These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7327#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 912 fasta sequence [CTCGCAGGCCAGAATTCGGTCCGAGGTTGGCGCTGGAATTGTTGTAACTAGTAGTCAACAAGTTGGTGTACTACTTCGATTGGAACCGAATACACAATTAAAGATGTATTGCCTAACTATTCGCAGTACAAGAGAAATCGTCTCGTCTCATTTAGCCAAACTCATTGAACAATTGATCTGAATTGAATTGTTTTGTCTTCATTGTCACTATTATTGGTTATATATTCAATTAATAATCTGATCATTGTTAATGTGACCATTATGGATCAATCCAATGGGATATTCTTTATAATTTATATTACAATGTGGTTTCATCTTGGCAAAAAATAGATGTATGACAGTAATGATGATGATGACTATGAGCTATGAGGATTCTTTATCATTCCCATTATACATATATTATTATTTTCATTGCCGTTGTTGTTTTCTCTTTGGATAAAACTTTTAAAAACAAAAGGCAAATACGTTTTCCACTTAGTCCTCAGAATAAAAATTTCTCTCTCTCTAGTTTTACATGCACATGTGTATGTGTATTCTTGATTAAATTGTATTTAATTTATTCATTTCTG-TTTATGCTACTGTCTTCTTTCACGTTTGTTTCTCTGTTTTCCCTTCTTCTGTATCGNTTGATTATTTAGTTTAACTTATACCTACTTGCCTATTTACTTACTTACTTGTAGAGTATTATTTTTTAGTTAGTTTTCATTCTGTTCATGATTGTTTCAATCATTACTTGTTTATTATTTCATAGGATTCTATTGTATTAGTAATAATAAGAATATTTTGTTTTGGTGTGGTTGCCATATTATGTGACATGCAACCATCATCATTGNTACCACCCTAATTTCAATGGGGATTACCTTTTTTTGGTACCATCTACTGATCTCCTAATATCATCCATTCACTAATACA] [+] EMBL CD077701 [CTCGCAGGCCAGAATTCGGTCCGAGGTTGGCGCTGGAATTGTTGTAACTAGTAGTCAACAAGTTGGTGTACTACTTCGATTGGAACCGAATACACAATTAAAGATGTATTGCCTAACTATTCGCAGTACAAGAGAAATCGTCTCGTCTCATTTAGCCAAACTCATTGAACAATTGATCTGAATTGAATTGTTTTGTCTTCATTGTCACTATTATTGGTTATATATTCAATTAATAA ] [+] EMBL CD202041 [ ATTGATCTGAATTGAATTGTTTTGTCTTCATTGTCACTATTATTGCTTATATATTCAATTAATAATCTGATCATTGTTAATGTGACCATTATGGATCAATCCAATGGGATATTCTTTATAATTTATATTACAATGTGGTTTCATCTTGGCAAAAAATAGATGTATGACAGTAATGATGATGATGACTATGAGCTATGAGGATTCTTTATCATTCCCATTATACATATATTATTATTTTCATTGCCGTTGTTGTTTTCTCTTTGGATAAAACTTTTAAAAACAAAAGGCAAATACGTTTTCCACTTAGTCCTCAGAATAAAAATTTCTCTCTCTCTAGTTTTACATGCACATGTGTATGTGTATTCTTGATTAAATTGTATTTAATTTATTCATTTCTG TTTATGCTACTGTCTTCTTTCACGTTTGTTTCTCTGTTTTCCCTTCTTCTGTATCGNTTGATTATTTAGTTTAACTTATACCTACTTGCCTATTTACTTACTTACTTGTAGAGTATTATTTTTTAGTTAGTTTTCATTCTGTTCATGATTGTTTCAATCATTACTTGTTTATTATTTCATAGGATTCTATTGTATTAGTAATAATAAGAATATTTTGTTTTGGTGTGGTTGCCATATTATGTGACATGCAACCATCATCATTGNTACCACCCTAATTTCAATGGGGATTACCTTTTTTTGGTACCATCTACTGATCTCCTAATATCATCCATTCACTAATACA] [+] EMBL CD078172 [ ATTATGGATCAATCCAATGGGATATTCTTTATAATTTATATTACAATGTGGTTTCATCTTGGCAAAAAATAGAT ] [-] EMBL CD201616 [ TCATTCCCATTATACATATATTATTATTTTCATTGCCGTTGTTGTTTTCTCTTTGGATAAAACTTTTAAAAACAAAAGGCAAATACGTTTTCCACTTAGTCCTCAGAATAAAAATTTCTCTCTCTCTAGTTTTACATGCACATGTGTATGTGTATTCTTGATTAAATTGTATTTAATTTATTCATTTCTGTTTTATGCTACTGTCTTCTTTCACGTTTGTTTCTCTGTTTTCCCTTCTTCTGTATCGTTTGATTATTTAGTTTAACTTATACCTACTTGCCTATTTACTTACTTACTTGTAGAGTATTATTTTTTAGTTAGTTTTCATTCTGTTCATGATTGTTTCAATCATTACTTGTTTATTATTTCATAGGATTCTATTGTATTAGTAATAATAAGAATATTTTGTTTT GTGTGTTTGCCATATTATGTGACATGCAACCATCATCATTGTTAC ] consensusID : consensus_7327#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence [GTCTAAACTCCCCTCGACCTTGTTTAACTTGTACAACCGACTAGTATCATGAGGCCTTAAAATTATAGTGCGGCTCAAGGCCAAGAATATGTCTATGCGTATACATCTGGCAAATAAGTGAATAATTATTTTTAACAAAAATTAGTGTATTAATTAGGACTGTACATTCGATAATTTAAAATCTACCTTTAATTGTGTATTCGGTTCCAATCGAAGTATTACACCAACTTGTTGACTACTAGTTACAACAATTCCAGCGCCAACAACATT] [+] EMBL CD117799 [GTCTAAACTCCCCTCGACCTTGTTTAACTTGTACAACCGACTAGTATCATGAGGCCTTAAAATTATAGTGCGGCTCAAGGCCAAGAATATGTCTATGCGTATACATCTGGCAAATAAGTGAATAATTATTTTTAACAAAAATTAGTGTATTAATTAGGACTGTACATTCGATAATTTAAAATCTACCTTTAATTGTGTATTCGGTTCCAATCGAAGTATTACACCAACTTGTTGACTACTAGTTACAACAATTCCAGCGCCAACAACATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7327#0 CTCGCAGGCCAGAATTCGGTCCGAGGTTGGCGCTGGAATTGTTGTAACTAGTAGTCAACA 60 consensus_7327#1 ------------------------------------------------------------ consensus_7327#0 AGTTGGTGTACTACTTCGATTGGAACCGAATACACAATTAAAGATGTATTGCCTAACTAT 120 consensus_7327#1 -----------------------------------------GTCTAAACTCCCCTCGACC 19 * * * ** consensus_7327#0 TCGCAGTACAAGAGAAATCGTCTCGTCTCATTTAGCC--AAACTCATTGAACAATTGATC 178 consensus_7327#1 TTGTTTAACTTGTACAACCGACTAGTATCATGAGGCCTTAAAATTATAGTGCGGCT---C 76 * * ** * ** ** ** ** **** *** *** * ** * * * * consensus_7327#0 TGAATTGAATTGTTTTGTCTTCATTGTCACTATTATTGGTTATATATTCAATTAATAATC 238 consensus_7327#1 AAGGCCAAG--AATATGTCTATGCGTATACATCTGGCAAATAAGTGAATAATTATT--TT 132 * * ***** ** * ** * ***** * * consensus_7327#0 TGATCATTGTTAATGTGACCATTATGGATCAATCCAATGGGATATTCTTTATAATTTATA 298 consensus_7327#1 TAACAAAAATTAGTGTATTAATTAGGACT--GTACATTCG---ATAATTTAAAATCTACC 187 * * * *** *** **** * * * ** * * ** **** *** ** consensus_7327#0 TTACAATGTGGTTTCATCTTGGCAAAAAATAGATGTATGACAGTAATGATGATGATGACT 358 consensus_7327#1 TTTAATTGTGTATTCGGTTCC------AATCGAAGTATTACACCAAC----TTGTTGACT 237 ** * **** *** * *** ** **** *** ** ** ***** consensus_7327#0 ATGAGCTATGAGGATTCTT-TATCATTCCCATTATACATATATTATTATTTTCATTGCCG 417 consensus_7327#1 ACTAGTTACAACAATTCCAGCGCCAACAACATT--------------------------- 270 * ** ** * **** ** **** consensus_7327#0 TTGTTGTTTTCTCTTTGGATAAAACTTTTAAAAACAAAAGGCAAATACGTTTTCCACTTA 477 consensus_7327#1 ------------------------------------------------------------ consensus_7327#0 GTCCTCAGAATAAAAATTTCTCTCTCTCTAGTTTTACATGCACATGTGTATGTGTATTCT 537 consensus_7327#1 ------------------------------------------------------------ consensus_7327#0 TGATTAAATTGTATTTAATTTATTCATTTCTGTTTATGCTACTGTCTTCTTTCACGTTTG 597 consensus_7327#1 ------------------------------------------------------------ consensus_7327#0 TTTCTCTGTTTTCCCTTCTTCTGTATCGNTTGATTATTTAGTTTAACTTATACCTACTTG 657 consensus_7327#1 ------------------------------------------------------------ consensus_7327#0 CCTATTTACTTACTTACTTGTAGAGTATTATTTTTTAGTTAGTTTTCATTCTGTTCATGA 717 consensus_7327#1 ------------------------------------------------------------ consensus_7327#0 TTGTTTCAATCATTACTTGTTTATTATTTCATAGGATTCTATTGTATTAGTAATAATAAG 777 consensus_7327#1 ------------------------------------------------------------ consensus_7327#0 AATATTTTGTTTTGGTGTGGTTGCCATATTATGTGACATGCAACCATCATCATTGNTACC 837 consensus_7327#1 ------------------------------------------------------------ consensus_7327#0 ACCCTAATTTCAATGGGGATTACCTTTTTTTGGTACCATCTACTGATCTCCTAATATCAT 897 consensus_7327#1 ------------------------------------------------------------ consensus_7327#0 CCATTCACTAATACA 912 consensus_7327#1 --------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||