These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7212#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 509 fasta sequence [GGAAATAGATGTAGATATTATGATCTTCAGCATGCAAAGGTTTTTCTACGAATGGTTTGTGAAAAACCTCACCATTAATTTCAATTGAATCGTCAAGCTCAACAACTTTCACTGGGTTTTCCGATGTCCTATCAACAAATGCATATCTCGGAACTGGAACACCTTCTCTCGTCAAGCACTCATAAACCCTTCTTCTGTCCATTAAAATGTATTGGGACTCAAGATCATTGACAAGGTAGGGTTTCCGAAGCTTCGAATAAGCAATAGCTTTTTTGAGGGGAAATCCTTCGGAATAAAAACTGACCAGTGCATCACAGATGGGCCATGACTCTATTGGTGAATCTAATATCATTTTCTCGTCAAATATTATTATCTTAATGTGCTGAAACTTGTCCATTCTTCGCAAAATTTCCTTCATTGGTTTTGACATGGCTTTCTTTGCCATTGCACAAACTCCTATCGTGACAACTACATCACTGTCGTCTGCCCTCTCATTCATACCTTAGTCA] [+] EMBL CD162886 [GGAAATAGATGTAGATATTATGATCTTCAGCATGCAAAGGTTTTTCTACGAATGGTTTGTGAAAAACCTCACCATTAATTTCAATTGAATCGTCAAGCTCAACAACTTTCACTGGGTTTTCCGATGTCCTATCAACAAATGCATATCTCGGAACTGGAACACCTTCTCTCGTCAAGCACTCATAAACCCTTCTTCTGTCCATTAAAATGTATTGGGACTCAAGATCATTGACAAGGTAGGGTTTCCGAAGCTTCGAATAAGCAATAGCTTTTTTGAGGGGAAATCCTTCGGAATAAAAACTGACCAGTGCATCACAGATGGGCCATGACTCTATTGGTGAATCTAATATCATTTTCTCGTCAAATATTATTATCTTAATGTGCTGAAACTTGTCCATTCTTCGCAAAATTTCCTTCATTGGTTTTGACATGGCTTTCTTTGCCATTGCACAAACTCCTATCGTGACAACTACATCACTGTCGTCTGCCCTCTCATTCATACCTTAGTCA] [+] EMBL CD111356 [ GTAGATATTATGATCTTCAGCATGCAAAGGTTTTTCTACGAATGGTTTGTGAAAAACCTCACCATTAATTTCAATTGAATCGTCAAGCTCAACAACTTTCACTGGGTTTTCCGATGTCCTATCAACAAATGCATATCTCGGAACTGGAACACCTTCTCTCGTCAAGCACTCATAAACCCTTCTTCTGTCCATTAAAATGTATTGGGACTCAAGATCATTGACAAGGTAGGGTTTCCGAAGCTTCGAATAAGCAATAGCTTTTTTGAGGGGAAATCCTTCGGAATAAAAACTGACCAGTGCATCACAGATGGGCCATGACTCTATTGGTGAATCTAATATCATTTTCTCGTCAAATATTATT ] [+] EMBL CD111241 [ GTAGATATTATGATCTTCAGCATGCAAAGGTTTTTCTACGAATGGTTTGTGAAAAACCTCACCATTAATTTCAATTGAATCGTCAAGCTCAACAACTTTCACTGGGTTTTCCGATGTCCTATCAACAAATGCATATCTCGGAACTGGAACACCTTCTCTCGTCAAGCACTCATAAACCCTTCTTCTGTCCATTAAAATGTATTGGGACTCAAGATCATTGACAAGGTAGGGTTTCCGAAGCTTCGAATAAGCAATAGCTTTTTTGAGGGGAAATCCTTCGGAATAAAAACTGACCAGTGCATCACAGATGGGCCATGACTCTATTGGTGAATCTAATATCATTTTCTCGTCAAATATTATT ] consensusID : consensus_7212#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 421 fasta sequence [GTAGATATTATGATCTTCAGCATGCAAAGGTTTTTCTACGAATGGTTTGTGAAAAACCTCACCATTAATCTGAAATAAAAATGTATACTTTATCCAACAGGTACTTCAATTGAATCGTCAAGCTCAACAACTTTCACTGGGTTTTCCGATGTCCTATCAACAAATGCATATCTCGGAACTGGAACACCTTCTCTCGTCAAGCACTCATAAACCCTTCTTCTGTCCATTAAAATGTATTGGGACTCAAGATCATTGACAAGGTAGGGTTTCCGAAGCTTCGAATAAGCAATAGCTTTTTTGAGGGGAAATCCTTCGGAATAAAAACTGACCAGTGCATCACAGATGGGCCATGACTCTATTGGTGAATCTAATATCATTTTCTCGTCAAATATTATTATCTTAATGTGCTGAAACTTGTTCA] [+] EMBL CD111360 [GTAGATATTATGATCTTCAGCATGCAAAGGTTTTTCTACGAATGGTTTGTGAAAAACCTCACCATTAATCTGAAATAAAAATGTATACTTTATCCAACAGGTACTTCAATTGAATCGTCAAGCTCAACAACTTTCACTGGGTTTTCCGATGTCCTATCAACAAATGCATATCTCGGAACTGGAACACCTTCTCTCGTCAAGCACTCATAAACCCTTCTTCTGTCCATTAAAATGTATTGGGACTCAAGATCATTGACAAGGTAGGGTTTCCGAAGCTTCGAATAAGCAATAGCTTTTTTGAGGGGAAATCCTTCGGAATAAAAACTGACCAGTGCATCACAGATGGGCCATGACTCTATTGGTGAATCTAATATCATTTTCTCGTCAAATATTATTATCTTAATGTGCTGAAACTTGTTCA] consensusID : consensus_7212#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence [AAGTGCTGAGTTTCTCTAAACGTCTAATCTCTCTACTAACTGCAAGTCTTATATTCCAGAACAAATATTCATACCCATACTACAATATTAAGGGGTACTATTCAATACTGTTTACCTGAAAATAAGACGTAGTGGAAATTAGTTAGCTAATAAAATCCACTTTCATCATTAGGCAAAATGACTTACTTCAATTGAATCGTCAAGCTCAACAACTTTCACTGGGTTTTCCGATGTCCTATCAACAAATGCATATCCCGGAACTGGAACACCTTCTCTCGTCAAGCACTCATAAACCCTTCTTCTGTCCATTAAAATGTATTGGGACTCAAGATCATTGACAAGGTAGGGTTTCCGAAGCTTCGAATAAGCAATAGCTTTTTTGAGGGGAAATCCTTCGGAATAAAAA] [-] EMBL CD197902 [AAGTGCTGAGTTTCTCTAAACGTCTAATCTCTCTACTAACTGCAAGTCTTATATTCCAGAACAAATATTCATACCCATACTACAATATTAAGGGGTACTATTCAATACTGTTTACCTGAAAATAAGACGTAGTGGAAATTAGTTAGCTAATAAAATCCACTTTCATCATTAGGCAAAATGACTTACTTCAATTGAATCGTCAAGCTCAACAACTTTCACTGGGTTTTCCGATGTCCTATCAACAAATGCATATCCCGGAACTGGAACACCTTCTCTCGTCAAGCACTCATAAACCCTTCTTCTGTCCATTAAAATGTATTGGGACTCAAGATCATTGACAAGGTAGGGTTTCCGAAGCTTCGAATAAGCAATAGCTTTTTTGAGGGGAAATCCTTCGGAATAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7212#0 ------------------------------------------------------------ consensus_7212#1 ------------------------------------------------------------ consensus_7212#2 AAGTGCTGAGTTTCTCTAAACGTCTAATCTCTCTACTAACTGCAAGTCTTATATTCCAGA 60 consensus_7212#0 --GGAAATAGATGTAGATATTATGATCTTCAG------CATGCAAAG--GTTTTTCTACG 50 consensus_7212#1 ------------GTAGATATTATGATCTTCAG------CATGCAAAG--GTTTTTCTACG 40 consensus_7212#2 ACAAATATTCATACCCATACTACAATATTAAGGGGTACTATTCAATACTGTTTACCTGAA 120 *** ** ** ** ** ** *** **** ** consensus_7212#0 AATGGTTTGTGAAAAACCTCACC--ATTAAT----------------------------- 79 consensus_7212#1 