cluster # 7351

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Schistosoma mansoni
cluster # 7351 cluster # 7351 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7351#0 length = 712 sequences # 1

consensus_7351#1 length = 491 sequences # 3
consensus_7351#2 length = 306 sequences # 1

consensusID : consensus_7351#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 712
fasta sequence

                              [CCTCCGGGCCAAAAATTCGGCACGAGGCGCGATAGGCTTGTCGAAGTTGAAAAAGAAGGAGGACGTCGTGGTAAAGCTCAAATCGCAACATTAGAAGCTCGTTTGACAACCTTAGATGAGCAACTCGAAGCAGAAAAACTAGAAAAGTTAAATGCAAACAAAAATTTCCGCAGAGCTGAAAAGAAATGCAAAGATCTAATCCTTCAAAATGATGATTTGAGACGATGTGCAGAAGCATTGAAAGAATCTTTTGAAAAAGCTCAATCTTCATGTAAACAAAATAAACGAGAAATAGCAGGTCTTGAAGAAGAGAACGCCAGAATCAATGCAAGATGTCGCCGCCTACAAAGAGATTTAGAAGAAGTGATGGAAGCTAAACGAACCATTGAACGAGATTTACAAAATCTTCGTAAACTTAGTCGAAGTACAACTCGTCCAAATCGTCAATTGCCGACTGTACTCTCAACGCTTTCACCTGATGTTACAGTAGATGAACATAATTCAGTAAATGAGTTGGATTCTATCACTAGTGATTTTGGAAGCAGTGGATCAGTTGTTACTAACAACACTAATAATAATGCTTCTACGCCTTCAGCTAATGAAAATTGAATTTTTTTTATTATCTACAAACTATTATTATTATCATCACANAATATCATTGGGGAANAGTCTTGTTTTACTTTCCTATTTTTAGCCTGTTCTGAGCAACTCA]

[+] EMBL CD082054             [CCTCCGGGCCAAAAATTCGGCACGAGGCGCGATAGGCTTGTCGAAGTTGAAAAAGAAGGAGGACGTCGTGGTAAAGCTCAAATCGCAACATTAGAAGCTCGTTTGACAACCTTAGATGAGCAACTCGAAGCAGAAAAACTAGAAAAGTTAAATGCAAACAAAAATTTCCGCAGAGCTGAAAAGAAATGCAAAGATCTAATCCTTCAAAATGATGATTTGAGACGATGTGCAGAAGCATTGAAAGAATCTTTTGAAAAAGCTCAATCTTCATGTAAACAAAATAAACGAGAAATAGCAGGTCTTGAAGAAGAGAACGCCAGAATCAATGCAAGATGTCGCCGCCTACAAAGAGATTTAGAAGAAGTGATGGAAGCTAAACGAACCATTGAACGAGATTTACAAAATCTTCGTAAACTTAGTCGAAGTACAACTCGTCCAAATCGTCAATTGCCGACTGTACTCTCAACGCTTTCACCTGATGTTACAGTAGATGAACATAATTCAGTAAATGAGTTGGATTCTATCACTAGTGATTTTGGAAGCAGTGGATCAGTTGTTACTAACAACACTAATAATAATGCTTCTACGCCTTCAGCTAATGAAAATTGAATTTTTTTTATTATCTACAAACTATTATTATTATCATCACANAATATCATTGGGGAANAGTCTTGTTTTACTTTCCTATTTTTAGCCTGTTCTGAGCAACTCA]




