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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7259#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 948 fasta sequence
[GATAACACACACTCCTAAATACCTAGTTTTGTACATACAAAGAAGTGATTGGTTAAACATAGCTAGCTTATCCACTGAATCTAATAATATTCGCCAGTTTGGTGGAAATCCTTTTTCAACTACCAGAATTGCTACAAAGCGTTCTGAACATGTACATATTCCGGAGTTTTTAGATATGGCGCCTTATTTGTTATCATGTAAAATTTCAAAGACTGAGGCTTTATCTCAGGCTGTAAATCCATATAATGACAAAAATTCTGAAGGTTTACTTTCCGATACTTCAGAATTATTAGAAAGAGATTGTCCGAAACCATACGTACTCCGTTCAGTTATTGTTCATGAAGGAGCATTTCATCAGTGTGGACATTATATAACGTATCGTAAATGGCACACA-CCTATGTTGCATGTGCAAAAAGTGTCGTATTGGCTAGTTCATATTTTGTCAAGTTTGTGTCAATACGTTTCAAACTATTTTCAAGGAATATCAAATACACCTGAAGCTTATAATTCGCCATGGATACTGACTTCCGATGCTCATGTAATACGTGTGCCGTTCAAACACGTGGAATCAAGTCCTGCTTATTTGTTATTTTACGAACGTTTACGTGGATGGGATGATCAGCGATTTGGAATAAAATCAACGTTTATTCCAAACGGCATCAGCCATCGCGCACAGCATAGCAATCATACGCTATCACCAGTTGAAGAGACTGATACGGGTCACTCGGAAATATATAGCGAAGATGAGTGCGATTCAGATGCTTCGACTGAC-AAACAATGTGTTTTTAGAAACTT-ATCAAAAGCAGACATCATTAGATCTTATGCATTATATACTTCAGCATCTCAGATGTATGATAAATCATGTGATGTATTCTACTTNCCAAGGTGTTTTCTTTTCTACCTATTTTACGGGTACCGTGGGATAATTTTTGAGAACGGATTTCCGGA]
[+] EMBL CD080649 [GATAACACACACTCCTAAATACCTAGTTTTGTACATACAAAGAAGTGATTGGTTAAACATAGCTAGCTTATCCACTGAATCTAATAATATTCGCCAGTTTGGTGGAAATCCTTTTTCAACTACCAGAATTGCTACAAAGCGTTCTGAACATGTACATATTCCGGAGTTTTTAGATATGGCGCCTTATTTGTTATCATGTAAAATTTCAAAGACTGAGGCTTTATCTCAGGCTGTAAATCCATATAATGACAAAAATTCTGAAGGTTTACTTTCCGATACTTCAGAATTATTAGAAAGAGATTGTCCGAAACCATACGTACTCCGTTCAGTTATTGTTCATGAAGGAGCATTTCATCAGTGTGGACATTATATAACGTATCGTAAATGGCACACA CCTATGTTGCATGTGCAAAAAGTGTCGTATTGGCTAGTTCATATTTTGTCAAGTTTGTGTCAATACGTTTCAAACTATTTTCAAGGAATATCAAATACACCTGAAGCTTATAATTCGCCATGGATACTGACTTCCGATGCTCATGTAATACGTGTGCCGTTCAAACACGTGGAATCAAGTCCTGCTTATTTGTTATTTTACGAACGTTTACGTGGATGGGATGATCAGCGATTTGGAAT AAATCAACGTTTATTCCAAACGGCATCAGCCATCGCGCACAGCATAGCAATCATACGCTATCACCAGTTGAAGAGACTGATACGGGTCACTCGG AATATATAGCGAAGATGAGTGCGATTCAGATGCTTCGACTGACNNAAC ATGTTGTTTTAGAAACTTNATC AAAGCAGACATCATTAGATCTTATGCATTATATACTTCAGCATCTCAGATGTATGATAAATCATGTGATGTATTCTACTTNCCAAGGTGTTTTCTTTTCTACCTATTTTACGGGTACCGTGGGATAATTTTTGAGAACGGATTTCCGG ]
[-] EMBL CD074563 [ GGTTTACTTTCCGATACTTCAGAATTATTAGAAAGAGATTGTCCGAAACCATACGTACTCCGTTCAGTTATTGTTCATGAAGGAGCATTTCATCAGTGTGGACATTATATAACGTATCGTAAATGGCACACA CCTATGTTGCATGTGCAAAAAGTGTCGTATTGGCTAGTTCATATTTTGTCAAGTTTGTGTCAATACGTTTCAAACTATTTTCAAGGAATATCAAATACACCTGAAGCTTATAATTCGCCATGGATACTGACTTCCGATGCTCATGTAATACGTGTGCCGTTCAAACACGTGGAATCAAGTCCTGCTTATTTGTTATTTTACGAACGTTTACGTGGATGGGATGATCAGCGATTTGGAATAAAATCAACGTTTATTCCAAACGGCATCAGCCATCGCGCACAGCATAGCAATCATACGCTATCACCAGTTGAAGAGACTGATACGGGTCACTCGGAAATATATAGCGAAGATGAGTGCGATTCAGATGCTTCGACTGAC AAACAATGTGTTTTTAGAAACTT ATCAAAAGCAGACATCATTAGATCTTATGCATTATATACTTCAGCATCTCAGATGTATGATAAATCATGTGATGTATTCTACTT CCAAAGTGTTTTCTTTCCTACCTATTTTACGGTTA CGTGGAGTAGTTTTTGAAAAACGATATCAGGA]
