGTACAGTAGTTCCTGATCCAATAACAGTACCCATTATAGTGTGTGTAGAACACACGCTAGATGCAACCAAAAGCCGTTGTGGTTGTTGTTGAGTTTGGGGGTGAAGTTGTGGTTGGTAAAATGGTTGTTGTGGTGTTCCAGAACCGACGGTCCCATTTGGAAGAATGCCATGTTGTTGGTTGGAAAGCTGATAAACAACCTGATGAGTTGGAGTGGCAACTGGACAGGCTGAAGCGATTGCAGGTATTGTTGCATATGTAGTTTGAACAATATTAGCAGGCTGAGCAGGAGATGCAGTAACTGTCTGAGATGGCAACGCATTATGCCCAACTACACTAGGTGTTGTTGAGGAGGCATGGACAATTTGAATTACTTGACCACTTGGTGTTTGGTAGAACTGCATAGTAGCGGCTGTAGCAGTAACAGGCATTCTAGATGAAGAAGGCGGATTAATCGCTGTAGCAGAAGACTGAAGAGGTATGGTTCCACTAATGTTAAGTGATGAAATACATGTAGCAGCTATTTGCTGTTGAATGTGAAGTTGTACTTGTTC]

[+] EMBL CD115712             [GTTGGAATGGTTTGGGGTTGAGATTGAATGAACTGTGTTCCTGGAACAACTGAAACAGAAGCCATTACATTCGGAGCGATTGGTTGACTTTGAGGAACTTGTTGTTCTAACTGGTACTGCGGTTGTACTTGTGGCGCATAATCTTGAGAACAAGCTCCCAATGTTGGTCCAGGTGGTTGCACAATATGTGGAGCACCTACGGCCACAACAGCTACGCCTGGGTGTAACATAGGTTGATTTAATGTCGGAGTTGTCGTTGTTACTAAACCACCTTGTGCTAAAGCTGGAAACCCTGTTGAAGATACAGACCCTGTTGAACCTAAAAGTATCTGGGCTTGTTGAACGTTAGGCATAGAAGGACCAGTATTTGTACCCACGGGTAAAACGGGTGGTACAGTAGTTCCTGATCCAATAACAGTACCCATTATAGTGTGTGTAGAACACACGCTAGATGCAACCAAAAGCCGTTGTGGTTGTTGTTGAGTTTGGGGGTGAATGTGGGGTCTGTAAAATGGTTGTCGT                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD183377             [                                                                                                                                                                                                                                      AGGTTGATTTAATGTCGGAGTTGTCGTTGTTACTAAACCACCTTGTGCTAAAGCTGGAAACCCTGTTGAAGATACAGACCCTGTTGAGCCTAAAAGTATCTGGGCTTGTTGAACGTTAGGCATAGAAGGACCAGTATTTGTACCCACGGGTAAAACGGGTGGTACAGTAGTTCCTGATCCAATAACAGTACCCATTATAGTGGGTGTAGAACACACGCTAGATGCAACCAAAAGCCGTTGTGGTTGTTGTTGAGTTTGGGGGTGAAGTTGTGGTTGGTAAAATGGTTGTTGTGGTGTTCCAGAACCGACGGTCCCATTTGGAAGAATGCCATGTTGTTGGTTGGAAAGCTGATAAACAACCTGATGAGTTGGAGTGGCAACTGGACAGGCTGAAGCGATTGCAGGTATTGTTGCATATGTAGTTTGAACAATATTAGCAGGCTGAGCAGGAGATGCAGTAACTGTCTGAGATGGCAACGCATTATGCCCAACTACACTAGGTGTTGTTGAGGGAGCATGGACAATTTGAA TACTTGA                                                                                                                                                                                ]
[-] EMBL CD202111             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTGTTGAGTTTGGGGGTGAGGTTGTGGTTGGTAAAATGGTTGTTGTGGTGTTCCAGAACCGACGGTCCCATTTGGAAGAATGCCATGTTGTTGGTTGGAAAGCTGATAAACAACCTGATGAGTTGGAGTGGCAACTGGACAGGCTGAAGCGATTGCAGGTATTGTTGCATATGTAGTTTGAACAATATTAGCAGGCTGAGCAGTAGATGCAGTAACTGTCTGAGATGGCAACGCATTATGCCCAACTACACTAGGTGTTGTTGAGGAGGCATGGACAATTTGAATTACTTGACCACTTGGTGTTTGGTAGAACTGCATAGTAGCGGCTGTAGCAGTAACAGGCATTCTAGATGAAGAAGGCGGATTAATCGCTGTAGCAGAAGACTGAAGAGGTATGGTTCCACTAATGTTAAGTGATGAAATACATGTAGCAGCTATTTGCTGTTGAATGTGAAGTTGTACTTGTTC]
[+] EMBL CD201891             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CCTGATGAGTTGGAGTGGCAACTGGACAGGCTGAAGCGATTGCAGGTATTGTTGCATATGTAGTTTGAACAATATTAGCAGGCTGAGCAGGAGATGCAGTAACTGTCTGAGATGGCAACGCATTATGCCCAACTACACTAGGTGTTGTTGAGGAGGCATGGACAATTTGAATTACTTGACCACTTGGTGTTTGGTAGAACTGCATAGTAGCGGCTGTAGCAGTAACAGGCATTCTAGATGAAGAAGGCGGATTAATCGCTGTAGCAGAAGACTGAAGAGGTATGGTTCCACTAATGTTAAGTGATGAAATACATGTAGCAGCTATTTGCTGTTGAATGTGAAGTTGTACTTGTT ]