>consensus_7351#0
CCTCCGGGCCAAAAATTCGGCACGAGGCGCGATAGGCTTGTCGAAGTTGAAAAAGAAGGA
GGACGTCGTGGTAAAGCTCAAATCGCAACATTAGAAGCTCGTTTGACAACCTTAGATGAG
CAACTCGAAGCAGAAAAACTAGAAAAGTTAAATGCAAACAAAAATTTCCGCAGAGCTGAA
AAGAAATGCAAAGATCTAATCCTTCAAAATGATGATTTGAGACGATGTGCAGAAGCATTG
AAAGAATCTTTTGAAAAAGCTCAATCTTCATGTAAACAAAATAAACGAGAAATAGCAGGT
CTTGAAGAAGAGAACGCCAGAATCAATGCAAGATGTCGCCGCCTACAAAGAGATTTAGAA
GAAGTGATGGAAGCTAAACGAACCATTGAACGAGATTTACAAAATCTTCGTAAACTTAGT
CGAAGTACAACTCGTCCAAATCGTCAATTGCCGACTGTACTCTCAACGCTTTCACCTGAT
GTTACAGTAGATGAACATAATTCAGTAAATGAGTTGGATTCTATCACTAGTGATTTTGGA
AGCAGTGGATCAGTTGTTACTAACAACACTAATAATAATGCTTCTACGCCTTCAGCTAAT
GAAAATTGAATTTTTTTTATTATCTACAAACTATTATTATTATCATCACANAATATCATT
GGGGAANAGTCTTGTTTTACTTTCCTATTTTTAGCCTGTTCTGAGCAACTCA

consensusID : consensus_7351#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 491
fasta sequence

                              [CCCTGGCTCGTTTTCCTTCTCCGCCACCAGTGCCACCTGAAGACGTGCAAATTACATCCGCTAAAGGGACAGATGAGCCAATTAGTACCTTTGTGCGTGGTCGTGGCTCAGGTAGGGGAACACCTCGAGGAATGCGTGTAGGTAGAGGGCAGGGGCCACGAATAGCTCCGACAGAAGCACCTCAAGATTCAGTGAGTGATTTGAATGCTCCCAGAGGGTCAAGCTTTGAGCCTAGAGGACGTGGGAGAGGCAGAGGAAGAGGAATGTTTGGTCGAGGTCGTGGGATGCCATTCAATTCAAATCGAGGCTTCGAAAATCAGGATGGCCCAGATCGTCAGTAAGTGACTTTTACCTAAGTGCTTTTGTAATGATNGACTGTTATCCCTGTCCTATGCAATGCGGAAACACTTTCTGATGCATCACCAGGCTTTCACAACCCCGTTGATAATAGCCTTTTATTCTGTAGGGGTCCAAGACAATATGGTCGAAGA]

[+] EMBL CD164317             [CCCTGGCTCGTTTTCCTTCTCCGCCACCAGTGCCACCTGAAGACGTGCAAATTACATCCGCTAAAGGGACAGATGAGCCAATTAGTACCTTTGTGCGTGGTCGTGGCTCACGTAGGGGAACACCTTTATGAATGCGT                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD142237             [                                           CGTGCAAATTACATCCGCTAAAGGGACAGATGAGCCAATTAGTACCTTTGTGCGTGGTCGTGGCTCAGGTAGGGGAACACCTCGAGGAATGCGTGTAGGTAGAGGGCAGGGGCCACGAATAGCTCCGACAGAAGCACCTCAAGATTCAGTGAGTGATTTGAATGCTCCCAGAGGGTCAAGCTTTGAGCCTAGAGGACGTGGGAGAGGCAGAGGAAGAGGAATGTTTGGTCGAGGTCGTGGGATGCCATTCAATTCAAATCGAGGCTTCGAAAATCAGGATGGCCCAGATCGTCAGTAAGTGACTTTTACCTAAGTGCTTTTGTAATGATNGACTGTTATCCCTGTCCTATGCAATGCGGAAACAC                                                                                   ]
[+] EMBL BG931896             [                                                                                                   tTCGTGGCTCAGGTAGGGGAACACCTCGAGGAATGCGTGTAGGTAGAGGGCAGGGGCCACGAATAGCTCCGACAGAAGCACCTCAAGATTCAGTGAGTGATTTGAATGCTCCCAGAGGGTCAAGCTTTGAGCCTAGAGGACGCGGGAGAGGCAGAGGAAGAGGAATGTTTGGTCGAGGTCGTGGGATGCCATTCAATTCAAATCGAGACTTCGAAAATCAGGATGGCCCAGATCGTCAGTAAGTGACTTTTACCTAAGTGCTTTTGTAATGATGAACTGTTATCCCTGTCCTATGCAATGCGGAAACACTTTCTGATGCATCACCAGGCTTTCACAACCCCGTTGATAATAGCCTTTTATTCTGTAGGGGTCCAAGACAATATGGTCGAAGA]




