These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7279#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 753 fasta sequence [CTACAAGAATGATTAGCATGTANTAATAGCTTTTATAATTAAAATGCCTCTATATGGAGTTCACTTATGACTACCCAAAGCTCATGTAGAAGCTCCTATTGCAGGATCAATAATTCTAGCTGCAATTTTACTGAAACTAGGTGGTTACGGAATAATACGAGTATCAATTATCCTTGATCCTATAACAGAGACTATAGCATATCCCTTCATTCTTTTATCACTATGAGGTATACTTATAACAAGTTCTATCTGCCTACGACAAACAGATCTAAAGTCATTAATCGCTTACTCTTCAGTAAGTCATATAGCACTAGTTATTGCAGCTATTATAATTCAAACTCCCTGAAGTTTTATAGGAGCCTCAGCATTAATAATCGCACATGGACTCACATCATCACTATTATTCTGCCTAGCAAATACTAACTATGAACGAATCCATAGTCGAACTATAATTATAGCCCGAGGCCTTCAAACAGCATTCCCTCTAATAGCAACTCTATGATTTCTAGGAAGCCTGGCAAACCTAGCCTTACCCCCTTCAATTAACCTAATTGGAGAACTACTTATTACAATTACACTATTCTCCTGATCACACCTGTCAATCATTCTTGTAGGTACAAATATCCTAATTACAGCTCTATACTCACTCTATATACTTATCATAACCCAACGAGGAAAACTTACATTTCATATAAACAACCTCCAACCTTCCTACACACGAGAGTTAACCCTAATAATACTACACATCACACC] [+] EMBL CD168170 [CTACAAGAATGATTAGCATGTANTAATAGCTTTTATAATTAAAATGCCTCTATATGGAGTTCACTTATGACTACCCAAAGCTCATGTAGAAGCTCCTATTGCAGGATCAATAATTCTAGCTGCAATTTTACTGAAACTAGGTGGTTACGGAATAATACGAGTATCAATTATCCTTGATCCTATAACAGAGACTATAGCATATCCCTTCATTCTTTTATCACTATGAGGTATACTTATAACAAGTTCTATCTGCCTACGACAAACAGATCTAAAGTCATTAATCGCTTACTCTTCAGTAAGTCATATAGCACTAGTTATTGCAGCTATTATAATTCAAACTCCCTGAAGTTTTATAGGAGCCTCAGCATTAATAATCGCACATGGACTCACATCATCACTATTATTCTGCCTAGCAAATACTAACTATGAACGAATCCATAGTCGAACTATAATTATAGCCCGAGGCCTTCAAACAGCATTCCCTCTAATAGCAACTCTATGATTTCTAGGAAGCCTGGCAAACCTAGCCTTACCCCCTTCAATTAACCTAATTGGAGAACTACTTATTACAAT ] [+] EMBL CD169338 [ AATTCAAACTCCCTGAAGTTTTATAGGAGCCTCAGCATTAATAATCGCACATGGACTCACATCATCACTATTATTCTGCCTAGCAAATACTAACTATGAACGAATCCATAGTCGAACTATAATTATAGCCCGAGGCCTTCAAACAGCATTCCCTCTAATAGCAACTCTATGATTTCTAGGAAGCCTGGCAAACCTAGCCTTACCCCCTTCAATTAACCTAATTGGAGAACTACTTATTACAATTACACTATTCTCCTGATCACACCTGTCAATCATTCTTGTAGGTACAAATATCCTAATTACAGCTCTATACTCACTCTATATACTTATCATAACCCAACGAGGAAAACTTACATTTCATATAAACAACCTCCAACCTTCCTACACACGAGAGTTAACCCTAATAATACTACACATCACAC ] [+] EMBL CD169354 [ AATTCAAACTCCCTGAAGTTTTATAGGAGCCTCAGCATTAATAATCGCACATGGACTCACATCATCACTATTATTCTGCCTAGCAAATACTAACTATGAACGAATCCAAAGTCGAACTATAATTATAGCCCGAGGCCTTCAAACAGCATTCCCTCTAATAGCAACTCTATGATTTCTAGGAAGCCTGGCAAACCTAGCCTTACCCCCTTCAATTAACCTAATTGGAGAACTACTTATTACAATTACACTATTCTCCTGATCACACCTGTCAATCATTCTTGTAGGTACAAATATCCTAATTACAGCTCTATACTCACTCTATAGACTTATCATAACCCAACGAGGAAAACTTACATTTCATATAAACAACCTCCAACCTTCCTACAC ] [-] EMBL CD169590 [ ATTCAAACTCCCTGAAGTTTTATAGGAGCCTCAGCATTAATAATCGCACATGGACTCACATCATCACTATTATTCTGCCTAGCAAATACTAACTATGAACGAATCCATAGTCGAACTATAATTATAGCCCGAGGCCTTCAAACAGCATTCCCTCTAATAGCAACTCTATGATTTCTAGGAAGCCTGGCAAACCTAGCCTTACCCCCTTCAATTAACCTAATTGGAGAACTACTTATTACAATTACACTATTCTCCTGATCACACCTGTCAATCATTCTTGTAGGTACAAATATCCTAATTACAGCTCTATACTCACTCTATATACTTATCATAACCCAACGAGGAAAACTTACATTTCATATAAACAACCTCCAACCTTCCTACACACGAGAGTTAACCCTAATAATACTACACATCACACC] consensusID : consensus_7279#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence [TCACTGGGAGAACCAGCTATTATAATTCAAACTCCCTGAAGTTTTATAGGAGCCTCAGCATTACTAATCGCACATGGACTCACATCATCACTATTATTCTGCCTAGCAAATACTAACTATGAACGAATCCATAGTCGAACTATAATTATAGCCCGAGGCCTTCAAACAGCATTCCCTCTAATAGCAACTCTATGATTTCTAGGAAGCCTGGCAAACCTAGCCTTACCCCCTTCAATTAACCTAATTGGAGAACTACTTATTACAATTACACTATTCTCCTGATCACACCTGTCAATCATTCTTGTAGGTACAAATATCCTAATTACAGCCCTATACTCACTCTATATACTTATCATAACCCAACGAGGAAAACTTACATTTCATATAAACAACCTCCAACCTTCCTACACACGAGAGTTAACC] [+] EMBL