These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7328#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1149 fasta sequence [CTTGTGGGTACTGTTGTATCAGGTGTTATTGGATGCATAATGGCAGCAGTATTCAGTTTACAAGATCTAGTTGATATGATGTCAATCGGAACACTTCTTGCTTATACTCTAGTGTCTGTTTCTGTGCTTCTTTTGAGAGGACAACAAATGTCCATTGGATATTGCCTTAATAACATTAAAGATTGTACAGAAGTATTGATGGACGATGAAAAATGGCCAGGTGGTAAATTATCCTTATCTGATGAAAAATTATATCCACTCAAGATTTTGAATAAAATGACAGACAATACACTTAGTAGTAATAAAGAACGATCGAATGGTTTTGATGAATATTCCGATCGTGATAAACTCTCTGTTTCCCCAAATAACATTGATAATCCAAGTTTATCAAAGGCCTTGAAACAAACAAACAATTCATCACTTACGGATAATATTCATCTCAACATTTCAAGTTACTTCCAAAGATGTTTCAAGCTTGAACCTGGTCTAGATAAACCATCTAAAACTACTGAATTAATCTATAAAATAAATAGTTACTTATTACTTTGCTTCATTTTTCTTGGNCATCTGGGTATATTACTGTTAGNNATAACTACCTGAAGAGGCAACAAAAAATATGATAGTCACGGTCCCAATATGGACGTTTGTTGGATTAATGATACTGGTCAGTATCATCATTTGTTCAGCATTAGCCAGAACACCAGAAAATCAAACACCTGTGGCATTCAAAGTCCCTGGGGTTCCATGGATACCCGCTATTAGTATATTTATCAATGCATATCTAATGGTTAAATTATCGGGGGCTACGTGGATTAGATTCTTAGTTTGGATGATTATTGGTTTCGCAATCTACTTTGGTTATGGATACTGGCCCAGTAGAGAGAGAAAAAG-AAGAAGTAATTTGTTATAACCATTTTTTTAAAGCAACTATTCATAATATAGAAGCATTTTATCAATTCACAGAAGTAATAGAGTTTATTTTACATATTTTTTTTGATTATTTTAATTACTGTTACTAATATTCTTGCACATTTGTATGAATTTTTCTATCCAATATTTGATTCTCTTATGAAACAATACCCTATGAACAATTTGTTTTTATTTGAAGTTTAAACAACAAATGATTTTTACTTTGCACCAATTAAAATA] [+] EMBL CD078712 [CTTGTGGGTACTGTTGTATCAGGTGTTATTGGATGCATAATGGCAGCAGTATTCAGTTTACAAGATCTAGTTGATATGATGTCAATCGGAACACTTCTTGCTTATACTCTAGTGTCTGTTTCTGTGCTTCTTTTGAGAGGACAACAAATGTCCATTGGATATTGCCTTAATAACATTAAAGATTGTACAGAAGTATTGATGGACGATGAAAAATGGCCAGGTGGTAAATTATCCTTATCTGATGAAAAATTATATCCACTCAAGATTTTGAATAAAATGACAGACAATACACTTAGTAGTAATAAAGAACGATCGAATGGTTTTGATGAATATTCCGATCGTGATAAACTCTCTGTTTCCCCAAATAACATTGATAATCCAAGTTTATCAAAGGCCTTGAAACAAACAAACAATTCATCACTTACGGATAATATTCATCTCAACATTTCAAGTTACTTCCAAAGATGTTTCAAGCTTGAACCTGGTCTAGATAAACCATCTAAAACTACTGAATTAATCTATAAAATAAATAGTTACTTATTACTTTGCTTCATTTTTCTTGGNCATCTGGGTATATTACTGTTAGNNATAACTACCTG ] [+] EMBL CD083826 [ AGAAGTATTGATGGACGATGAAAAATGGCCAGGTGGTAAATTATCCTTATCTGATGAAAAATTATATCCACTCAAGATTTTGAATAAAATGACAGACAATACACTTAGTAGTAATAAAGAACGATCGAATGGTTTTGATGAATATTCCGATCGTGATAAACTCTCTGTTTCCCCAAATAACATTGATAATCCAAGTTTATCAAAGGCCTTGAAACAAACAAACAATTCATCACTTACGGATAATATTCATCTCAACATTTCAAGTTACTTCCAAAGATGTTTCAAGCTTGAACCTGGTCTAGATAAACCATCTAAAACTACTGAATTAATCTATAAAATAAATAGTTACTTATTACTTTGCTTCATTTTTCTTGGCAATCTGGGTATATTACTGTTAGATA AACTACCTGAAGAGGCAACAAAAAATATGATAGTCACGGTCCCAATATGGACGTTTGTTGGATTAATGATACTGGTCAGTATCATCATTTGTTCAGCATTAGCCAGAACACCAG ] [-] EMBL CD073175 [ CCTGAAGAGGCAACAAAAAATATGATAGTCACGGTCCCAATATGGACGTTTGTTGGATTAATGATACTGGTCAGTATCATCATTTGTTCAGCATTAGCCAGACAACCAGAAAATCAAACACCTGTGGCATTCAAAGTCCCTGGGGTTCCATGGATACCCGCTATTAGTATATTTATCAATGCATATCTAATGGTTAAATTATCGGGGGCTACGTGGATTAGATTCTTAGTTTGGATGATTATTGGTTTCGCAATCTACTTTGGTTATGGATACTGGCCCAGTAGAGAGAGAAAAAG