>consensus_7351#1
CCCTGGCTCGTTTTCCTTCTCCGCCACCAGTGCCACCTGAAGACGTGCAAATTACATCCG
CTAAAGGGACAGATGAGCCAATTAGTACCTTTGTGCGTGGTCGTGGCTCAGGTAGGGGAA
CACCTCGAGGAATGCGTGTAGGTAGAGGGCAGGGGCCACGAATAGCTCCGACAGAAGCAC
CTCAAGATTCAGTGAGTGATTTGAATGCTCCCAGAGGGTCAAGCTTTGAGCCTAGAGGAC
GTGGGAGAGGCAGAGGAAGAGGAATGTTTGGTCGAGGTCGTGGGATGCCATTCAATTCAA
ATCGAGGCTTCGAAAATCAGGATGGCCCAGATCGTCAGTAAGTGACTTTTACCTAAGTGC
TTTTGTAATGATNGACTGTTATCCCTGTCCTATGCAATGCGGAAACACTTTCTGATGCAT
CACCAGGCTTTCACAACCCCGTTGATAATAGCCTTTTATTCTGTAGGGGTCCAAGACAAT
ATGGTCGAAGA

consensusID : consensus_7351#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 306
fasta sequence

                              [AATCACTATTTTATTCTATGANCAGATCACACTACCTCGAAAATCTTTAACGAAATTTATTGAACCATTAAAACCATCCAAGGGAGGTTCCATCCACGTAATTTACGTTGGTCCCATCCCCCCCGTCTCTTTGTCCGTGCTCGCTCTGATAAACCTTCCTCAACTTTGTTCTTTTTTGAATTGGACCAGTTAACCGGTGTGCAAAAATTCCATTAACTCTTGTGAGCTAATTTTTACCACTTTTATCTCTATCAAGGTGCTTCAAAAGTTGTGCAGCCTCTGTACGGTTGACCATTCTAATGCAAT]

[+] EMBL AA999477             [AATCACTATTTTATTCTATGANCAGATCACACTACCTCGAAAATCTTTAACGAAATTTATTGAACCATTAAAACCATCCAAGGGAGGTTCCATCCACGTAATTTACGTTGGTCCCATCCCCCCCGTCTCTTTGTCCGTGCTCGCTCTGATAAACCTTCCTCAACTTTGTTCTTTTTTGAATTGGACCAGTTAACCGGTGTGCAAAAATTCCATTAACTCTTGTGAGCTAATTTTTACCACTTTTATCTCTATCAAGGTGCTTCAAAAGTTGTGCAGCCTCTGTACGGTTGACCATTCTAATGCAAT]




>consensus_7351#2
AATCACTATTTTATTCTATGANCAGATCACACTACCTCGAAAATCTTTAACGAAATTTAT
TGAACCATTAAAACCATCCAAGGGAGGTTCCATCCACGTAATTTACGTTGGTCCCATCCC
CCCCGTCTCTTTGTCCGTGCTCGCTCTGATAAACCTTCCTCAACTTTGTTCTTTTTTGAA
TTGGACCAGTTAACCGGTGTGCAAAAATTCCATTAACTCTTGTGAGCTAATTTTTACCAC
TTTTATCTCTATCAAGGTGCTTCAAAAGTTGTGCAGCCTCTGTACGGTTGACCATTCTAA
TGCAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7351#0      CCTCCGGGCCAAAAATTCGGCACGAGGCGCGATAGGCTTGTCGAAGTTGAAAAAGAAGGA 60
consensus_7351#1      ------------------------------------------------------------
consensus_7351#2      ------------------------------------------------------------
                                                                                  

