These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7202#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence [GGATCGCTTCAACAGTGTAAAAGGTTTGAAATAGGAACAATAACAGGGCGGACTTGCATGCATATAGCAACAATCTCTTGCNNCACACAAACAATATTGTCATGCACTGTCCCATCGCCCTTGCTCACATCATAGCTGAATGATGTGAGCAAGAATCATACTAGTCATAATCAAAATCGAAAGCAGCACCGTAACGGGATCCATAAACCAAAGAAACAGCGATACCCATCACTTAAAGGCGTTGACCCTAAATTCCTAAGGAATATGAGGTTTGCAAAAAGCATAATAAACGCGGGAACAAAAA] [+] EMBL BE519452 [GGATCGCTTCAACAGTGTAAAAGGTTTGAAATAGGAACAATAACAGGGCGGACTTGCATGCATATAGCAACAATCTCTTGCNNCACACAAACAATATTGTCATGCACTGTCCCATCGCCCTTGCTCACATCATAGCTGAATGATGTGAGCAAGAATCATACTAGTCATAATCAAAATCGAAAGCAGCACCGTAACGGGATCCATAAACCAAAGAAACAGCGATACCCATCACTTAAAGGCGTTGACCCTAAATTCCTAAGGAATATGAGGTTTGCAAAAAGCATAATAAACGCGGGAACAAAAA] consensusID : consensus_7202#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 250 fasta sequence [AGTAGTGTGACATGGCGAAGAGCAAGAATCATACTAGTCATAATCAAAATCGAAAGCAGCACCGTAATGGGATCCATAAACCAAAGAAACAGCGATACCCATCACTTAAAGGCGTTGACCCTAAATTCCTAAGGAATATGAGGTTTGCCAAAAAGCATAATAAACGCGGGAACAAAAACGTTCAACCTGAAGTCACTCCTGCAGTACCAGAATGTAAATGATCTTAAGTGGTGTAAAGATGGAATAAATT] [+] EMBL AI067591 [AGTAGTGTGACATGGCGAAGAGCAAGAATCATACTAGTCATAATCAAAATCGAAAGCAGCACCGTAATGGGATCCATAAACCAAAGAAACAGCGATACCCATCACTTAAAGGCGTTGACCCTAAATTCCTAAGGAATATGAGGTTTGCCAAAAAGCATAATAAACGCGGGAACAAAAACGTTCAACCTGAAGTCACTCCTGCAGTACCAGAATGTAAATGATCTTA ] [+] EMBL SM948 [ TGTGATNTGGNGAAGAGCAAGAATCATACTAGTCATAATCAAAATCGAAAGCAGCACCGTAATGGGATCCATAAACCAAAGAAACAGNGATACCCATCACTTAAAGGCG TGGNCCTAAATTCCTAAGGAATATGAGGTTTGNCAAAAAGCATAATAAACGCGGGAACAAAAACGTCCAACCTGAAGTCACTCCTGCAGTACCAGAATGTAAATGATCTTAAGTGGTGTAAAGATGGAATAAATT] [-] EMBL CD139355 [ AGAATCATACTAGTCATAATCAAAATCGAAAGCAGCACCGTAATGGGATCCATAAACCAAAGAAACAGCGATACCCATCACTTAAAGGCGTTGACCCTAAATTCCTAAGGAATATGAGGTTTGCCAAAAAGCATAATAAACGCGGGAACAAAAACGTTCAACCTGAAGTCACTCCTGCAGTACCAGAATGTAAATGATCTTAAGTGGTGTA ] [+] EMBL CD193375 [ TAATGGGATCCATAAACCAAAGAAACAGCGATACCCATCACTTAAAGGCGTTGACCCTAAATTCCTAAGGAATATGAGGTTTGCCAAAAAGCATAATAAACGCGGGAACAAAAACGTTCAACCTGAAGTCACTCCTGCAGTACCAGAATGTA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7202#0 GGATCGCTTCAACAGTGTAAAAGGTTTGAAATAGGAACAATAACAGGGCGGACTTGCATG 60 consensus_7202#1 ------------------------------------------------------------ consensus_7202#0 CATATAGCAACAATCTCTTGCNNCACACAAACAATATTGTCATGCACTGTCCCATCGCCC 120 consensus_7202#1 ------------------------------------------------------------ consensus_7202#0 TTGCTCACATCATAGCTGAATGATGT-GAGCAAGAATCATACTAGTCATAATCAAAATCG 179 consensus_7202#1 --------AGTAGTGTGACATGGCGAAGAGCAAGAATCATACTAGTCATAATCAAAATCG 52 * * * *** * ********************************* consensus_7202#0 AAAGCAGCACCGTAACGGGATCCATAAACCAAAGAAACAGCGATACCCATCACTTAAAGG 239 consensus_7202#1 AAAGCAGCACCGTAATGGGATCCATAAACCAAAGAAACAGCGATACCCATCACTTAAAGG 112 *************** ******************************************** consensus_7202#0 CGTTGACCCTAAATTCCTAAGGAATATGAGGTTTGC-AAAAAGCATAATAAACGCGGGAA 298 consensus_7202#1 CGTTGACCCTAAATTCCTAAGGAATATGAGGTTTGCCAAAAAGCATAATAAACGCGGGAA 172 ************************************ *********************** consensus_7202#0 CAAAAA------------------------------------------------------ 304 consensus_7202#1 CAAAAACGTTCAACCTGAAGTCACTCCTGCAGTACCAGAATGTAAATGATCTTAAGTGGT 232 ****** consensus_7202#0 ------------------ consensus_7202#1 GTAAAGATGGAATAAATT 250 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||