AAGAAGTAATTTGTTATAACCATTTTTTTAAAGCAACTATTCATAATATAGAAGCATTTTATCAATTCACAGAAGTAATAGAGTTTATTTTACATATTTTTTTTGATTATTTTAATTACTGTTACTAATATTCTTGCACATTTGTATGAATTTTTCTATCCAATATTTGATTCTCTTATGAAACAATACCCTATGAACAATTTGTTTTTATTTGAAGTTTAAACAACAAATGATTTTTACTTTGCACCAATTAAAATA] [-] EMBL CD137891 [ TATTAGTATATTTATCAATGCATATCTAATGGTTAAATTATCGGGGGCTACGTGGATTAGATTCTTAGTTTGGATGATTATTGGTTTCGCAATCTACTTTGGTTATGGATACTGGCACAGTAGAGAGAGAAAAAGAAAGAAGTAATTTGTTATAACCATTTTCTTAAAGCAACTATTCATAATATAGAAGCATCTTATCAATTCACAGAAGTAATAGAGTTTATTTTACATATTTTTTTTGATTATTTTAATTACTGTTACTAATATTCTTGCACATTTGTATGAATTTTTCTATCCAATATTT ] consensusID : consensus_7328#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence [AATTTATTGATATTTTCATTCACGCGAGTATGAAGAGATTATTGAGGAGGGAGGGAATTCTTTAGATTTGAGAGGAGTTTCGCAATCTACTTTGGTTATGGATACTGGCNCAGTAGAGAGAGAAAAAGAAAGAAGTATTTTGTTATAACCATTTTCTTAAAGCAACTATTCATAATATAGAAGCATCTTATCAATTCACAGAAGTAATAGAGTTTATTTAACATATTTTTTTTGATTATTTTAATTACTGTTACTAATATTCTTGCACATTTGTATGAATTTTTCTATCCAATATTTGATTCTCTTATGAAACAATACCCTATGAACAATTTGTTTTTATTTGAAGTCTAAACAACAAATGATTTCTACTTTGCACCAATTAAAATATAAATCTATAAAATAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA] [-] EMBL AI977001 [AATTTATTGATATTTTCATTCACGCGAGTATGAAGAGATTATTGAGGAGGGAGGGAATTCTTTAGATTTGAGAGGAGTTTCGCAATCTACTTTGGTTATGGATACTGGCNCAGTAGAGAGAGAAAAAGAAAGAAGTATTTTGTTATAACCATTTTCTTAAAGCAACTATTCATAATATAGAAGCATCTTATCAATTCACAGAAGTAATAGAGTTTATTTAACATATTTTTTTTGATTATTTTAATTACTGTTACTAATATTCTTGCACATTTGTATGAATTTTTCTATCCAATATTTGATTCTCTTATGAAACAATACCCTATGAACAATTTGTTTTTATTTGAAGTCTAAACAACAAATGATTTCTACTTTGCACCAATTAAAATATAAATCTATAAAATAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7328#0 CTTGTGGGTACTGTTGTATCAGGTGTTATTGGATGCATAATGGCAGCAGTATTCAGTTTA 60 consensus_7328#1 ------------------------------------------------------------ consensus_7328#0 CAAGATCTAGTTGATATGATGTCAATCGGAACACTTCTTGCTTATACTCTAGTGTCTGTT 120 consensus_7328#1 ------------------------------------------------------------ consensus_7328#0 TCTGTGCTTCTTTTGAGAGGACAACAAATGTCCATTGGATATTGCCTTAATAACATTAAA 180 consensus_7328#1 ------------------------------------------------------------ consensus_7328#0 GATTGTACAGAAGTATTGATGGACGATGAAAAATGGCCAGGTGGTAAATTATCCTTATCT 240 consensus_7328#1 ------------------------------------------------------------ consensus_7328#0 GATGAAAAATTATATCCACTCAAGATTTTGAATAAAATGACAGACAATACACTTAGTAGT 300 consensus_7328#1 ------------------------------------------------------------ consensus_7328#0 AATAAAGAACGATCGAATGGTTTTGATGAATATTCCGATCGTGATAAACTCTCTGTTTCC 360 consensus_7328#1 ------------------------------------------------------------ consensus_7328#0 CCAAATAACATTGATAATCCAAGTTTATCAAAGGCCTTGAAACAAACAAACAATTCATCA 420 consensus_7328#1 ------------------------------------------------------------ consensus_7328#0 CTTACGGATAATATTCATCTCAACATTTCAAGTTACTTCCAAAGATGTTTCAAGCTTGAA 480 consensus_7328#1 ------------------------------------------------------------ consensus_7328#0 CCTGGTCTAGATAAACCATCTAAAACTACTGAATTAATCTATAAAATAAATAGTTACTTA 540 consensus_7328#1 ------------------------------------------------------------ consensus_7328#0 TTACTTTGCTTCATTTTTCTTGGNCATCTGGGTATATTACTGTTAGNNATAACTACCTGA 600 consensus_7328#1 ------------------------------------------------------------ consensus_7328#0 AGAGGCAACAAAAAATATGATAGTCACGGTCCCAATATGGACGTTTGTTGGATTAATGAT 660 consensus_7328#1 ------------------------------------------------------------ consensus_7328#0 ACTGGTCAGTATCATCATTTGTTCAGCATTAGCCAGAACACCAGAAAATCAAACACCTGT 720 consensus_7328#1 ------------------------------------------------------------ consensus_7328#0 GGCATTCAAAGTCCCTGGGGTTCCATGGATACCCGCTATTAGTATATTTATCAATGCATA 780 consensus_7328#1 --------------------------------AATTTATTGATATTTTCATTCACGCGAG 28 **** *** ** ** * ** consensus_7328#0 TCTAATGGTTAAATTATCGGGGGCTACGTGGATTAGATTCTTAGTTTGGATGATTATTGG 840 consensus_7328#1 T---ATGAAGAGATTATTGAGGAGGGAGGGAATT---CTTTAGATTTGAGAGG-----AG 77 * *** * ***** * ** * * *** * * **** * * consensus_7328#0 TTTCGCAATCTACTTTGGTTATGGATACTGGCCCAGTAGAGAGAGAAAAAGAA-GAAGTA 899 consensus_7328#1 TTTCGCAATCTACTTTGGTTATGGATACTGGCNCAGTAGAGAGAGAAAAAGAAAGAAGTA 137 ******************************** ******************** ****** consensus_7328#0 ATTTGTTATAACCATTTTTTTAAAGCAACTATTCATAATATAGAAGCATTTTATCAATTC 959 consensus_7328#1 TTTTGTTATAACCATTTTCTTAAAGCAACTATTCATAATATAGAAGCATCTTATCAATTC 197 ***************** ****************************** ********** consensus_7328#0 ACAGAAGTAATAGAGTTTATTTTACATATTTTTTTTGATTATTTTAATTACTGTTACTAA 1019 consensus_7328#1 ACAGAAGTAATAGAGTTTATTTAACATATTTTTTTTGATTATTTTAATTACTGTTACTAA 257 ********************** ************************************* consensus_7328#0 TATTCTTGCACATTTGTATGAATTTTTCTATCCAATATTTGATTCTCTTATGAAACAATA 1079 consensus_7328#1 TATTCTTGCACATTTGTATGAATTTTTCTATCCAATATTTGATTCTCTTATGAAACAATA 317 ************************************************************ consensus_7328#0 CCCTATGAACAATTTGTTTTTATTTGAAGTTTAAACAACAAATGATTTTTACTTTGCACC 1139 consensus_7328#1 CCCTATGAACAATTTGTTTTTATTTGAAGTCTAAACAACAAATGATTTCTACTTTGCACC 377 ****************************** ***************** *********** consensus_7328#0 AATTAAAATA-------------------------------------------------- 1149 consensus_7328#1 AATTAAAATATAAATCTATAAAATAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCA 437 ********** consensus_7328#0 --------------------- consensus_7328#1 GCTGCATTACCGTACTGCGTA 458 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||