These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7190#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 944 fasta sequence [GTTGGAATGGTTTGGGGTTGAGATTGAATGAACTGTGTTCCTGGAACAACTGAAACAGAAGCCATTACATTCGGAGCGATTGGTTGACTTTGAGGAACTTGTTGTTCTAACTGGTACTGCGGTTGTACTTGTGGCGCATAATCTTGAGAACAAGCTCCCAATGTTGGTCCAGGTGGTTGCACAATATGTGGAGCACCTACGGCCACAACAGCTACGCCTGGGTGTAACATAGGTTGATTTAATGTCGGAGTTGTCGTTGTTACTAAACCACCTTGTGCTAAAGCTGGAAACCCTGTTGAAGATACAGACCCTGTTGAACCTAAAAGTATCTGGGCTTGTTGAACGTTAGGCATAGAAGGACCAGTATTTGTACCCACGGGTAAAACGGGTGGTACAGTAGTTCCTGATCCAATAACAGTACCCATTATAGTGTGTGTAGAACACACGCTAGATGCAACCAAAAGCCGTTGTGGTTGTTGTTGAGTTTGGGGGTGAAGTTGTGGTTGGTAAAATGGTTGTTGTGGTGTTCCAGAACCGACGGTCCCATTTGGAAGAATGCCATGTTGTTGGTTGGAAAGCTGATAAACAACCTGATGAGTTGGAGTGGCAACTGGACAGGCTGAAGCGATTGCAGGTATTGTTGCATATGTAGTTTGAACAATATTAGCAGGCTGAGCAGGAGATGCAGTAACTGTCTGAGATGGCAACGCATTATGCCCAACTACACTAGGTGTTGTTGAGGAGGCATGGACAATTTGAATTACTTGACCACTTGGTGTTTGGTAGAACTGCATAGTAGCGGCTGTAGCAGTAACAGGCATTCTAGATGAAGAAGGCGGATTAATCGCTGTAGCAGAAGACTGAAGAGGTATGGTTCCACTAATGTTAAGTGATGAAATACATGTAGCAGCTATTTGCTGTTGAATGTGAAGTTGTACTTGTTC] [+] EMBL CD115712 [GTTGGAATGGTTTGGGGTTGAGATTGAATGAACTGTGTTCCTGGAACAACTGAAACAGAAGCCATTACATTCGGAGCGATTGGTTGACTTTGAGGAACTTGTTGTTCTAACTGGTACTGCGGTTGTACTTGTGGCGCATAATCTTGAGAACAAGCTCCCAATGTTGGTCCAGGTGGTTGCACAATATGTGGAGCACCTACGGCCACAACAGCTACGCCTGGGTGTAACATAGGTTGATTTAATGTCGGAGTTGTCGTTGTTACTAAACCACCTTGTGCTAAAGCTGGAAACCCTGTTGAAGATACAGACCCTGTTGAACCTAAAAGTATCTGGGCTTGTTGAACGTTAGGCATAGAAGGACCAGTATTTGTACCCACGGGTAAAACGGGTGGTACAGTAGTTCCTGATCCAATAACAGTACCCATTATAGTGTGTGTAGAACACACGCTAGATGCAACCAAAAGCCGTTGTGGTTGTTGTTGAGTTTGGGGGTGAATGTGGGGTCTGTAAAATGGTTGTCGT ] [+] EMBL CD183377 [ AGGTTGATTTAATGTCGGAGTTGTCGTTGTTACTAAACCACCTTGTGCTAAAGCTGGAAACCCTGTTGAAGATACAGACCCTGTTGAGCCTAAAAGTATCTGGGCTTGTTGAACGTTAGGCATAGAAGGACCAGTATTTGTACCCACGGGTAAAACGGGTGGTACAGTAGTTCCTGATCCAATAACAGTACCCATTATAGTGGGTGTAGAACACACGCTAGATGCAACCAAAAGCCGTTGTGGTTGTTGTTGAGTTTGGGGGTGAAGTTGTGGTTGGTAAAATGGTTGTTGTGGTGTTCCAGAACCGACGGTCCCATTTGGAAGAATGCCATGTTGTTGGTTGGAAAGCTGATAAACAACCTGATGAGTTGGAGTGGCAACTGGACAGGCTGAAGCGATTGCAGGTATTGTTGCATATGTAGTTTGAACAATATTAGCAGGCTGAGCAGGAGATGCAGTAACTGTCTGAGATGGCAACGCATTATGCCCAACTACACTAGGTGTTGTTGAGGGAGCATGGACAATTTGAA TACTTGA ] [-] EMBL CD202111 [ TTGTTGAGTTTGGGGGTGAGGTTGTGGTTGGTAAAATGGTTGTTGTGGTGTTCCAGAACCGACGGTCCCATTTGGAAGAATGCCATGTTGTTGGTTGGAAAGCTGATAAACAACCTGATGAGTTGGAGTGGCAACTGGACAGGCTGAAGCGATTGCAGGTATTGTTGCATATGTAGTTTGAACAATATTAGCAGGCTGAGCAGTAGATGCAGTAACTGTCTGAGATGGCAACGCATTATGCCCAACTACACTAGGTGTTGTTGAGGAGGCATGGACAATTTGAATTACTTGACCACTTGGTGTTTGGTAGAACTGCATAGTAGCGGCTGTAGCAGTAACAGGCATTCTAGATGAAGAAGGCGGATTAATCGCTGTAGCAGAAGACTGAAGAGGTATGGTTCCACTAATGTTAAGTGATGAAATACATGTAGCAGCTATTTGCTGTTGAATGTGAAGTTGTACTTGTTC] [+] EMBL CD201891 [ CCTGATGAGTTGGAGTGGCAACTGGACAGGCTGAAGCGATTGCAGGTATTGTTGCATATGTAGTTTGAACAATATTAGCAGGCTGAGCAGGAGATGCAGTAACTGTCTGAGATGGCAACGCATTATGCCCAACTACACTAGGTGTTGTTGAGGAGGCATGGACAATTTGAATTACTTGACCACTTGGTGTTTGGTAGAACTGCATAGTAGCGGCTGTAGCAGTAACAGGCATTCTAGATGAAGAAGGCGGATTAATCGCTGTAGCAGAAGACTGAAGAGGTATGGTTCCACTAATGTTAAGTGATGAAATACATGTAGCAGCTATTTGCTGTTGAATGTGAAGTTGTACTTGTT ] consensusID : consensus_7190#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 456 fasta sequence [AACGTCTCTATTAGTTGATGACAAATGTTATGAATATTCAATACAAACCAATCATATTCGAACTTTAAACTCTCCTTATGATAGTCTACATACATACACTTATGCAGGATATATATATATATACGGGACAAACGTAAAGGGATAAGAATAAATACAATGCGCAGATTATTTAACACTTACGAAAAGTTGAATTTATAATGATCAATGGATAGCAGATATGAAAATAATGAAAAAAAGACTTGGACTGCTATTGAAGACACAATATTTAAGAAGTAGTCTTAATAAGGGGCAAAAAGCTGACTCAAATAATAAAAAAATACGAACGTCAGGAAGGTTGTAGCTGTAAATAATTCCCCAAAGCTGCAATCACCTAAAGGTGAAAAAAACACGGAAAAATTACCTTGTTGTACTAACTGGTACTGCGGTTGTACTTGTGGCGCATAATCTTGAGAACAA] [+] EMBL CD077187 [AACGTCTCTATTAGTTGATGACAAATGTTATGAATATTCAATACAAACCAATCATATTCGAACTTTAAACTCTCCTTATGATAGTCTACATACATACACTTATGCAGGATATATATATATATACGGGACAAACGTAAAGGGATAAGAATAAATACAATGCGCAGATTATTTAACACTTACGAAAAGTTGAATTTATAATGATCAATGGATAGCAGATATGAAAATAATGAAAAAAAGACTTGGACTGCTATTGAAGACACAATATTTAAGAAGTAGTCTTAATAAGGGGCAAAAAGCTGACTCAAATAATAAAAAAATACGAACGTCAGGAAGGTTGTAGCTGTAAATAATTCCCCAAAGCTGCAATCACCTAAAGGTGAAAAAAACACGGAAAAATTACCTTGTTGTACTAACTGGTACTGCGGTTGTACTTGTGGCGCATAATCTTGAGAACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7190#0 GTTGGAATGGTTTGGGGTTGAGATTGAATGAACTGTGTTCCTGGAACAACTGAAACAGAA 60 consensus_7190#1 ------------------------------------------------------------ consensus_7190#0 GCCATTACATTCGGAGCGATTGGTTGACTTTGAGGAACTTGTTGTTCTAACTGGTACTGC 120 consensus_7190#1 ---------AACGTCTCTATTAGTTGA---TGACAAA-----TGTTATGA---ATATTCA 40 ** * *** ***** *** ** **** * * ** * consensus_7190#0 GGTTGTACTTGTGGCGCATAATCTTGAGAACAAGCTCCCAATGTTGGTCCAGGTGGTTGC 180 consensus_7190#1 ATACAAACCAATCATATTCGAACTTTAAACT---CTCCTTATGATAGTCTACATACATAC 97 ** * * *** * * **** *** * *** * * * * consensus_7190#0 