These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7266#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 718 fasta sequence [ATTACACCGGGAAATAGAAGCAGATATGAAAAGGATGAATAACAACTGGAAAGAATTGGAAAGGATCGGCCAGGACAGGGTTGGATGGAGAATGCTGGTGGGTAGCCTATGCTCCTCGACGAGGGGTAACAGGCATAAGTAAGTACTGTGAATTGTTATCAATATTCTTAATACGTTAAAGTCTCAAATATAAAATTTCACTTTGAAATTCAACTGATCTCTTCTGAACATTAGTCCAACATCATCTGACTAGCACAACTAATAAAATGGAGTAGTAGCTTAGTGATTAATGTGGTCAACTTCTATTCAGTAAGTTTCAGATTCCAACTCTGCTCCACCTATCTTGGATCAGGCAACGACATAGTATCACTAGACCTAGCTTGGATTTCAATGGACTAATCTGTACTTTGCAAGTAAGTTGAGTAAATAAAACAAATACAGTAATCAGATTGAGAATAGTAGCTCAAGCCTAAACGACAAACCAATTCATTTGCGAATAGTTGGAGAATTATTGTGATTTTGATTGAGTTATATTCAGTGGGCTANGTGTGCGTGGGTGGGTTCTAATGTGAAACTTTCATCGATGTTTTCCAG-AGACATCATCAGAACAAACTTCAGAAGGAAGTTAGCTACTTGGATTTATCCAAATATGACTAGCAGTTCGTTATGTCGACCTTGA-TAAATACTGTTCATCCCTATTTNG-CATCGCCTGCATGTN] [+] EMBL CD202128 [ATTACACCGGGAAATAGAAGCAGATATGAAAAGGATGAATAACAACTGGAAAGAATTGGAAAGGATCGGCCAGGACAGGGTTGGATGGAGAATGCTGGTGGGTAGCCTATGCTCCTCGACGAGGGGTAACAGGCATAAGTAAGTACTGTGAATTGTTATCAATATTCTTAATACGTTAAAGTCTCAAATATAAAATTTCACTTTGAAATTCAACTGATCTCTTCTGAACATTAGTCCAACATCATCTGACTAGCACAACTAATAAAATGGAGTAGTAGCTTAGTGATTAATGTGGTCAACTTCTATTCAGTAAGTTTCAGATTCCAACTCTGCTCCACCTATCTTGGATCAGGCAACGACATAGTATCACTAGACCTAGCTTGGATTTCAATGGACTAATCTGTACTTTGCAAGTAAGTTGAGTAAATAAAACAAATACAGTAATCAGATTGAGAATAGTAGCTCAAGCCTAAACGACANACCAATTCATTTGCGAATAGTTGGAGAATTATTGTGATTTTGATTGAGTTATATTCAGTGGGCTANGTGTGCGTGGGTGGGTTCTAATGTGAAACTTTCATCGATGTTTTCCAG AGACATCATCAGAAC AACTTCAGAAGG AGGTAGCTACTTGGGATTATC AATATGACTAGCAAGTCGTTATGTCGACCTTGA TAAATACTGTTCATCCCTATTTNG CATCGCCTGCATGT ] [+] EMBL CD066997 [ ATGGAGAATGCTGGTGGGTAGCCTATGCTCCTCGACGAGGGGTAACAGGCATAAGTAAGTACTGTGAATTGTTATCAATATTCTTAATACGTTAAAGTCTCAAATATAAAATTTCACTTTGAAATTCAACTGATCTCTTCTGAACATTAGTCCAACATCATCTGACTAGCACAACTAATAAAATGGAGTAGTAGCTTAGTGATTAATGTGGCCAACTTCTATTCAGTAAGTTTCAGATTCCAACTCTGCTCCACCTATCTTGGATCAGGCAACGACATAGTATCACTAGACCTAGCTTGGATTTCAATGGACTAATCTGTACTTTGCAAGTAAGTTGAGTAAATAAAACAAATACAGTAATCAGATTGAGAGTAGTAGCTCAAGCCTAAACGACAAACCAATTCATTTGCGAATAGTTGGAGAATTATCGTGATTTTGATTGAGTTATATTCAGTGGGCTACGTGCGCGTGGGTGGGTTCTAATGTGAAACTTTCATCGATGTTTTTCAA AGAAATCATCAAAACAAACTTTAGAAGGAAGTTGGCTACTTGGATTTATCCAAATATGACTAACAGTTCG TATTTCCAACTTGA Tta ] [+] EMBL CD145327 [ TACGTTAAAGTCTCAAATATAAAATTTCACTTTGAAATTCAACTGATCTCTTCTGAACATTAGTCCAACATCATCTGACTAGCACAACTAATAAAATGGAGTAGTAGCTTAGTGATTAATGTGGTCATCTTTTATTCATGAAGTATCAGATTCCAACTCTGCTCCACCTATCTTGGATCAGGCAACGACATAGTATCACTAGACCTAGCTTGGATTTCAATGGACTAATCTGTACTTTGCAAGTAAGTTGAGTAAATAAAACAAATACAGTAATCAGATTGAGAATAGTAGCTCAAGCCTAAACGACAAACCAATTCATTTGCGAATAGTTGGAGAATTATTGTGATTTTGATTGAGTTATATTCAGTGGGCTAGGTGTGCGTGGGTGGGTTCTAATGTGAAACTTTCATCGATGTTTTCCAGAAGACATCATCAGAACAAACTTCAGAAGGAAGTTAGCTACTTGGATTTATCCAAATATGACTAGCAGTTCGTTATGTCGACCTTGATTAAATACTGTTCATCCCTATTTTGTCATCGCCTGCATGTN] consensusID : consensus_7266#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence [AATCCTTTTCAGTTCCTTCCAGTTGTTATTCATCCTTTTCATATCTGCTTCTATTTTCCGGCGTAATGTGTTCTTTGGCCTTCCACTTTTCCGCTTCCCTTCTGGATTCCAAGTTAGGGTTTGACTCGTGATGCAGTTTGGTGATTTCCTTATTGTATGTCCTATCCACTTCCAACGTCTTTTCCTAATTTCCTTTTCAGCTGGAAACTGGTTTGTCCTCTCCCATAAAACGCTGTTACTGATAGTATCCGGCCAGTGAATGTTGAGTATTTTGCGTAAACAGCTGTTTATTAATATTTGTATCTTCTTGACGATGGATGTAGTAGTTCTCCACATTATAAAATTAACAGTTTGGATATGGAATTCATGATGATGATGTATATCATCATATTTACTACTATGTTGTACTATTAAAGTATAATTTGGACAATTCAACTGTTTGTATATATAATGCTTGCTTGTTTGGTAATTGTTATGCTATGAATACCGTATTAAACATGTTATTATAATGAACGAGAACAGAAGTGGGGTACGATTGATGTATTTGAACTTTAAATACANACGTCTTAGTCAAATCANAGATCCCAGCCATAAATACTTCCAATGTCCTTNCATTTCTATACCCCAATCACTACTATTCTGGTCTTNCCTTTTCGA] [+] EMBL CD188678 [AATCCTTTTCAGTTCCTTCCAGTTGTTATTCATCCTTTTCATATCTGCTTCTATTTTCCGGCGTAATGTGTTCTTTGGCCTTCCACTTTTCCGCTTCCCTTCTGGATTCCAAGTTAGGGTTTGACTCGTGATGCAGTTTGGTGATTTCCTTATTGTATGTCCTATCCACTTCCAACGTCTTTTCCTAATTTCCTTTTCAGCTGGAAACTGGTTTGTCCTCTCCCATAAAACGCTGTTACTGATAGTATCCGGCCAGTGAATGTTGAGTATTTTGCGTAAACAGCTGTTTATTAATATTTGTATCTTCTTGACGATGGATGTAGTAGTTCTCCACATTATAAAATTAACAGTTTGGATATGGAATTCATGATGATGATGTATATCATCATATTTACTACTATGTTGTACTATTAAAGTATAATTTGGACAATTCAACTGTTTGTATATATAATGCTTGCTTGTTTGGTAATTGTTATGCTATGAATACCGTATTAAACATGTTATTATAATGAACGAGAACAGAAGTGGGGTACGATTGATGTATTTGAACTTTAAATACANACGTCTTAGTCAAATCANAGATCCCAGCCATAAATACTTCCAATGTCCTTNCATTTCTATACCCCAATCACTACTATTCTGGTCTTNCCTTTTCGA] consensusID : consensus_7266#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence [TTTTTTTTTTTTTTTTGCAACTTGATATATTTAACGCATATGGTGCATAATTTATTGATAAGAAAGTTTAGATAAACAATTAAAGTAATGGCATATTATAATTACGGGGTTTACCTTTCTTTTCTTTCCTTTTGAATTGTTCAAATGACACTAAGTACCATGTTCTGGATGAATGTAAGTGTTTATAGATAAGTGTATATGTATATATAAGTGTGTATGTGTGTTTGTATGGAACCTGGTGAATTTGGTGCATTAGTTGCTAGAGTATAGGAACCAATGACGATTTGATGTCTATTGTTTACATACATATATATATATATTTATTTACTTCCTTAATTATATATATGAGCAA] [+] EMBL AI395838 [TTTTTTTTTTTTTTTTGCAACTTGATATATTTAACGCATATGGTGCATAATTTATTGATAAGAAAGTTTAGATAAACAATTAAAGTAATGGCATATTATAATTACGGGGTTTACCTTTCTTTTCTTTCCTTTTGAATTGTTCAAATGACACTAAGTACCATGTTCTGGATGAATGTAAGTGTTTATAGATAAGTGTATATGTATATATAAGTGTGTATGTGTGTTTGTATGGAACCTGGTGAATTTGGTGCATTAGTTGCTAGAGTATAGGAACCAATGACGATTTGATGTCTATTGTTTACATACATATATATATATATTTATTTACTTCCTTAATTATATATATGAGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7266#0 ATTACACCGGGAAATAGAAGCAGATATGAAAAGGATGAATAACAACTGGAAAGAATTGGA 60 consensus_7266#2 ------------------------------------------------------------ consensus_7266#1 --------------------AATCCTTTTCAGTTCCTTCCAGTTGTTATTCATCCTTTTC 40 consensus_7266#0 AAGGATCGGCCAGGACAGGGTTGGATGGAGAATGCTGGTGGGTAGCCTATGCTCCTCGAC 120 consensus_7266#2 ------------------------------------------------------------ consensus_7266#1 ATATCTGCTTCTATTTTCCGGCGTAATGTGTTCTTTGGCCTTCCACTTTTCCGCTTCCCT 