[-] EMBL CD076564 [ GTATCGTAAATGGCACACACCCTATGTTGCATGTGCAAAAAGTGTCGTATTGGCTAGTTCATATTTTGTCAAGTTTGTGTCAATACGTTTCAAACTATTTTCAAGGAATATCAAATACCCCTGAAGCTTATAATTCGCCATGGATACTGACTTCCGATGCTCATGTAATACGTGTGCCGTTCAAACACGTGGAATCAAGTCCTGCTTATTTGTTATTTTACGAACGTTTACGTGGATGGGATGATCAGCGATTTGGAATAAAATCAACGTTTATTCCAAACGGCATCAGCCATCGCGCACAGCATAGCAATCATACGCTATCACCAGTTGAAGAGACTGATACGGGTCACTCGGAAATATATAGCGAAGATGAGTGCGATTCAGATGCTTCGACTGAC AAACAATGTGTTTTTAGAAACTT ATCAAAAGCAGACATCATTAGATCTTATGCATTATATACTTCAGCATCTCAGATGTATGATAAATCATGTGATGTAT ]
consensusID : consensus_7259#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence
[AAGATTACAAGGTTAGGACTTGGCAATTGTCCAAGTTCCTGAGCACTGTTGACAACGAAGAAAAGTGACGTATTATTATTATTCTATATGTTGCCATTTATACTATTTGTTTTGATAAGTTGTATTTCTTCAGATAACGTGAATAAATCATCAAAAGTTGTACTTACTCCTTAGGCCAACTCACAAGTCAATAGTTCGATTTATTGGATTATAGTTAATATATCTATGTTTTCTCACTGATTTTTAGCAAACTATATTATCCTTTACTACCACTTTCGCTCTATATTATAGTTGTCCGAAACCATACGTACTCCGTTCAGTTATTGTTCATGAAGGAGCATTTCATCAGTGTGGACATTATATAACGTATCGTAAATGGCACACACCTATGTTGCATGTGCAAAAAGTGTCGTATTGGCTAGTTCATATTTTGTCAAGTTTGTGTCAATACGTTTCAAACTATTTTCAAGGAATATCAAATACACCTGAAGCTTATAATTCGCCATGGATACTGACTTCCGATGCTCATGNTATACGTGTGCCGTTCAAACACGTGGAATCAAGTCCTGCTTATTTGTTATTTTACGAACGTTTACGTGGATGGGATGATCAG]
[+] EMBL CD082981 [AAGATTACAAGGTTAGGACTTGGCAATTGTCCAAGTTCCTGAGCACTGTTGACAACGAAGAAAAGTGACGTATTATTATTATTCTATATGTTGCCATTTATACTATTTGTTTTGATAAGTTGTATTTCTTCAGATAACGTGAATAAATCATCAAAAGTTGTACTTACTCCTTAGGCCAACTCACAAGTCAATAGTTCGATTTATTGGATTATAGTTAATATATCTATGTTTTCTCACTGATTTTTAGCAAACTATATTATCCTTTACTACCACTTTCGCTCTATATTATAGTTGTCCGAAACCATACGTACTCCGTTCAGTTATTGTTCATGAAGGAGCATTTCATCAGTGTGGACATTATATAACGTATCGTAAATGGCACACACCTATGTTGCATGTGCAAAAAGTGTCGTATTGGCTAGTTCATATTTTGTCAAGTTTGTGTCAATACGTTTCAAACTATTTTCAAGGAATATCAAATACACCTGAAGCTTATAATTCGCCATGGATACTGACTTCCGATGCTCATGNTATACGTGTGCCGTTCAAACACGTGGAATCAAGTCCTGCTTATTTGTTATTTTACGAACGTTTACGTGGATGGGATGATCAG]
consensusID : consensus_7259#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence
[CAGAATTGCTACAAAGCGTTCTGAACATGTACATATTCCGGAGTTTTTAGATATGGCGCCTTATTTGCTATCATGTAAAATTTCAAAGACTGAGGCTTTATCTCAGGCTGTAAATCCATATAATGACAAAAATTCTGAAGGTTTACTTTCCGATACTTCAGAATTATTAGAAAGAGAGTGGGTTTCCAGCGAATTATTTGTCTTGTCATTTATTTTTGAAGTAGAATATATGATTTTCCCCCCTTTTCAACTTATCAGAAATGTTAAATTTGTCATTTGTTCTGACAATACAAAGTATCAATTCATTTGTTTAGTAGTTCAAGGAGAGTTATAATTCACAACTTATGAGATATGAATGACAGCTCTTGAGTGACAGAATGGAGTGCAGTCCAGATAATTTATTGTATGGAACTTGGGTAATTTTGCTAATTTTTATACTATAGATAGTTCATATAACCATGTGAAAATCACTTTATGGAGTTATCGATTACTTATTTAAACA]
