These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7244#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 724 fasta sequence [GTTTATTGATAAGTTAGAAACCCTTA-ATC-AAGCAACAATTCCAGAAATACCTGTGTACAAACCTACGGTTGCAGAATTCGAGGACTTCAGTAAATGTATTTCCATGATAGAGTCCCTCGGTGCTCATCATGTAGGACTTTGTAAAGTAATACCACCGTCAAATTGGGTTGGGCGTCGCAAAGGTTATGATGATATTGATGAGCGTTTAGTGGAAAAACCTATTTGTCAAAGCACATATGGTGGACGTGGTATATATTTTCAGGTCTGTCTTATTACTTTCCTCAACAATGAGTGTAGGATATTTCGCCCAGAAAAAGTCTCAAATTCAGTGACTTTAAAAATATTGCGTTATCAAATGTATACTGCACCCCCAAGTACAGAGACTACGATCACCTTGAAAGAAAATACTGGTCATCGATCGGCACTAGTCGTCCACTGTATGGGGCTAACGTCAATGGAACTTTGATGGATAGTGACCAGCATATTTGGAACATCTCANAACTAGACTCAGTACTAAGTCGGGTTTTCGAAGAAGAGGGTGTACAGATACCAGGTGTGAATACTCCATATTTGTATTATGGAATGTGGCGATCTACGTTTCCGTGGCATGTTGAAGATGTAGATTTGTACTCTATAAACTACCTGCATTACGGTTTTCCAAAGTGCTGGTACGTCATACCTCCAGCTTTTGCGCGTAAATTTGAATCCTTTGTTTCCGAATATT] [-] EMBL CD189812 [GTTTATTGATAAGTTAGAAACCCTTA ATC AAGCAACAATTCCAGAAATACCTGTGTACAAACCTACGGTTGCAGAATTCGAGGACTTCAGTAAATGTATTTCCATGATAGAGTCCCTCGGTGCTCATCATGTAGGACTTTGTAAAGTAATACCACCGTCAAATTGGGTTGGGCGTCGCAAAGGTTATGATGATATTGATGAGCGTTTAGTGGAAAAACCTATTTGTCAAAGCACATATGGTGGACGTGGTATATATTTTCAGGTCTGTCTTATTACTTTCCTCAACAATGAGTGTAGGATATTTCGCCCAGAAAAAGTCTCAAATTCAGTGACTTTAAAAATATTGCGTTATCAAATGTAT ] [+] EMBL CD158375 [ TTTATTGATAAGTTAGAAACCCTTA ATC AAGCAACAATTCCAGAAATACCTGTGTACAAACCTACGGTTGCAGAATTCGAGGACTTCAGTAAATGTATTTCCATGATAGAGTCCCTCGGTGCTCATCATGTAGGACTTTGTAAAGTAATACCACCGTCAAATTGGGTTGGGCGTCGCAAAGGTTATGATGATATTGATGAGCGTTTAGTGGAAAAACCTATTTGTCAAAGCACATATGGTGGACGTGGTATATATTTTCAGGTCTGTCTTATTACTTTCCTCAACAATGAGTGTAGGATATTTCGCCCAGAAAAAGTCTCAAATTCAGTGACTTTAAAAATATTGCGTTATCAAATGTATACTGCACCCCCAAGTACAGAGACTACGATCACCTTGAAAGAAAATACTGGTCATCGATCGGCACTAGTCGTCCACTGTATGGGGCTAACGTCAATGGAACTTTGATGGATAGTGACCAGCATATTTGGAACATCTCANAACTAGACTCAGTACTAAGTCGGGTTTTCGAAGAAGAG ] [-] EMBL CD185878 [ ctTTAGATCTATTCATCAATTACAGAAATACCTGTGTACAAACCTACGGTTGCAGAATTCGAGGACTTCAGTAAATGTATTTCCATGATAGAGTCCCTCGGTGCTCATCATGTAGGACTTTGTAAAGTAATACCACCGTCAAATTGGGTTGGGCGTCGCAAAGGTTATGATGATATTGATGAGCGTTTAGTGGAAAAACCTATTTGTCAAAGCACATATGGTGGACGTGGTATATATTTTCAGGTCTGTCTTATTACTTTCCTCAACAATGAGTGTAG ] [+] EMBL CD155362 [ TATGGTGGACGTGGTATATATTTTCAGGTCTGTCTTATTACTTTCCTCAACAATGAGTGTAGGATATTTCGCCCAGAAAAAGTCTCAAATTCAGTGACTTTAAAAATATTGCGTTATCAAATGTATACTGCACCCCCAAGTACAGAGACTACGATCACCTTGAAAGAAAATACTGGTCATCGATCGGCACTAGTCGTCCACTGTATGGGGCTAACGTCAATGGAACTTTGATGGATAGTGACCAGCATATTTGGAACATCTCAAAACTAGACTCAGTACTAAGTCGGGTTTTTGAAGAAGAGGGTGTACAGATACCAGGTGTGAATACTCCATATTTGTATTATGGAATGTGGCGATCTACGTTTCCGTGGCATGTTGAAGATGTAGATTTGTACTCTATAAACTACCTGCATTACGGTTTTCCAAAGTGCTGGTACGTCATACCTCCAGCTTTTGCGCGTAAATTTGAATCCTTTGTTTCCGAATATT] consensusID : consensus_7244#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence [GTTTATTGATAAGTTAGAAAAATACCTGTGTACAAACCTACGGTTGCAGAATTCGAGGACTTCAGTAAATGTATTTCCATGATAGAGTCCCTCGGTGCTCATCATGTAGGACTTTGTAAAGTAATACCACCGTCAAATTGGGTTGGGCGTCGCAAAGGTTATGATGATATTGATGAGCGTTTAGTGGAAAAACCTATTTGTCAAAGCACATATGGTGGACGTGGTATATATTTTCAGGATATTTCGCCCAGAAAAAGTCTCAAATTCAGTGACTTTAAAAATATTGCGTTATCAAATGTAT] [-] EMBL CD183504 [GTTTATTGATAAGTTAGAAAAATACCTGTGTACAAACCTACGGTTGCAGAATTCGAGGACTTCAGTAAATGTATTTCCATGATAGAGTCCCTCGGTGCTCATCATGTAGGACTTTGTAAAGTAATACCACCGTCAAATTGGGTTGGGCGTCGCAAAGGTTATGATGATATTGATGAGCGTTTAGTGGAAAAACCTATTTGTCAAAGCACATATGGTGGACGTGGTATATATTTTCAGGATATTTCGCCCAGAAAAAGTCTCAAATTCAGTGACTTTAAAAATATTGCGTTATCAAATGTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7244#0 GTTTATTGATAAGTTAGAAACCCTTAATCAAGCAACAA-TTCCAGAAATACCTGTGTACA 59 consensus_7244#1 --------------------------GTTTATTGATAAGTTAGAAAAATACCTGTGTACA 34 * * * ** ** * *************** consensus_7244#0 AACCTACGGTTGCAGAATTCGAGGACTTCAGTAAATGTATTTCCATGATAGAGTCCCTCG 119 consensus_7244#1 AACCTACGGTTGCAGAATTCGAGGACTTCAGTAAATGTATTTCCATGATAGAGTCCCTCG 94 ************************************************************ consensus_7244#0 GTGCTCATCATGTAGGACTTTGTAAAGTAATACCACCGTCAAATTGGGTTGGGCGTCGCA 179 consensus_7244#1 GTGCTCATCATGTAGGACTTTGTAAAGTAATACCACCGTCAAATTGGGTTGGGCGTCGCA 154 ************************************************************ consensus_7244#0 AAGGTTATGATGATATTGATGAGCGTTTAGTGGAAAAACCTATTTGTCAAAGCACATATG 239 consensus_7244#1 AAGGTTATGATGATATTGATGAGCGTTTAGTGGAAAAACCTATTTGTCAAAGCACATATG 214 ************************************************************ consensus_7244#0 GTGGACGTGGTATATATTTTCAGGTCTGTCTTATTACTTTCCTCAACAATGAGTGTAGGA 299 consensus_7244#1 GTGGACGTGGTATATATTTTCAGG-----------------------------------A 239 ************************ * consensus_7244#0 TATTTCGCCCAGAAAAAGTCTCAAATTCAGTGACTTTAAAAATATTGCGTTATCAAATGT 359 consensus_7244#1 TATTTCGCCCAGAAAAAGTCTCAAATTCAGTGACTTTAAAAATATTGCGTTATCAAATGT 299 ************************************************************ consensus_7244#0 ATACTGCACCCCCAAGTACAGAGACTACGATCACCTTGAAAGAAAATACTGGTCATCGAT 419 consensus_7244#1 AT---------------------------------------------------------- 301 ** consensus_7244#0 CGGCACTAGTCGTCCACTGTATGGGGCTAACGTCAATGGAACTTTGATGGATAGTGACCA 479 consensus_7244#1 ------------------------------------------------------------ consensus_7244#0 GCATATTTGGAACATCTCANAACTAGACTCAGTACTAAGTCGGGTTTTCGAAGAAGAGGG 539 consensus_7244#1 ------------------------------------------------------------ consensus_7244#0 TGTACAGATACCAGGTGTGAATACTCCATATTTGTATTATGGAATGTGGCGATCTACGTT 599 consensus_7244#1 ------------------------------------------------------------ consensus_7244#0 TCCGTGGCATGTTGAAGATGTAGATTTGTACTCTATAAACTACCTGCATTACGGTTTTCC 659 consensus_7244#1 ------------------------------------------------------------ consensus_7244#0 AAAGTGCTGGTACGTCATACCTCCAGCTTTTGCGCGTAAATTTGAATCCTTTGTTTCCGA 719 consensus_7244#1 ------------------------------------------------------------ consensus_7244#0 ATATT 724 consensus_7244#1 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||