AATGGTTTGTGAAAAACCTCACC--ATTAATCTGAAATAAAAATGTATACTTTATCCAAC 98 consensus_7212#2 AATAAGACGTAGTGGAAATTAGTTAGCTAATAAAATCCACTTTCATCATTAGGCAAAATG 180 *** ** * * * **** consensus_7212#0 ------TTCAATTGAATCGTCAAGCTCAACAACTTTCACTGGGTTTTCCGATGTCCTATC 133 consensus_7212#1 AGGTACTTCAATTGAATCGTCAAGCTCAACAACTTTCACTGGGTTTTCCGATGTCCTATC 158 consensus_7212#2 ACTTACTTCAATTGAATCGTCAAGCTCAACAACTTTCACTGGGTTTTCCGATGTCCTATC 240 ****************************************************** consensus_7212#0 AACAAATGCATATCTCGGAACTGGAACACCTTCTCTCGTCAAGCACTCATAAACCCTTCT 193 consensus_7212#1 AACAAATGCATATCTCGGAACTGGAACACCTTCTCTCGTCAAGCACTCATAAACCCTTCT 218 consensus_7212#2 AACAAATGCATATCCCGGAACTGGAACACCTTCTCTCGTCAAGCACTCATAAACCCTTCT 300 ************** ********************************************* consensus_7212#0 TCTGTCCATTAAAATGTATTGGGACTCAAGATCATTGACAAGGTAGGGTTTCCGAAGCTT 253 consensus_7212#1 TCTGTCCATTAAAATGTATTGGGACTCAAGATCATTGACAAGGTAGGGTTTCCGAAGCTT 278 consensus_7212#2 TCTGTCCATTAAAATGTATTGGGACTCAAGATCATTGACAAGGTAGGGTTTCCGAAGCTT 360 ************************************************************ consensus_7212#0 CGAATAAGCAATAGCTTTTTTGAGGGGAAATCCTTCGGAATAAAAACTGACCAGTGCATC 313 consensus_7212#1 CGAATAAGCAATAGCTTTTTTGAGGGGAAATCCTTCGGAATAAAAACTGACCAGTGCATC 338 consensus_7212#2 CGAATAAGCAATAGCTTTTTTGAGGGGAAATCCTTCGGAATAAAAA-------------- 406 ********************************************** consensus_7212#0 ACAGATGGGCCATGACTCTATTGGTGAATCTAATATCATTTTCTCGTCAAATATTATTAT 373 consensus_7212#1 ACAGATGGGCCATGACTCTATTGGTGAATCTAATATCATTTTCTCGTCAAATATTATTAT 398 consensus_7212#2 ------------------------------------------------------------ consensus_7212#0 CTTAATGTGCTGAAACTTGTCCATTCTTCGCAAAATTTCCTTCATTGGTTTTGACATGGC 433 consensus_7212#1 CTTAATGTGCTGAAACTTGTTCA------------------------------------- 421 consensus_7212#2 ------------------------------------------------------------ consensus_7212#0 TTTCTTTGCCATTGCACAAACTCCTATCGTGACAACTACATCACTGTCGTCTGCCCTCTC 493 consensus_7212#1 ------------------------------------------------------------ consensus_7212#2 ------------------------------------------------------------ consensus_7212#0 ATTCATACCTTAGTCA 509 consensus_7212#1 ---------------- consensus_7212#2 ---------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||