>consensus_7190#0
GTTGGAATGGTTTGGGGTTGAGATTGAATGAACTGTGTTCCTGGAACAACTGAAACAGAA
GCCATTACATTCGGAGCGATTGGTTGACTTTGAGGAACTTGTTGTTCTAACTGGTACTGC
GGTTGTACTTGTGGCGCATAATCTTGAGAACAAGCTCCCAATGTTGGTCCAGGTGGTTGC
ACAATATGTGGAGCACCTACGGCCACAACAGCTACGCCTGGGTGTAACATAGGTTGATTT
AATGTCGGAGTTGTCGTTGTTACTAAACCACCTTGTGCTAAAGCTGGAAACCCTGTTGAA
GATACAGACCCTGTTGAACCTAAAAGTATCTGGGCTTGTTGAACGTTAGGCATAGAAGGA
CCAGTATTTGTACCCACGGGTAAAACGGGTGGTACAGTAGTTCCTGATCCAATAACAGTA
CCCATTATAGTGTGTGTAGAACACACGCTAGATGCAACCAAAAGCCGTTGTGGTTGTTGT
TGAGTTTGGGGGTGAAGTTGTGGTTGGTAAAATGGTTGTTGTGGTGTTCCAGAACCGACG
GTCCCATTTGGAAGAATGCCATGTTGTTGGTTGGAAAGCTGATAAACAACCTGATGAGTT
GGAGTGGCAACTGGACAGGCTGAAGCGATTGCAGGTATTGTTGCATATGTAGTTTGAACA
ATATTAGCAGGCTGAGCAGGAGATGCAGTAACTGTCTGAGATGGCAACGCATTATGCCCA
ACTACACTAGGTGTTGTTGAGGAGGCATGGACAATTTGAATTACTTGACCACTTGGTGTT
TGGTAGAACTGCATAGTAGCGGCTGTAGCAGTAACAGGCATTCTAGATGAAGAAGGCGGA
TTAATCGCTGTAGCAGAAGACTGAAGAGGTATGGTTCCACTAATGTTAAGTGATGAAATA
CATGTAGCAGCTATTTGCTGTTGAATGTGAAGTTGTACTTGTTC

consensusID : consensus_7190#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 456
fasta sequence

