These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7221#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 649 fasta sequence [CAGCACGGCACCCTCATATGTTCGCAGGAACACCAACTGCCACCCCTACACCAACTCCTGAACAAACCTCTCAGTTCCAGGGATGTAATAAAATCGCTAGTGATAGTGATAATTCTTTAAATCAAGCGCCTTGGTTTCAAGCTATGCTACCCAGAGAAATAGCATTTGAATTGCTCGCTAAAGAAGAGGTTGGCAGTTTTTTAGTTCGCAACAGTGCTACTCATCCTGGTTGTTGTGCTTTATCTGTTCGAGTGCCAAATAAGGATAATCCGATAGGAATAACCCATTACTTGATACAGAAAACGAATCGAGGCGTTCGATTAAAGGGTTTGGACAAGGAATGGCCATCCCTACAAGCTCTTGTTACCCATTTGACTGTCATTCCAGAGATGCTTCCATGCCCTCTCAAGCTTCCACAATATACTACTAATCCAATCTCTACACAGTCCGATCTGCAGTTGACAAATGGCCCATCAAACGAAATTCCCAAGCAACAGCGTAACTATAACATCAGATCATCACAAACAGAAGCGGGTGAAAATAATCGTGTCACTAATTCAGACTTATCTAGTCACCATCCCCAGCGTATACTTCATTCAGTCGCAGATCTTCCTTGTAGACCAGTCCTACCATCATGTGCTACCATTTC] [+] EMBL CD061020 [CAGCACGGCACCCTCATATGTTCGCAGGAACACCAACTGCCACCCCTACACCAACTCCTGAACAAACCTCTCAGTTCCAGGGATGTAATAAAATCGCTAGTGATAGTGATAATTCTTTAAATCAAGCGCCTTGGTTTCAAGCTATGCTACCCAGAGAAATAGCATTTGAATTGCTCGCTAAAGAAGAGGTTGGCAGTTTTTTAGTTCGCAACAGTGCTACTCATCCTGGTTGTTGTGCTTTATCTGTTCGAGTGCCAAATAAGGATAATCCGATAGGAATAACCCATTACTTGATACAGAAAACGAATCGAGGCGTTCGATTAAAGGGTTTGGACAAGGAATGGCCATCCCTACAAGCTCTTGTTACCCATTTGACTGTCATTCCAGAGATGCTTCCATGCCCTCTCAAGCTTCCACAATATACTACTAATCCAATCTCTACACAGTCCGATCTGCAGTTGACAAATGGCCCATCAAACGAAATTCCCAAGCAACAGCGTAACTATAACATCAGATCATCACAAACAGAAGCGGGTGAAAATAATCGTGTCACTAATTCAGACTTATCTAGTCACCATCCCCAGCGTATACTTCATTCAGTCGCAGATCTTCCTTGTAGACCAGTCCTACCATCATGTGCTACCATTTC] [+] EMBL CD060978 [gAGCTCGGCACCCTCATATGTTCGCAGGAACACCAACTGCCACCCCTACACCAACTCCTGAACAAACCTCTCAGTTCCAGGGATGTAATAAAATCGCTAGTGATAGTGATAATTCTTTAAATCAAGCGCCTTGGTTTCAAGCTATGCTACCCAGAGAAATAGCATTTGAATTGCTCGCTAAAGAAGAGGTTGGCAGTTTTTTAGTTCGCAACAGTGCTACTCATCCTGGTTGTTGTGCTTTATCTGTTCGAGTGCCAAATAAGGATAATCCGATAGGAATAACCCATTACTTGATACAGAAAACGAATCGAGGCGTTCGATTAAAGGGTTTGGACAAGGAATGGCCATCCCTACAAGCTCTTGTTACCCATTTGACTGTCATTCCAGAGATGCTTCCATGCCCTCTCAAGCTTCCACAATATACTACTAATCCAATCTCTACACAGTCCGATCTGCAGTTGACAAATGGCCCATCAAACGAAATTCCCAAGCAACAGCGTAACTATAACATCAGATCATCACAAACAGAAGCGGGTGAAAATAATCGTGTCACTAATTCAGACTTATCTAGTCACCATCCCCAGCGTATACTTCATTCAGTCGCAGATCTTCCTTGTAGACCAGTCCTACCATCATGTGCTACCATTTC] consensusID : consensus_7221#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 585 fasta sequence [CGACGTCATCACTTTCAACAGATACTCCAACACCAACTGCCACCCCTACACCAACTCCTGAACAAACCTCTCAGTTCCAGGGATGTAATAAAATCGCTAGTGATAGTGATAATTCTTTAAATCAAGCGCCTTGGTTTCAAGCTATGCTACCCAGAGAAATAGCATTTGAATTGCTCGCTAAAGAAGAGGTTGGCAGTTTTTTAGTTCGCAACAGTGCTACTCATCCTGGTTGTTGTGCTTTATCTGTTCGAGTGCCAAATAAGGATAATCCGATAGGAATAACCCATTACTTGATACAGAAAACGAATCGAGGCGTTCGATTAAAGGGTTTGGACAAGGAATGGCCATCCCTACAAGCTCTTGTTACCCATTTGACTGTCATTCCAGAGATGCTTCCATGCCCTCTCAAGCTTCCACAATATACTACTAATCCAATCTTTACACAGTCCGATCTGCAGTTGACAAATGGCCCATCAAACGAAATTCCCAAGCAACAGCGTAACTATAACATCAGATCATCACAAACAGAAGCGGGTGAAAATAATCGTGTTACTAATTCAGACTTATCTAGTCACCATCCCCAGC] [+] EMBL CD181953 [CGACGTCATCACTTTCAACAGATACTCCAACACCAACTGCCACCCCTACACCAACTCCTGAACAAACCTCTCAGTTCCAGGGATGTAATAAAATCGCTAGTGATAGTGATAATTCTTTAAATCAAGCGCCTTGGTTTCAAGCTATGCTACCCAGAGAAATAGCATTTGAATTGCTCGCTAAA ] [-] EMBL CD124935 [ GACGTCATCACTTTCAACAGATACTCCAACACCAACTGCCACCCCTACACCAACTCCTGAACAAACCTCTCAGTTCCAGGGATGTAATANAATCGCTAGTGATAGTGATAATTCTTTAAATCAAGCGCCTTGGTTTCAAGCTATGCTACCCAGAGAAATAGCATTTGAATTGCTCGCTAAAGAAGAGGTTGGCAGTTTTTTAGTTCGCAACAGTGCTACTCATCCTGGTTGTTGTGCTTTATCTGTTCGAGTGCCAAATAAGGATAATCCGATAGGAATAACCCATTACTTGATACAGAAAACGAATCGAGGCGTTCGATTAAAGGGTTTGGACAAGGAATGGCCATCCCTACAAGCTCTTGTTACCCATTTGACTGTCATTCCAGAGATGCTTCCATGCCCTCTCAAGCTTCCACAATATACTACTAATCCAATCTTTACACAGTCCGATCTGCAGTTGACAAATGGCCCATCAAACGAAATTCCCAAGCAACAGCGTAACTATAACATCAGATCATCACAAACAGAAGCGGGTGAAAATAATCGTGTTACTAATTCAGACTTATCTAGTCACCATCCCCAGC] [+] EMBL CD139059 [ AACTCCTGAACAAACCTCTCAGTTCCAGGGATGTAATAAAATCGCTAGTGATAGTGATAATTCTTTAAATCAAGCGCCTTGGTTTCAAGCTATGCTACCCAGAGAAATAGCACTTGAATTGCTCGCTAAAGAAGAGGTTGGCAGTTTTTTAGTTCGCAACAGTGCTACTCATCCTGGTTGTTGTGCTTTATCTGTTCGAGTGCCAAATAAGGATAATCCGATAGGAATAACCCATTACTTGATACAGAAAACGAATCGAGGCGTTCGATTAAAGGGTTTGGACAAGGAATGGCCATCCCTACAAGCTCTTGTTACCCATTTGACTGTCATTCCAGAGATGCTTCCATGCCCTCTCAAGCTTCCACAATATACTACTAATCCAATCTTTACACAGTCCGATCTGCAGTTGACAAATGGACCATCAAACG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7221#0 CAGCA-CGGCACCCTCATATGTTCGCAGGAACACCAACTGCCACCCCTACACCAACTCCT 59 consensus_7221#1 CGACGTCATCACTTTCA-ACAGATACTCCAACACCAACTGCCACCCCTACACCAACTCCT 59 * * * *** *** * * ******************************* consensus_7221#0 