CD168892 [TCACTGGGAGAACCAGCTATTATAATTCAAACTCCCTGAAGTTTTATAGGAGCCTCAGCATTACTAATCGCACATGGACTCACATCATCACTATTATTCTGCCTAGCAAATACTAACTATGAACGAATCCATAGTCGAACTATAATTATAGCCCGAGGCCTTCAAACAGCATTCCCTCTAATAGCAACTCTATGATTTCTAGGAAGCCTGGCAAACCTAGCCTTACCCCCTTCAATTAACCTAATTGGAGAACTACTTATTACAATTACACTATTCTCCTGATCACACCTGTCAATCATTCTTGTAGGTACAAATATCCTAATTACAGCCCTATACTCACTCTATATACTTATCATAACCCAACGAGGAAAACTTACATTTCATATAAACAACCTCCAACCTTCCTACACACGAGAGTTAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7279#0 CTACAAGAATGATTAGCATGTANTAATAGCTTTTATAATTAAAATGCCTCTATATGGAGT 60 consensus_7279#1 ------------------------------------------------------------ consensus_7279#0 TCACTTATGACTACCCAAAGCTCATGTAGAAGCTCCTATTGCAGGATCAATAATTCTAGC 120 consensus_7279#1 ------------------------------------------------------------ consensus_7279#0 TGCAATTTTACTGAAACTAGGTGGTTACGGAATAATACGAGTATCAATTATCCTTGATCC 180 consensus_7279#1 ------------------------------------------------------------ consensus_7279#0 TATAACAGAGACTATAGCATATCCCTTCATTCTTTTATCACTATGAGGTATACTTATAAC 240 consensus_7279#1 ------------------------------------------------------------ consensus_7279#0 AAGTTCTATCTGCCTACGACAAACAGATCTAAAGTCATTAATCGCTTACTCTTCAGTAAG 300 consensus_7279#1 ------------------------------------------------------------ consensus_7279#0 TCATATAGCACTAGTTATTGCAGCTATTATAATTCAAACTCCCTGAAGTTTTATAGGAGC 360 consensus_7279#1 -------TCACTGGGAGAACCAGCTATTATAATTCAAACTCCCTGAAGTTTTATAGGAGC 53 **** * **************************************** consensus_7279#0 CTCAGCATTAATAATCGCACATGGACTCACATCATCACTATTATTCTGCCTAGCAAATAC 420 consensus_7279#1 CTCAGCATTACTAATCGCACATGGACTCACATCATCACTATTATTCTGCCTAGCAAATAC 113 ********** ************************************************* consensus_7279#0 TAACTATGAACGAATCCATAGTCGAACTATAATTATAGCCCGAGGCCTTCAAACAGCATT 480 consensus_7279#1 TAACTATGAACGAATCCATAGTCGAACTATAATTATAGCCCGAGGCCTTCAAACAGCATT 173 ************************************************************ consensus_7279#0 CCCTCTAATAGCAACTCTATGATTTCTAGGAAGCCTGGCAAACCTAGCCTTACCCCCTTC 540 consensus_7279#1 CCCTCTAATAGCAACTCTATGATTTCTAGGAAGCCTGGCAAACCTAGCCTTACCCCCTTC 233 ************************************************************ consensus_7279#0 AATTAACCTAATTGGAGAACTACTTATTACAATTACACTATTCTCCTGATCACACCTGTC 600 consensus_7279#1 AATTAACCTAATTGGAGAACTACTTATTACAATTACACTATTCTCCTGATCACACCTGTC 293 ************************************************************ consensus_7279#0 AATCATTCTTGTAGGTACAAATATCCTAATTACAGCTCTATACTCACTCTATATACTTAT 660 consensus_7279#1 AATCATTCTTGTAGGTACAAATATCCTAATTACAGCCCTATACTCACTCTATATACTTAT 353 ************************************ *********************** consensus_7279#0 CATAACCCAACGAGGAAAACTTACATTTCATATAAACAACCTCCAACCTTCCTACACACG 720 consensus_7279#1 CATAACCCAACGAGGAAAACTTACATTTCATATAAACAACCTCCAACCTTCCTACACACG 413 ************************************************************ consensus_7279#0 AGAGTTAACCCTAATAATACTACACATCACACC 753 consensus_7279#1 AGAGTTAACC----------------------- 423 ********** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||