                              [AACGTCTCTATTAGTTGATGACAAATGTTATGAATATTCAATACAAACCAATCATATTCGAACTTTAAACTCTCCTTATGATAGTCTACATACATACACTTATGCAGGATATATATATATATACGGGACAAACGTAAAGGGATAAGAATAAATACAATGCGCAGATTATTTAACACTTACGAAAAGTTGAATTTATAATGATCAATGGATAGCAGATATGAAAATAATGAAAAAAAGACTTGGACTGCTATTGAAGACACAATATTTAAGAAGTAGTCTTAATAAGGGGCAAAAAGCTGACTCAAATAATAAAAAAATACGAACGTCAGGAAGGTTGTAGCTGTAAATAATTCCCCAAAGCTGCAATCACCTAAAGGTGAAAAAAACACGGAAAAATTACCTTGTTGTACTAACTGGTACTGCGGTTGTACTTGTGGCGCATAATCTTGAGAACAA]

[+] EMBL CD077187             [AACGTCTCTATTAGTTGATGACAAATGTTATGAATATTCAATACAAACCAATCATATTCGAACTTTAAACTCTCCTTATGATAGTCTACATACATACACTTATGCAGGATATATATATATATACGGGACAAACGTAAAGGGATAAGAATAAATACAATGCGCAGATTATTTAACACTTACGAAAAGTTGAATTTATAATGATCAATGGATAGCAGATATGAAAATAATGAAAAAAAGACTTGGACTGCTATTGAAGACACAATATTTAAGAAGTAGTCTTAATAAGGGGCAAAAAGCTGACTCAAATAATAAAAAAATACGAACGTCAGGAAGGTTGTAGCTGTAAATAATTCCCCAAAGCTGCAATCACCTAAAGGTGAAAAAAACACGGAAAAATTACCTTGTTGTACTAACTGGTACTGCGGTTGTACTTGTGGCGCATAATCTTGAGAACAA]




>consensus_7190#1
AACGTCTCTATTAGTTGATGACAAATGTTATGAATATTCAATACAAACCAATCATATTCG
AACTTTAAACTCTCCTTATGATAGTCTACATACATACACTTATGCAGGATATATATATAT
ATACGGGACAAACGTAAAGGGATAAGAATAAATACAATGCGCAGATTATTTAACACTTAC
GAAAAGTTGAATTTATAATGATCAATGGATAGCAGATATGAAAATAATGAAAAAAAGACT
TGGACTGCTATTGAAGACACAATATTTAAGAAGTAGTCTTAATAAGGGGCAAAAAGCTGA
CTCAAATAATAAAAAAATACGAACGTCAGGAAGGTTGTAGCTGTAAATAATTCCCCAAAG
CTGCAATCACCTAAAGGTGAAAAAAACACGGAAAAATTACCTTGTTGTACTAACTGGTAC
TGCGGTTGTACTTGTGGCGCATAATCTTGAGAACAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7190#0      GTTGGAATGGTTTGGGGTTGAGATTGAATGAACTGTGTTCCTGGAACAACTGAAACAGAA 60
consensus_7190#1      ------------------------------------------------------------
                                                                                  

consensus_7190#0      GCCATTACATTCGGAGCGATTGGTTGACTTTGAGGAACTTGTTGTTCTAACTGGTACTGC 120
consensus_7190#1      ---------AACGTCTCTATTAGTTGA---TGACAAA-----TGTTATGA---ATATTCA 40
                                 **   * *** *****   ***  **     **** * *    ** *  

consensus_7190#0      GGTTGTACTTGTGGCGCATAATCTTGAGAACAAGCTCCCAATGTTGGTCCAGGTGGTTGC 180
consensus_7190#1      ATACAAACCAATCATATTCGAACTTTAAACT---CTCCTTATGATAGTCTACATACATAC 97
                            **   *        * *** * *     ****  *** * *** *  *   * *