[+] EMBL AI975992 [CAGAATTGCTACAAAGCGTTCTGAACATGTACATATTCCGGAGTTTTTAGATATGGCGCCTTATTTGCTATCATGTAAAATTTCAAAGACTGAGGCTTTATCTCAGGCTGTAAATCCATATAATGACAAAAATTCTGAAGGTTTACTTTCCGATACTTCAGAATTATTAGAAAGAGAGTGGGTTTCCAGCGAATTATTTGTCTTGTCATTTATTTTTGAAGTAGAATATATGATTTTCCCCCCTTTTCAACTTATCAGAAATGTTAAATTTGTCATTTGTTCTGACAATACAAAGTATCAATTCATTTGTTTAGTAGTTCAAGGAGAGTTATAATTCACAACTTATGAGATATGAATGACAGCTCTTGAGTGACAGAATGGAGTGCAGTCCAGATAATTTATTGTATGGAACTTGGGTAATTTTGCTAATTTTTATACTATAGATAGTTCATATAACCATGTGAAAATCACTTTATGGAGTTATCGATTACTTATTTAAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7259#0 GATAACACACACTCCTAAATACCTAGTTTTGTACATACAAAGAAGTGATTGGTTAAACAT 60
consensus_7259#1 AAGATTACAAGGTTAGGACTTGGCAATTGTCCAAGTTCCTGAGCACTGTTGAC--AACGA 58
consensus_7259#2 ------------------------------------------------------------
consensus_7259#0 AGCTAGCTTATCCACTGAATCTAATAATATTCGCCAGTTTGGTGGAAATCCTTTTTCAAC 120
consensus_7259#1 AGAAAAGTGACGTATT-ATTATTATTCTATATGTT-GCCATTTATACTATTTGTTTTGAT 116
consensus_7259#2 ------------------------------------------------------------
consensus_7259#0 TACCAGAATTGCTACAAAGCGTTCTGAACATGTA--CATATTCCGGAGTTTTTAGATATG 178
consensus_7259#1 AAGTTGTATTTCTTCAGA-TAACGTGAATAAATCATCAAAAGTTGTACTTACTCCTTAGG 175
consensus_7259#2 ---CAGAATTGCTACAAAGCGTTCTGAACATGTA--CATATTCCGGAGTTTTTAGATATG 55
* *** ** ** * **** * * ** * * * ** * ** *
consensus_7259#0 GCGCCTTATTTGTTATCATGTAAAATTTCAAAGACTGAGGCTTTATCTCAGGCTGTAAAT 238
consensus_7259#1 CCAACTCACAAGTCAATA-GTTCGATTTATTGGATTATAG-TTAATATATCTATGTTTTC 233
consensus_7259#2 GCGCCTTATTTGCTATCATGTAAAATTTCAAAGACTGAGGCTTTATCTCAGGCTGTAAAT 115
* ** * * * * ** **** ** * * ** ** * ***
consensus_7259#0 CCATATAATGACAAAAATTCTGAAGGTTTACTTTCCGATACTTCAGAATTATTAGAAAGA 298
consensus_7259#1 TCAC-TGATTTTTAGCAAACTATATTATCCTTTACTACCACTTTCGCTCTATATTATAG- 291
consensus_7259#2 CCATATAATGACAAAAATTCTGAAGGTTTACTTTCCGATACTTCAGAATTATTAGAAAG- 174
** * ** * * ** * * ** * **** * *** * **
consensus_7259#0 GATTGTCCGAAACCA-TACGTACTCCGTTCAGTTATT-GTTCATGAAGGAGCATTTCATC 356
consensus_7259#1 --TTGTCCGAAACCA-TACGTACTCCGTTCAGTTATT-GTTCATGAAGGAGCATTTCATC 347
consensus_7259#2 -AGAGTGGGTTTCCAGCGAATTATTTGTCTTGTCATTTATTTTTGAAGTAGAATAT-ATG 232
** * *** * * ** ** *** ** ***** ** ** * **
consensus_7259#0 AGTGTGGACATTATATAACGTATCGTAAATGGCACACACCTATGTTGCATGTGCAA---A 413
consensus_7259#1 AGTGTGGACATTATATAACGTATCGTAAATGGCACACACCTATGTTGCATGTGCAA---A 404