GAACAAACCTCTCAGTTCCAGGGATGTAATAAAATCGCTAGTGATAGTGATAATTCTTTA 119 consensus_7221#1 GAACAAACCTCTCAGTTCCAGGGATGTAATAAAATCGCTAGTGATAGTGATAATTCTTTA 119 ************************************************************ consensus_7221#0 AATCAAGCGCCTTGGTTTCAAGCTATGCTACCCAGAGAAATAGCATTTGAATTGCTCGCT 179 consensus_7221#1 AATCAAGCGCCTTGGTTTCAAGCTATGCTACCCAGAGAAATAGCATTTGAATTGCTCGCT 179 ************************************************************ consensus_7221#0 AAAGAAGAGGTTGGCAGTTTTTTAGTTCGCAACAGTGCTACTCATCCTGGTTGTTGTGCT 239 consensus_7221#1 AAAGAAGAGGTTGGCAGTTTTTTAGTTCGCAACAGTGCTACTCATCCTGGTTGTTGTGCT 239 ************************************************************ consensus_7221#0 TTATCTGTTCGAGTGCCAAATAAGGATAATCCGATAGGAATAACCCATTACTTGATACAG 299 consensus_7221#1 TTATCTGTTCGAGTGCCAAATAAGGATAATCCGATAGGAATAACCCATTACTTGATACAG 299 ************************************************************ consensus_7221#0 AAAACGAATCGAGGCGTTCGATTAAAGGGTTTGGACAAGGAATGGCCATCCCTACAAGCT 359 consensus_7221#1 AAAACGAATCGAGGCGTTCGATTAAAGGGTTTGGACAAGGAATGGCCATCCCTACAAGCT 359 ************************************************************ consensus_7221#0 CTTGTTACCCATTTGACTGTCATTCCAGAGATGCTTCCATGCCCTCTCAAGCTTCCACAA 419 consensus_7221#1 CTTGTTACCCATTTGACTGTCATTCCAGAGATGCTTCCATGCCCTCTCAAGCTTCCACAA 419 ************************************************************ consensus_7221#0 TATACTACTAATCCAATCTCTACACAGTCCGATCTGCAGTTGACAAATGGCCCATCAAAC 479 consensus_7221#1 TATACTACTAATCCAATCTTTACACAGTCCGATCTGCAGTTGACAAATGGCCCATCAAAC 479 ******************* **************************************** consensus_7221#0 GAAATTCCCAAGCAACAGCGTAACTATAACATCAGATCATCACAAACAGAAGCGGGTGAA 539 consensus_7221#1 GAAATTCCCAAGCAACAGCGTAACTATAACATCAGATCATCACAAACAGAAGCGGGTGAA 539 ************************************************************ consensus_7221#0 AATAATCGTGTCACTAATTCAGACTTATCTAGTCACCATCCCCAGCGTATACTTCATTCA 599 consensus_7221#1 AATAATCGTGTTACTAATTCAGACTTATCTAGTCACCATCCCCAGC-------------- 585 *********** ********************************** consensus_7221#0 GTCGCAGATCTTCCTTGTAGACCAGTCCTACCATCATGTGCTACCATTTC 649 consensus_7221#1 -------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||