These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7295#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 556 fasta sequence [GCAAATCTATCCAAAGAACCTGAACCACATACAATAGTTAAAATACCACAAGAAGAAAGATTAATTTAAATATTAAGAAATGGATTACCTTTTTTTTCTATGGTTTGTTCCGTTTGTTTTGGTTTTTTTTTTGGATTTTTTAAGTTTGATTTCGGTATTTCCCCCCCCCCTCCTTTATCTCATCTTGATTTGTTTCCATCTATCTATCTATCTATAGCGTAAATGTATTGAATTTGCATTGAAAGCTAGACCAGTGAAACGTTATATACCAAAAGAAAATTTTCAATATCGTATATGGTGGTTTATTACATCACAACCATTTGAATATTGCATTTTTATTTTTATATTAATTAATACAATCTCATTGGCAATGAAAGTGAGCTTCTTTTTCTTTGTTACTATTGTTTGTTTATTTATGTTTACTACTTATGAATTAGATAGTGTTGAAGTAAATAAGTAGTATAGAAGAAGTTGTATAAAGAAAAATGATAACTTATGATTGGATTNTCTATCTACTTTTTATGAAGGAGAAGAAATAATTCATTAAAAGTAAACA] [+] EMBL CD168343 [GCAAATCTATCCAAAGAACCTGAACCACATACAATAGTTAAAATACCACAAGAAGAAAGATTAATTTAAATATTAAGAAATGGATTACCTTTTTTTTCTATGGTTTGTTCCGTTTGTTTTGGTTTTTTTTTTGGATTTTTTAAGTTTGATTTCGGTATTTCCCCCCCCCCTCCTTTATCTCATCTTGATTTGTTTCCATCTATCTATCTATCTATAGCGTAAATGTATTGAATTTGCATTGAAAGCTAGACCAGTGAAACGTTATATACCAAAAGAAAATTTTCAATATCGTATATGGTGGTTTATTACATCACAACCATTTGAATATTGCATTTTTATTTTTATATTAATTAATACAATCTCATTGGCAATGAAAGTGAGCTTCTTTTTCTT ] [+] EMBL CD152680 [ ATAGTTAAAATACCACAAGAAGAAAGATTAATTTAAATATTAAGAAATGGATTACCTTTTTTTTCTATGGTTTGTTCCGTTTGTTTTGGTTTTTTTTTTGGATTTTTTAAGTTTGATTTCGGTATTTCCCCCCCCCCTCCTTTATCTCATCTTGATTTGTTTCC ATCTATCTATCTATAGCGTAAATGTATTGAATTTGCATTGAAAGCTAGACCAGTGAAACGTTATATACCAAAAGAAAATTTTCAATATCGTATATGGTGGTTTATTACATCACAACCATTTGAATATTGCATTTTTATTTTTATATTAATTAATACAATCTCATTGGCAATGAAAGTGAGCTTCTTTTTCTTTGTTACTATTGTTTGTTTATTTATGTTTACTACTTATGAATTAGATAGTGTTGAAGTAAATAAGTAGTATAGAAGAAGTTGTATAAAGAAAAATGATAACTTATGATTGGATTNTCTATCTACTTTTTATGAAGGAGAAGAAATAATTCATTAAAAGTAAACA] [+] EMBL CD152783 [ ATAGTTAAAATACCACAAGAAGAAAGATTAATTTAAATATTAAGAAATGGATTACCTTTTTTTTCTATGGTTTGTTCCGTTTGTTTTGGTTTTTTTTTTGGATTTTTTAAGTTTGATTTCGGTATTT CCCCCCCCCTCCTTTATCTCATCTTGATTTGTTTCCATCTATCTATCTATCTATAGCGGAAATGTATTGGATTTGCATTGAAAGCTAAACCAGTGAAACGTTATATACCAAAAGAAAATTTTCAATATCGTATATGGTGGTTTATTACATCACAACCATTTGAATATTGCATTTTTATTTTTATATTAATTAATACAATCTCCTTGG ] [+] EMBL CD152828 [ ATAGTTAAAATACCACAAGAAGAAAGATTAATTTAAATATTAAGAAATGGATTACCTTTTTTTTCTATGGTTTGTTCCGTTTGTTTTGGTTTTTTTTTTGGATTTTTTAAactcc ] consensusID : consensus_7295#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence [CACAAACATCGAATATTTCGAATACAACCACTAACAATGAATCTAAACCTGGACTTAGTCCTGGTATATTAGCAATTGTCATTATTATACCAATATTAGTTATTATTGGACTTAGCATAGGTGGTTATTTTTTATATCGTTGGTTACATAAACGTCGTTCATCACATGATATATATCAACCAAATTATATGGAAAATGAAGCGAATCTATCCAAAGAACCTGAACCACATACAATAGTTAAAATACCACAAGAAGAAAGATTAATTTAAATATTAATAAATGAAATAACCCTTCTCTTTTCTACCAATATGGTAAGGTTATAAGTTGGTTGTGATATCGAATTATTGCCGTTTTTACAGAAAAGCTATGGAAAGTCTTATGTTCCTTTCGAATAATATCGAATTGTTTCCACTTTTTGATCAAC] [+] EMBL