These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7254#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 638 fasta sequence [CACCTGGATGATGAAAGGATATTTACTGCAGCGAACTTAGCAGATGCCGAGAGGATTCGTGCTTCACAATCTGTTAATCTGTTCACATTTGTACTCTTTCTTTACATACAACAAATAAACAAGATATCACTGCGAGCGTCAGCAGTGCCAGCCAGTGCTGAGTGGCCTGGTAGTTACAGTCGTTCATCCGAGTTGGATTCAGGTCGTTCAACTCCTATCAGACTATGTCGCAATCTAGATGAGCAATATCATTTCCAGTTTATCAGTGAAAATTTGAATGAAATGCTTGATCTTCTTGTTGAACCCGATAAACAAAGTGGAAATAGTATGGATGCAACATTATCTGAAGGTGCTGTCGAAGCTTTGGATCTTGTTTTGGAAGGATCAGCTGATGAAGGAAGGACACTTAATTCATTTTCAGAACTTGCCCATATACCAACAATTCTTCCAGCAACTGGTTATTCCAAGGTTACACATGCTTTCCATTTGCGTGGCCTTCTTTCTTGGATTCGTTCATGGTTAACACANAACCCGTTTTCGGTTGAGAACTGTATTCTAAATGGTCGACGTTTACAGTGGCGTCTCCCTCATCAAGTTGTCTTGGACAATGAATCTGGTTTAAACAATACTCAGNCACA] [+] EMBL CD093372 [CACCTGGATGATGAAAGGATATTTACTGCAGCGAACTTAGCAGATGCCGAGAGGATTCGTGCTTCACAATCTGTTAATCTGTTCACATTTGTACTCTTTCTTTACATACAACAAATAAACAAGATATCACTGCGAGCGTCAGCAGTGCCAGCCAGTGCTGAGTGGCCTGGTAGTTACAGTCGTTCA ] [+] EMBL CD192488 [ ACAAGATATCACTGCGAGCGTCAGCAGTGTCAGCCAGTGCTGAGTGGCCTGGTAGTTACAGTCGTTCATCCGAGTTGGATTCAGGTCGTTCAACTCCTATCAGACTATGTCGCAATCTAGATGAGCAATATCATTTCCAGTTTATCAGTGAAAATTTGAATGAAATGCTTGATCTTCTTGTTGAACCCGATAAACAAAGTGGAAATAGTATGGATGCAACATTATCTGAAGGTGCTGTCGAAGCTTTGGATCTTGTTTTGGAAGGATCAGCTGATGAAGGAAGGACACTTAATTCATTTTCAGAACTTGCCCATATACCAACAATTCTTCCAGCAACTGGTTATTCCAAGGTTACACATGCTTTCCATTTGCGTGGCCTTCTTTCTTGGATTCGTTCATGGTTAACACANAACCCGTTTTCGGTTGAGAACTGTATTCTAAATGGTCGACGTTTACAGTGGCGTCTCCCTCATCAAGTTGTCTTGGACAATGAATCTGGTTTAAACAATACTCAGNCACA] [-] EMBL CD068093 [ TTCATCCGAGTTGGATTCAGGTCGTTCAACTCCTATCAGACTATGTCGCAATCTAGATGAGCAATATCATTTCCAGTTTATCAGTGAAAATTTGAATGAAATGCTTGATCTTCTTGTTGAACCCGATAACCAAAGTGGAAATAGTATGGATGCAACATTATCTGAAGGTGCTGTCGAAGCTTTGGATCTTGTTTTGGAAGGATCAGCTGATGAAGGAAGGACACTTAATTCATTTTCAGAACTTGCCCATATACCAACAATTCTTCCAGCAACTGGTTATTCCAAGGTTACACATGCTTTCCATTTGCGTGGCCTTCTTTCTTGGATTCGTTCATGGTTAACACA AACCCGTTTTCGGTTGAAAACTGTATTCTAAATGGTCGACGTTTACAGTGGCGTCTCCCTCATCAAGTTGTCTTGGACAATG ATCTGG ] consensusID : consensus_7254#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 452 fasta sequence [AGATGAGCAATATCATTTCCAGTTAATCAGTGAAAATTTGAATGAGATGCTTGATCTTCTTGTTGAACCCGATAACCAAAGTGGAAATAGTATGGATGCAACATTATCTGAAGGTGCTGTCGAAGCTTTGGATCTTGTTTTGGAAGGATCAGCTGATGAAGGAAGGTGCAACTACTTTTACATACTTTTAACCTTATTTTATTTCAGGACACTTAATTCATTTTCAGAACTTGCCCATATACCAACAATTCTTCCAGCAACTGGTTATTCCAAGGTTACGCATGCTTTCCATTTGCGTGGCCTTCTTTCTTGGACTCGTTCATGGTTAACACAAAACCCGTTTTCGGTTGAAAACTGTATTCTAAATGGTCGACGTTTACAGTGGCGTCTCCCTCATCAAGTTGTCTTGGACAATGAATCTGGTTTAAACAATACTCAGCACAGCCTCTGGA] [-] EMBL CD184843 [AGATGAGCAATATCATTTCCAGTTAATCAGTGAAAATTTGAATGAGATGCTTGATCTTCTTGTTGAACCCGATAACCAAAGTGGAAATAGTATGGATGCAACATTATCTGAAGGTGCTGTCGAAGCTTTGGATCTTGTTTTGGAAGGATCAGCTGATGAAGGAAGGTGCAACTACTTTTACATACTTTTAACCTTATTTTATTTCAGGACACTTAATTCATTTTCAGAACTTGCCCATATACCAACAATTCTTCCAGCAACTGGTTATTCCAAGGTTACGCATGCTTTCCATTTGCGTGGCCTTCTTTCTTGGACTCGTTCATGGTTAACACAAAACCCGTTTTCGGTTGAAAACTGTATTCTAAATGGTCGACGTTTACAGTGGCGTCTCCCTCATCAAGTTGTCTTGGACAATGAATCTGGTT ] [-] EMBL CD126654 [ ATACTTTTAACCTTATTTTATTTCAGGACACTTAATTCATTTTCAGAACTTGCCCATATACCAACAATTCTTCCAGCAACTGGTTATTCCAAGGTTACACATGCTTTCCATTTGCGTGGCCTTCTTTCTTGGATTCGTTCATGGTTAACACAAAACCCGTTTTCGGTTGAAAACTGTATTCTAAATGGTCGACGTTTACAGTGGCGTCTCCCTCATC AGTTGTCTTGGAC ATGAATCTGGTTTAAACAATACTCAGCACAGCCTCTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7254#0 CACCTGGATGATGAAAGGATATTTACTGCAGCGAACTTAGCAGATGCCGAGAGGATTCGT 60 consensus_7254#1 ------------------------------------------------------------ consensus_7254#0 GCTTCACAATCTGTTAATCTGTTCACATTTGTACTCTTTCTTTACATACAACAAATAAAC 120 consensus_7254#1 ------------------------------------------------------------ consensus_7254#0 AAGATATCACTGCGAGCGTCAGCAGTGCCAGCCAGTGCTGAGTGGCCTGGTAGTTACAGT 180 consensus_7254#1 ------------------------------------------------------------ consensus_7254#0 CGTTCATCCGAGTTGGATTCAGGTCGTTCAACTCCTATCAGACTATGTCGCAATCTAGAT 240 consensus_7254#1 --------------------------------------------------------AGAT 4 **** consensus_7254#0 GAGCAATATCATTTCCAGTTTATCAGTGAAAATTTGAATGAAATGCTTGATCTTCTTGTT 300 consensus_7254#1 GAGCAATATCATTTCCAGTTAATCAGTGAAAATTTGAATGAGATGCTTGATCTTCTTGTT 64 ******************** ******************** ****************** consensus_7254#0 GAACCCGATAAACAAAGTGGAAATAGTATGGATGCAACATTATCTGAAGGTGCTGTCGAA 360 consensus_7254#1 GAACCCGATAACCAAAGTGGAAATAGTATGGATGCAACATTATCTGAAGGTGCTGTCGAA 124 *********** ************************************************ consensus_7254#0 GCTTTGGATCTTGTTTTGGAAGGATCAGCTGATGAAGGAAGG------------------ 402 consensus_7254#1 GCTTTGGATCTTGTTTTGGAAGGATCAGCTGATGAAGGAAGGTGCAACTACTTTTACATA 184 ****************************************** consensus_7254#0 ------------------------ACACTTAATTCATTTTCAGAACTTGCCCATATACCA 438 consensus_7254#1 CTTTTAACCTTATTTTATTTCAGGACACTTAATTCATTTTCAGAACTTGCCCATATACCA 244 ************************************ consensus_7254#0 ACAATTCTTCCAGCAACTGGTTATTCCAAGGTTACACATGCTTTCCATTTGCGTGGCCTT 498 consensus_7254#1 ACAATTCTTCCAGCAACTGGTTATTCCAAGGTTACGCATGCTTTCCATTTGCGTGGCCTT 304 *********************************** ************************ consensus_7254#0 CTTTCTTGGATTCGTTCATGGTTAACACANAACCCGTTTTCGGTTGAGAACTGTATTCTA 558 consensus_7254#1 CTTTCTTGGACTCGTTCATGGTTAACACAAAACCCGTTTTCGGTTGAAAACTGTATTCTA 364 ********** ****************** ***************** ************ consensus_7254#0 AATGGTCGACGTTTACAGTGGCGTCTCCCTCATCAAGTTGTCTTGGACAATGAATCTGGT 618 consensus_7254#1 AATGGTCGACGTTTACAGTGGCGTCTCCCTCATCAAGTTGTCTTGGACAATGAATCTGGT 424 ************************************************************ consensus_7254#0 TTAAACAATACTCAGNCACA--------- 638 consensus_7254#1 TTAAACAATACTCAGC-ACAGCCTCTGGA 452 *************** *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||