ACAATATGTGGAGCACCTACGGCCACAACAGCTACGCCTGGGTGTAACATAGGTTGATTT 240 consensus_7190#1 ACT-TATGCAGGATATATATATATATACGGGACAAACGTAAAGG-GATAAGAATAAATAC 155 ** **** * * ** * * * * * * * * * * ** consensus_7190#0 AATGTCGGAGTTGTCGTTGTTACTAAACCACCTTGTGCTAAAGCTGGAAACCCTGTTGAA 300 consensus_7190#1 AATGCGCAGATTATT-TAACACTTACGAAAAGTTGAATTTATAATGATCAATGGATAGCA 214 **** ** * * ** * *** * * ** * * * * consensus_7190#0 GATACAGACCCTGTTGAACCTAAAAGTATCTGGGCT--TGTTGAACGTTAGGCATAGAAG 358 consensus_7190#1 GATATGAAAA-TAATGAA---AAAAAGACTTGGACTGCTATTGAAGACACAATATTTAAG 270 **** * * **** **** * *** ** * ***** ** *** consensus_7190#0 GACCAGTATTTGTACCCACGGGTAAAACGGGTGGTACAGTAGTTCCTGATCCAATAACAG 418 consensus_7190#1 AAGTAGTCTTAATA---AGGGGCAAAA-AGCTGACTCAAATAATAAAAAAATACGAACGT 326 * *** ** ** * *** **** * ** ** * * * *** consensus_7190#0 TACCCA--TTATAGTGTGTGTAGAACACACGCTAGATGCAACCA---AAAGCCGTTGTGG 473 consensus_7190#1 CAGGAAGGTTGTAGC-TGTAAATAATTCCCCAAAGCTGCAATCACCTAAAGGTGAAAAAA 385 * * ** *** *** * ** * * ** ***** ** **** * consensus_7190#0 TTGTTGTTGAGTTTGGGGGTGAAGTTGTGGTTGGTAAAATGGTTGTTGTGGTGTTCCAGA 533 consensus_7190#1 ACACGGAAAAATT--ACCTTGTTGTACTAACTGGTACTGCGGTTGTACTTGTGGCGCATA 443 * * ** ** ** * ***** ****** * *** ** * consensus_7190#0 ACCGACGGTCCCATTTGGAAGAATGCCATGTTGTTGGTTGGAAAGCTGATAAACAACCTG 593 consensus_7190#1 ATCTTGAGAACAA----------------------------------------------- 456 * * * * * consensus_7190#0 ATGAGTTGGAGTGGCAACTGGACAGGCTGAAGCGATTGCAGGTATTGTTGCATATGTAGT 653 consensus_7190#1 ------------------------------------------------------------ consensus_7190#0 TTGAACAATATTAGCAGGCTGAGCAGGAGATGCAGTAACTGTCTGAGATGGCAACGCATT 713 consensus_7190#1 ------------------------------------------------------------ consensus_7190#0 ATGCCCAACTACACTAGGTGTTGTTGAGGAGGCATGGACAATTTGAATTACTTGACCACT 773 consensus_7190#1 ------------------------------------------------------------ consensus_7190#0 TGGTGTTTGGTAGAACTGCATAGTAGCGGCTGTAGCAGTAACAGGCATTCTAGATGAAGA 833 consensus_7190#1 ------------------------------------------------------------ consensus_7190#0 AGGCGGATTAATCGCTGTAGCAGAAGACTGAAGAGGTATGGTTCCACTAATGTTAAGTGA 893 consensus_7190#1 ------------------------------------------------------------ consensus_7190#0 TGAAATACATGTAGCAGCTATTTGCTGTTGAATGTGAAGTTGTACTTGTTC 944 consensus_7190#1 --------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||