CD196671 [CACAAACATCGAATATTTCGAATACAACCACTAACAATGAATCTAAACCTGGACTTAGTCCTGGTATATTAGCAATTGTCATTATTATACCAATATTAGTTATTATTGGACTTAGCATAGGTGGTTATTTTTTATATCGTTGGTTACATAAACGTCGTTCATCACATGATATATATCAACCAAATTATATGGAAAATGAAGCGAATCTATCCAAAGAACCTGAACCACATACAATAGTTAAAATACCACAAGAAGAAAGATTAATTTAAATATTAATAAATGAAATAACCCTTCTCTTTTCTACCAATATGGTAAGGTTATAAGTTGGTTGTGATATCGAATTATTGCCGTTTTTACAGAAAAGCTATGGAAAGTCTTATGTTCCTTTCGAATAATATCGAATTGTTTCCACTTTTTGATCAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7295#0 GCAAATCTATCCAAAGAACCTGAACCACATACAATAGTTAAAATACCACAAGAAGAAAGA 60 consensus_7295#1 ---------------------CACAAACATCGAATATTTCGAATACAACCACT--AACAA 37 * **** **** ** ***** ** * ** * consensus_7295#0 TTAATTTAAATATTAAGAAATGGATTACCTTTTTTTTCTATGGT--TTGTTCCGTTTGTT 118 consensus_7295#1 TGAATCTAAACCT--GGACTTAGTCCTGGTATATTAGCAATTGTCATTATTATACCAATA 95 * *** **** * ** * * * * ** * ** ** ** ** * consensus_7295#0 TTGGTTTTTTTTTTGGATTTTTTAAGTTTGATTTCGGTATTTCCCCCCCCCCTCCTTTAT 178 consensus_7295#1 TTAGTTATTATT--GGACTTAGCATAGGTGGTTATTTTTTATATCGTTGGTTACATAAAC 153 ** *** ** ** *** ** * ** ** * * * * * * * consensus_7295#0 CTCATCTTGATTTGTTTCCATCTATCTATCTATCTATAGCGTAAATGTATTGAATTTGCA 238 consensus_7295#1 GTCGTTC--ATCACATGATATATATCAACCAAATTATATGGAAAATGAAGCGAATCTATC 211 ** * ** * ** **** * * * **** * ***** * **** * consensus_7295#0 TTGAAAGC-TAGACCA---GTGAAACGTTATATACCAAAAGAAAAT-------TTTCAAT 287 consensus_7295#1 CAAAGAACCTGAACCACATACAATAGTTAAAATACCACAAGAAGAAAGATTAATTTAAAT 271 * * * * **** * * * * ****** ***** * *** *** consensus_7295#0 ATCG-TATATGG--TGGTTTATTACATCACAACCATTTGAATA---TTGCATTTTTATTT 341 consensus_7295#1 ATTAATAAATGAAATAACCCTTCTCTTTTCTACCAATATGGTAAGGTTATAAGTTGGTTG 331 ** ** *** * * * * * **** * ** ** * ** ** consensus_7295#0 TTATATT-AATTAATACAATCTCATTGGCAATG--AAAGTGAGCTTCTTTTTCTTTGTTA 398 consensus_7295#1 TGATATCGAATTATTGCCGTTTTTACAGAAAAGCTATGGAAAGTCTTATGTTCCTTTCGA 391 * **** ***** * * * * * ** * * * ** * * *** ** * consensus_7295#0 CTATTGTTTGTTTATTTATGTTTACTACTTATGAATTAGATAGTGTTGAAGTAAATAAGT 458 consensus_7295#1 ATAATATCGAATTGTTTCCACTTTTTGATCAAC--------------------------- 424 ** * * ** *** ** * * * consensus_7295#0 AGTATAGAAGAAGTTGTATAAAGAAAAATGATAACTTATGATTGGATTNTCTATCTACTT 518 consensus_7295#1 ------------------------------------------------------------ consensus_7295#0 TTTATGAAGGAGAAGAAATAATTCATTAAAAGTAAACA 556 consensus_7295#1 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||