consensus_7259#2 ATTTTCCCCCCTTTTCAACTTATCAGAAATGTTAAATTTGTCATTTGTTCTGACAATACA 292
* * * * * * *** **** ***** * * * *** *** *
consensus_7259#0 AAGTGTCGTATTGGCTAGTTCATATTTT--GTCAAGTTTGTGTCAATACGTTTCAAACTA 471
consensus_7259#1 AAGTGTCGTATTGGCTAGTTCATATTTT--GTCAAGTTTGTGTCAATACGTTTCAAACTA 462
consensus_7259#2 AAGTATCAATTCATTTGTTTAGTAGTTCAAGGAGAGTTATAATTCACAACTTATGAGATA 352
**** ** * * ** ** ** * **** * * * ** * **
consensus_7259#0 TTTTCAAGGAATATCAAAT-ACACC-TGAAGCTTA---TAATTCGCCATGGATACTGACT 526
consensus_7259#1 TTTTCAAGGAATATCAAAT-ACACC-TGAAGCTTA---TAATTCGCCATGGATACTGACT 517
consensus_7259#2 TGAATGACAGCTCTTGAGTGACAGAATGGAGTGCAGTCCAGATAATTTATTGTATGGAAC 412
* * * * * * *** ** ** * * * ** **
consensus_7259#0 TCCGATGCTCATGTAA-TACGTGTGCCGTTCA-AACACGTGGAATCAAGTCCTGCTTATT 584
consensus_7259#1 TCCGATGCTCATGNTA-TACGTGTGCCGTTCA-AACACGTGGAATCAAGTCCTGCTTATT 575
consensus_7259#2 TTGGGTAATTTTGCTAATTTTTATACTATAGATAGTTCATATAACCATGTGAAAATCACT 472
* * * * ** * * * * * * * * * * ** ** ** * * *
consensus_7259#0 TGTT--ATTTTACGAACGTTTACGTGGATGGGATGATCAGCGATTTGGAATAAAATCAAC 642
consensus_7259#1 TGTT--ATTTTACGAACGTTTACGTGGATGGGATGATCAG-------------------- 613
consensus_7259#2 TTATGGAGTTATCGATTACTTATTTAAACA------------------------------ 502
* * * ** *** *** * *
consensus_7259#0 GTTTATTCCAAACGGCATCAGCCATCGCGCACAGCATAGCAATCATACGCTATCACCAGT 702
consensus_7259#1 ------------------------------------------------------------
consensus_7259#2 ------------------------------------------------------------
consensus_7259#0 TGAAGAGACTGATACGGGTCACTCGGAAATATATAGCGAAGATGAGTGCGATTCAGATGC 762
consensus_7259#1 ------------------------------------------------------------
consensus_7259#2 ------------------------------------------------------------
consensus_7259#0 TTCGACTGACAAACAATGTGTTTTTAGAAACTTATCAAAAGCAGACATCATTAGATCTTA 822
consensus_7259#1 ------------------------------------------------------------
consensus_7259#2 ------------------------------------------------------------
consensus_7259#0 TGCATTATATACTTCAGCATCTCAGATGTATGATAAATCATGTGATGTATTCTACTTNCC 882
consensus_7259#1 ------------------------------------------------------------
consensus_7259#2 ------------------------------------------------------------
consensus_7259#0 AAGGTGTTTTCTTTTCTACCTATTTTACGGGTACCGTGGGATAATTTTTGAGAACGGATT 942
consensus_7259#1 ------------------------------------------------------------
consensus_7259#2 ------------------------------------------------------------
consensus_7259#0 TCCGGA 948
consensus_7259#1 ------
consensus_7259#2 ------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||