consensus_7190#0      ACAATATGTGGAGCACCTACGGCCACAACAGCTACGCCTGGGTGTAACATAGGTTGATTT 240
consensus_7190#1      ACT-TATGCAGGATATATATATATATACGGGACAAACGTAAAGG-GATAAGAATAAATAC 155
                      **  ****  *   *  **     * *   *  *  * *    *  * *    *  **  

consensus_7190#0      AATGTCGGAGTTGTCGTTGTTACTAAACCACCTTGTGCTAAAGCTGGAAACCCTGTTGAA 300
consensus_7190#1      AATGCGCAGATTATT-TAACACTTACGAAAAGTTGAATTTATAATGATCAATGGATAGCA 214
                      ****      ** *  *      **    *  ***   * *   **   *     * * *

consensus_7190#0      GATACAGACCCTGTTGAACCTAAAAGTATCTGGGCT--TGTTGAACGTTAGGCATAGAAG 358
consensus_7190#1      GATATGAAAA-TAATGAA---AAAAAGACTTGGACTGCTATTGAAGACACAATATTTAAG 270
                      ****   *   *  ****   ****  *  *** **  * *****        **  ***

consensus_7190#0      GACCAGTATTTGTACCCACGGGTAAAACGGGTGGTACAGTAGTTCCTGATCCAATAACAG 418
consensus_7190#1      AAGTAGTCTTAATA---AGGGGCAAAA-AGCTGACTCAAATAATAAAAAAATACGAACGT 326
                       *  *** **  **   * *** ****  * **   **     *    *   *  ***  

consensus_7190#0      TACCCA--TTATAGTGTGTGTAGAACACACGCTAGATGCAACCA---AAAGCCGTTGTGG 473
consensus_7190#1      CAGGAAGGTTGTAGC-TGTAAATAATTCCCCAAAGCTGCAATCACCTAAAGGTGAAAAAA 385
                       *   *  ** ***  ***  * **  * *   ** ***** **   ****  *      

consensus_7190#0      TTGTTGTTGAGTTTGGGGGTGAAGTTGTGGTTGGTAAAATGGTTGTTGTGGTGTTCCAGA 533
consensus_7190#1      ACACGGAAAAATT--ACCTTGTTGTACTAACTGGTACTGCGGTTGTACTTGTGGCGCATA 443
                           *   * **      **  **  *   *****    ******  * ***   ** *

consensus_7190#0      ACCGACGGTCCCATTTGGAAGAATGCCATGTTGTTGGTTGGAAAGCTGATAAACAACCTG 593
consensus_7190#1      ATCTTGAGAACAA----------------------------------------------- 456
                      * *    *  * *                                               

consensus_7190#0      ATGAGTTGGAGTGGCAACTGGACAGGCTGAAGCGATTGCAGGTATTGTTGCATATGTAGT 653
consensus_7190#1      ------------------------------------------------------------
                                                                                  

consensus_7190#0      TTGAACAATATTAGCAGGCTGAGCAGGAGATGCAGTAACTGTCTGAGATGGCAACGCATT 713
consensus_7190#1      ------------------------------------------------------------
                                                                                  

consensus_7190#0      ATGCCCAACTACACTAGGTGTTGTTGAGGAGGCATGGACAATTTGAATTACTTGACCACT 773
consensus_7190#1      ------------------------------------------------------------
                                                                                  

consensus_7190#0      TGGTGTTTGGTAGAACTGCATAGTAGCGGCTGTAGCAGTAACAGGCATTCTAGATGAAGA 833
consensus_7190#1      ------------------------------------------------------------
                                                                                  

consensus_7190#0      AGGCGGATTAATCGCTGTAGCAGAAGACTGAAGAGGTATGGTTCCACTAATGTTAAGTGA 893
consensus_7190#1      ------------------------------------------------------------
                                                                                  

consensus_7190#0      TGAAATACATGTAGCAGCTATTTGCTGTTGAATGTGAAGTTGTACTTGTTC 944
consensus_7190#1      ---------------------------------------------------