100 consensus_7266#0 GAGGGGTAACAGGCATAAGTAAGTACTGTGAATTGTTATCAATATTCTTAATACGTTAAA 180 consensus_7266#2 ------------------------------------------------------------ consensus_7266#1 TCTGGATTCCAAGTTAGGGTTTGACTCGTGATGCAGTTTGGTGATTTCCTTATTGTATGT 160 consensus_7266#0 GTCTCAAATATAAAATTTCACTTTGAAATTCAACTGATCTCTTCTGAACATTAGTCCAAC 240 consensus_7266#2 --------TTTTTTTTTTTTTTTTGCAACTTGAT--ATATTTAACGCATAT-GGTGCATA 49 consensus_7266#1 CCTATCCACTTCCAACGTCTTTTCCTAATTTCCT---TTTCAGCTGGAAACTGGTTTGTC 217 * * ** ** * * * * * * ** consensus_7266#0 ATCATCTGACTAGCA----CAACTAATAAAATGGAGTAGTAGCTTA--GTGATTAATGTG 294 consensus_7266#2 ATTTATTGATAAGAAAGTTTAGATAAACAATTAAAGTAATGGCATATTATAATTACGGGG 109 consensus_7266#1 CTCTCCC-ATAAAACGCTGTTACTGATAGTATCCGGCCAGTGAATGT--TGAGTATTTTG 274 * * * * * * * * * * * ** * consensus_7266#0 -GTCAACTTCTATTCAGTAAGTTTCAGATT-CCAACTCTGCTCCACCTATCTTGGATCAG 352 consensus_7266#2 -TTTACCTTTCTTTTCTTTCCTTTTGAATTGTTCAAATGACACTAAGTACCATGTTCTGG 168 consensus_7266#1 CGTAAACAGCTGTTTATTAATATTTGTATCTTC---TTGACGATGGATGTAGTAGTTCT- 330 * * * ** * ** ** * * * consensus_7266#0 GCAACGACATAGTATCACTAGACCTAGCTTGGATTTCAATGGACTAATCTGTACTTTGCA 412 consensus_7266#2 ATGAATGTA-AGTGTTTATAGATAAG---TGTATATGTATATATAAGTGTGTA-TGTGTG 223 consensus_7266#1 -CCACATTATAAAATTAACAGTTTGGATATGGAATTCATGATGATGATGTATATCATCAT 389 * * * * ** ** * * * * ** * consensus_7266#0 AGTAAGTTGAGTA-AATAAAACAAATACAGTAATCAGATTGAGAATAGTAGCTCAAGCCT 471 consensus_7266#2 TTTGTATGGAACCTGGTGAATTTGGTGCATTAGTT-GCTAGAGTATAGGAACCAATGACG 282 consensus_7266#1 ATTTACTACTATGTTGTACTATTAAAGTA-TAATT---TGGACAATTCAACTGTTTGTAT 445 * * * * ** * * ** ** * * consensus_7266#0 AAACGACAAACCAATTCATTTGCGAATAGTTGGAGAATTATTGTGATTTTGATTGAGTTA 531 consensus_7266#2 ATTTGATG--TCTATT-GTTTACATACATATATATATATATTTATTTACTTCCTTAATTA 339 consensus_7266#1 ATATAATG--CTTGCTTGTTTGGTAATTGTTATGCTATGAATACCGTATTAAACATGTTA 503 * * * *** * * * * * * *** consensus_7266#0 TATTCAGTGGGCTANGTGTGCGTGGGTGGGTTCTAATGTGAAACTTTCATCGATGTTTTC 591 consensus_7266#2 TATATA-TGAGCAA---------------------------------------------- 352 consensus_7266#1 T-TATAATGAACGAGA---ACAGAAGTGGGGTACGATTGATGTATTTGAACTTTAAATAC 559 * * * ** * * consensus_7266#0 CAGAGACATCATCAGAACAAACTTCAGAAGGAAGTTAGCTACTTGGATTTATCCAAATAT 651 consensus_7266#2 ------------------------------------------------------------ consensus_7266#1 ANACGTCTTAGTCAAATCANAGATCCCAGCCA---TAAATACTTCCAAT-GTCCTTNCAT 615 consensus_7266#0 GACTAGCAGTTCGTTATGTCGACCTTGATAAATACTGTTCATCCCTATTTNGCATCGCCT 711 consensus_7266#2 ------------------------------------------------------------ consensus_7266#1 TTCTATACCCCAATCACTACTATTCTGGTCTTNCCTTTTCGA------------------ 657 consensus_7266#0 GCATGTN 718 consensus_7266#2 ------- consensus_7266#1 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||