These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7348#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 700 fasta sequence [GGACATAGTTTTAAAGCGAATGGTTTCTCAAAACCCGTTTTGGTACGATCAAAAGATGGTCTAAGACTTAAGGTCCCGCTGGACTCATTCTCTCACACAGATTTAACCAGGTTTATAGGTACTGGAAGTCCATAAAGGTCATCGGTTTTAGATCCTAGTACTCAGGTTGATGTCATCGATGTTCGTCAGCAAGTCGAGATACAAATGACACTCCAAGAACTGGTCGATCACTTTTCCTCACCTCGTCGACAGGTGCTGTTAAATATGCTGAGTCTGGAGTTTTCAAGAACCAGCCTTGCAAAGTTTGTACATCCTCCGCATGTCGTTTCGGAACTTAGTCTTGTCACAACCTGTTGGCCGGAAGATGACCCTAACGACCTTAAAGATATCGAATTTGTTGACGAGACTGCACCAACTGTCCAAAAATACTGTCTTTTAAGTATGAAAGGCAGTTATACTGACTTCCATATAGATCTCGGTGGATCGTCTGTTTGGTACCATGTCATGTGGGGCGAAAAGGTGTTTTACTTGATGCCGCCTACACCCGAGTTTGTTTCTGCTTATTGGCGATGGTGTATGAGCAGCAATCATAGGGCGACATTCTTCCCAGACTTTGTGGATAGTCTTCGGGAGCAAGGTANGCATTCGTCTGTGCATTGTGGGACACAGCTCTGAGTTACTTTTCTAGAATCGAATAGTA] [+] EMBL CD127103 [GGACATAGTTTTAAAGCGAATGGTTTCTCAAAACCCGTTTTGGTACGATCAAAAGATGGTCTAAGACTTAAGGTCCCGCTGGACTCATTCTCTCACACAGATTTAACCAGGTTTATAGGTACTGGAAGTCCATAAAGGTCATCGGTTTTAGATCCTAGTACTCAGGTTGATGTCATCGATGTTCGTCAGCAAGTCGAGATACAAATGACACTCCAAGAACTGGTCGATCACTTTTCCTCACCTCGTCGACAGGTGCTGTTAAATATGCTGAGTCTGGAGTTTTCAAGAACCAGCCTTGCAAAGTTTGTACATCCTCCGCATGTCGTTTCGGAACTTAGTCTTGTCACAACCTGTTGGCCGGAAGATGACCCTAACGACCTTAAAGATATCGAATTTGTTGACGAGACTGCACCAACTGTCCAAAAATACTGTCTTTTAAGTATGAAAGGCAGTTATACTGACTTCCATATAGATCTCGGTGGATCGTCTGTTTGGTACCATGTCATGTGGGGCGAAAAGGTGTTTTACTTGATGCCGCCTACACCCGAGTTTGTTTCTGCTTATTGGCGATGGTGTATGAGCAGCAATCATAGGGCGACATTCTTCCCAGACTTTGTGGATAGTCTTCGGGAGCAAGGTANGCATTCGTCTGTGCATTGTGGGACACAGCTCTGAGTTACTTTTCTAGAATCGAATAGTA] consensusID : consensus_7348#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence [TTGATAAATTAATGTCGGCGCTCTTCCACTTTGTTTAAGATTCCTAGATTCACCTTCTCAACCTTTTAATGGCTCTTTCTGGGTCGAAGGAGTTTGTCGATATGCTTCTAGCTCGTGAATTTACAAGTGCTGATGATCAGGTACTTATTATGAATGGTTGTGATGTTAGTGGACATAGTTTTAAAGCGAACGGTTTCTCAAAACCCGTTTTGGTACGATCAAAAGATGGTCTAAGACTTAAGGTCCCGCTGGACTCATTCTCTCACACAGATTTAACCAGGTTTATAGATCCTAGTACTCAGGTTGATGTCATCGATGTTCGTCAGCAAGTCGAGATACAAATGACACTCCAAGAACTGGTCGATCACTTTTCCTCACCTCGTCGACAGGTGCTGTTAAATATGCTGAGTCTGGAGTTTTCAAGAACCAGCCTTGCAAAGTTTGTACATCCTCCGCATGTCGTTTCGGAACTTAGTCTTGTCACAACCTGTTGGCCGGAAGATGACCCTAACGACCTTAAAGATATCGAATTTGTTGGCGAGACTGCA] [+] EMBL AI977547 [TTGATAAATTAATGTCGGCGCTCTTCCACTTTGTTTAAGATTCCTAGATTCACCTTCTCAACCTTTTAATGGCTCTTTCTGGGTCGAAGGAGTTTGTCGATATGCTTCTAGCTCGTGAATTTACAAGTGCTGATGATCAGGTACTTATTATGAATGGTTGTGATGTTAGTGGACATAGTTTTAAAGCGAACGGTTTCTCAAAACCCGTTTTGGTACGATCAAAAGATGGTCTAAGACTTAAGGTCCCGCTGGACTCATTCTCTCACACAGATTTAACCAGGTTTATAGATCCTAGTACTCAGGTTGATGTCATCGATGTTCGTCAGCAAGTCGAGATACAAATGACACTCCAAGAACTGGTCGATCACTTTTCCTCACCTCGTCGACAGGTGCTGTTAAATATGCTGAGTCTGGAGTTTTCAAGAACCAGCCTTGCAAAGTTTGTACATCCTCCGCATGTCGTTTCGGAACTTAGTCTTGTCACAACCTGTTGGCCGGAAGATGACCCTAACGACCTTAAAGATATCGAATTTGTTGGCGAGACTGCA] consensusID : consensus_7348#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 471 fasta sequence [AAAGATATCGAATTTGTTGGCGAGACTGCACCAACTGTCCAAAAATACTGTCTTTTAAGTATGAAAGGCAGTTATACTGACTTCCATATAGATTTCGGGGGATCGTCTGTTTGGTACCATGTCATGTGGGGCGAAAAGGTGTTTTACTTGATGCCGCCTACACCCGAGTTTGTTTCTGCTTATTGGCGATGGTGTATGAGCAGCAATCATAGGGCGACATTCTTCCCAGACTTTGTGGATAGTCTTCGGGAGCAAGCTCTGAGTTACTTTTCTAGAATCGAATAGTAACGTAAATAGACCTACAGTTTACTGCCTTCGTATTTTACCGGGCCAAACAATCTTCCTACCATCTGGTTGGATCCACGCTGTTTACACGCCTTCTGATTGTCTAGTTTTTGGAGGGAATTTCCTAAGTGGATTGCATGTATCTATGCAACTCAGAATTTATCGCATGGAACAAAAATGCAAAAC] [+] EMBL CD096811 [AAAGATATCGAATTTGTTGGCGAGACTGCACCAACTGTCCAAAAATACTGTCTTTTAAGTATGAAAGGCAGTTATACTGACTTCCATATAGATTTCGGGGGATCGTCTGTTTGGTACCATGTCATGTGGGGCGAAAAGGTGTTTTACTTGATGCCGCCTACACCCGAGTTTGTTTCTGCTTATTGGCGATGGTGTATGAGCAGCAATCATAGGGCGACATTCTTCCCAGACTTTGTGGATAGTCTTCGGGAGCAAGCTCTGAGTTACTTTTCTAGAATCGAATAGTAACGTAAATAGACCTACAGTTTACTGCCTTCGTATTTTACCGGGCCAAACAATCTTCCTACCATCTGGTTGGATCCACGCTGTTTACACGCCTTCTGATTGTCTAGTTTTTGGAGGGAATTTCCTAAGTGGATTGCATGTATCTATGCAACTCAGAATTTATCGCATGGAACAAAAATGCAAAAC] [+] EMBL CD096812 [AAAGATATCGAATTTGTTGGCGAGACTGCACCAACTGTCCAAAAATACTGTCTTTTAAGTATGAAAGGCAGCTATACTGACTTCCATATAGATTTCGGTGG ] consensusID : consensus_7348#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence [CCATATAGATTTCGGTGGATCGTCTGTTTGGTACCATGTCATGTGGGGCGAAAAGGTGTTTTACTTGATGCCGCCTACACCCGAGTTTGTTTCTGCTTATTGGCGATGGTGTATGAGCAGCAATCGTAGGGCGACATTCTTCCCAGACTTTGTGGATAGTCTTCGGGAGCAAGAATCGAATAGTAACGTAAATAGACCTACAGTTTACTGCCTTCGTATTTTACCGGGCCAAACAATCTTCCTACCATCTGGTTGGATCCACGCTGTTTACACGCCTTCTGATTGTCTAGTTTTTGGAGGGAATTTCCTAAGTGGATTGCATGTATCTATGCAACTCAGAATTTATCGCATGGAACAAAAATGTAAAACTCCAATTAAATTTCTTTTCCCCAATTTTGAGAAAGTTCATTGGTTTTATA] [+] EMBL CD132770 [CCATATAGATTTCGGTGGATCGTCTGTTTGGTACCATGTCATGTGGGGCGAAAAGGTGTTTTACTTGATGCCGCCTACACCCGAGTTTGTTTCTGCTTATTGGCGATGGTGTATGAGCAGCAATCGTAGGGCGACATTCTTCCCAGACTTTGTGGATAGTCTTCGGGAGCAAGAATCGAATAGTAACGTAAATAGACCTACAGTTTACTGCCTTCGTATTTTACCGGGCCAAACAATCTTCCTACCATCTGGTTGGATCCACGCTGTTTACACGCCTTCTGATTGTCTAGTTTTTGGAGGGAATTTCCTAAGTGGATTGCATGTATCTATGCAACTCAGAATTTATCGCATGGAACAAAAATGTAAAACTCCAATTAAATTTCTTTTCCCCAATTTTGAGAAAGTTCATTGGTTTTATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7348#2 ------------------------------------------------------------ consensus_7348#3 ------------------------------------------------------------ consensus_7348#0 GGACATAGTTTTAAAGCGAATGGTTTCTCAAAACCCGTTTTGGTACGATCAAAAGATGGT 60 consensus_7348#1 ------------------------------------------------------------ consensus_7348#2 ------------------------------------------------------------ consensus_7348#3 ------------------------------------------------------------ consensus_7348#0 CTAAGACTTAAGGTCCCGCTGGACTCATTCTCTCACACAGATTTAACCAGGTTTATAGGT 120 consensus_7348#1 ------------------------------------------------------------ consensus_7348#2 ------------------------------------------------------------ consensus_7348#3 ------------------------------------------------------------ consensus_7348#0 ACTGGAAGTCCATAAAGGTCATCGGTTTTAGATCCTAGTACTCAGGTTGATGTCATCGAT 180 consensus_7348#1 ------------------------------------------------------------ consensus_7348#2 ------------------------------------------------------------ consensus_7348#3 ------------------------------------------------------------ consensus_7348#0 GTTCGTCAGCAAGTCGAGATACAAATGACACTCCAAGAACTGGTCGATCACTTTTCCTCA 240 consensus_7348#1 ------------------------------------------------------------ consensus_7348#2 ------------------------------------------------------------ consensus_7348#3 ------------------------------------------------------------ consensus_7348#0 CCTCGTCGACAGGTGCTGTTAAATATGCTGAGTCTGGAGTTTTCAAGAACCAGCCTTGCA 300 consensus_7348#1 ------------------------------------------------------------ consensus_7348#2 ------------------------------------------------------------ consensus_7348#3 ------------------------------------------------------------ consensus_7348#0 AAGTTTGTACATCCTCCGCATGTCGTTTCGGAACTTAGTCTTGTCACAACCTGTTGGCCG 360 consensus_7348#1 ------------------------------------------------------TTGATA 6 consensus_7348#2 ---------------------AAAGATATCGAATTTGTTGGCGAGACTGCACCAACTGTC 39 consensus_7348#3 ------------------------------------------------------------ consensus_7348#0 GAAGATGACCCTAACGACCTTAAAGATATCGAATTTGTTGACGAGACTGCACCAACTGTC 420 consensus_7348#1 AATTAATGTCGGCGCTCTTCCACTTTGTTTAAGATTCCTAGATTCACCTTCTCAACCTTT 66 consensus_7348#2 CAAAAATACTGTCTTTTAAGTATGAAAGGCAGTTATACTGACTTCCATATAGATTT---- 95 consensus_7348#3 --------------------------------------------CCATATAGATTT---- 12 consensus_7348#0 CAAAAATACTGTCTTTTAAGTATGAAAGGCAGTTATACTGACTTCCATATAGATCT---- 476 consensus_7348#1 TAATGGCTCTTTCTGGGTCGAAGGAGTTTGTCGATATGCTTCTAGCTCGTGAATTTACAA 126 * * ** * consensus_7348#2 ---CGGGGGATCGTCTGTTTGGTACCA-----TGTCATGTGGGGCGAAAAGGTGTTTTAC 147 consensus_7348#3 ---CGGTGGATCGTCTGTTTGGTACCA-----TGTCATGTGGGGCGAAAAGGTGTTTTAC 64 consensus_7348#0 ---CGGTGGATCGTCTGTTTGGTACCA-----TGTCATGTGGGGCGAAAAGGTGTTTTAC 528 consensus_7348#1 GTGCTGATGATCAGGTACTTATTATGAATGGTTGTGATGTTAGTGGACATAGTTTTAAAG 186 * * **** * ** ** * *** **** * ** * ** ** * consensus_7348#2 TTGATGCCGCCTACACCCGAGTTTGTTTCTGCTTATTGGCGATGGTGTATGAGCAGCAAT 207 consensus_7348#3 TTGATGCCGCCTACACCCGAGTTTGTTTCTGCTTATTGGCGATGGTGTATGAGCAGCAAT 124 consensus_7348#0 TTGATGCCGCCTACACCCGAGTTTGTTTCTGCTTATTGGCGATGGTGTATGAGCAGCAAT 588 consensus_7348#1 CGAACGGTTTCTCAAAACCCGTTTTGGTACGATCA--AAAGATGGTCTAAGACTTAAGGT 244 * * ** * * **** * * * * ****** ** ** * consensus_7348#2 CATAG-GGCGACATTCTTCC-CAGACTTTGTGGATAGTCTTCGGGAGCAAGCTCTGAGTT 265 consensus_7348#3 CGTAG-GGCGACATTCTTCC-CAGACTTTGTGGATAGTCTTCGGGAGCAAG--------- 173 consensus_7348#0 CATAG-GGCGACATTCTTCC-CAGACTTTGTGGATAGTCTTCGGGAGCAAGGT------- 639 consensus_7348#1 CCCGCTGGACTCATTCTCTCACACAGATTTAACCAGGTTTATAGATCCTAGTACTCAGGT 304 * ** ****** * ** * ** ** * * * ** consensus_7348#2 ACTTTTCTAGAATCGAATAGTAAC-GTAAATAGACCTACAGTTTACTGCCTTCGTATTTT 324 consensus_7348#3 ----------AATCGAATAGTAAC-GTAAATAGACCTACAGTTTACTGCCTTCGTATTTT 222 consensus_7348#0 ----------ANGCATTCGTCTGT-GCATTGTGGGACACAGCT--CTGAGTTACTTTTCT 686 consensus_7348#1 ----TGATGTCATCGATGTTCGTCAGCAAGTCGAGATACAAATGACACTCCAAGAACT-- 358 * * * * *** * * * consensus_7348#2 ACCGGGCCAAACAATCTTCCTACCATCTGGTTGGATCCACGCTGTTTACACGCCTTCTGA 384 consensus_7348#3 ACCGGGCCAAACAATCTTCCTACCATCTGGTTGGATCCACGCTGTTTACACGCCTTCTGA 282 consensus_7348#0 A--GAATCGAATAGTA-------------------------------------------- 700 consensus_7348#1 ----GGTCGATCACTTTTCCT--CACCTCGTCG-ACAGGTGCTGTTAA---ATATGCTGA 408 * * * * consensus_7348#2 TTGTCTAGTTTTTG-GAGGGAATTTCCTAAGTGGATTGCATGTATC-TATG-CAACTCAG 441 consensus_7348#3 TTGTCTAGTTTTTG-GAGGGAATTTCCTAAGTGGATTGCATGTATC-TATG-CAACTCAG 339 consensus_7348#0 ------------------------------------------------------------ consensus_7348#1 GTCTGGAGTTTTCAAGAACCAGCCTTGCAAAGTTTGTACATCCTCCGCATGTCGTTTCGG 468 consensus_7348#2 AATTTATCGCATGGAACAAAAATGCAAAAC------------------------------ 471 consensus_7348#3 AATTTATCGCATGGAACAAAAATGTAAAACTCCAATTAAATTTCTTTTCCCCAATTTTGA 399 consensus_7348#0 ------------------------------------------------------------ consensus_7348#1 AACTTAGT-CTTGTCACAACC-TGTTGGCCGGAAGATGACCCTAACGACCTTAAAGAT-A 525 consensus_7348#2 ----------------------- consensus_7348#3 GAAAGTTCATTGGTTTTATA--- 419 consensus_7348#0 ----------------------- consensus_7348#1 TCGAATTTGTTGGCGAGACTGCA 548 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||