consensus_7351#0      GGACGTCGTGGTAAAGCTCAAATCGCAACATTAGAAGCTCGTTTGACAACCTTAGATGAG 120
consensus_7351#1      ----------CCCTGGCTCGTTTTCCTTC-TCCGCCACCAGT--GCCACCTGAAGACGTG 47
consensus_7351#2      ------------------------------------------------------------
                                                                                  

consensus_7351#0      CAACTCGAAGCAGAAAAACTAGAAAAGTTAAATGCAAACAAAAATTTCCGCAGAGCTGAA 180
consensus_7351#1      CAAATTACATCCGCTAAA--GGGACAGATGAGC-CAATTAGTACCTTTGTGCGTGGTCGT 104
consensus_7351#2      ------------------------------------------------------------
                                                                                  

consensus_7351#0      AAGAAATGCAAAGATCTAATCCTTCAAAATGATGATTTGAGACGATGTGCAGAAGCATTG 240
consensus_7351#1      GGCTCAGGTAGGGG---AACACCTCGAGG-AATGCGTGTAGGTAGAGGGCAGGGGCCACG 160
consensus_7351#2      ------------------------------------------------------------
                                                                                  

consensus_7351#0      AAAGAATCTTTTGAAAA-AGCTCAATCTTCATGTAAACAAAATAAACGAGAAATAGCAGG 299
consensus_7351#1      AATAGCTCCGACAGAAGCACCTCAAGATTCA-GTGAGTGATTTGAATGC----TCCCAGA 215
consensus_7351#2      ------------------------------------------------------------
                                                                                  

consensus_7351#0      TCTTGAAGAAGAGAACGCCAGAATCAATGCAAGATGTCGCCGCCTACAAAGAGATTTAGA 359
consensus_7351#1      GGGTCAAGCTTTGAGC-CTAGAGGACGTGGGAGAGGCAGAGGA--AGAGGAATGTTTGGT 272
consensus_7351#2      ---------AATCACTATTTTATTCTATGANCAGATCACACTACCTCGAAAATCTTTAAC 51
                                   *       *     **                      *  ***   

consensus_7351#0      AGAAGTGATGGAAGCTAAACGAACCATTGAACGAGATTTACAAAATCTTCGTAAACTTAG 419
consensus_7351#1      CGAGGTCGTGGGAT--------GCCATTCAATTCAA---ATCGAGGCTTCGAAAATCAGG 321
consensus_7351#2      GAAATTTATTGAACC-ATTAAAACCATCCAAGGGAG---GTTCCATCCACGTAATTTACG 107
                        *  *  * * *          ****  **               *  ** **     *

consensus_7351#0      TCGAAGTACAACTCGTCCAAATCGTCAATTGCCGACTGTACTCTCAACGCTTTCACCTGA 479
consensus_7351#1      ATG-----------GCCCAGATCGTCAGTAAGTGACTTTTACCTAAGTGCTTTTG--TAA 368
consensus_7351#2      TTG--GTCCCATCCCCCCCGTCTCTTTGTCCGTGCTCGCTCTGATAAACCTTCCT--CAA 163
                        *             **      *   *    *           *   ***       *

consensus_7351#0      TGTTACAGTAGATGAACATAATTCAG-TAAATGAGTTGGATTCTATCACTAGTGATTTTG 538
consensus_7351#1      TGATNGACTG--TTATCCCTGTCC---TATGCAATGCGGA----------AACACTTTCT 413
consensus_7351#2      CTTTGTTCTTTTTTGAATTGGACCAGTTAACCGGTGTGCAAA--------AATTCCATTA 215
                         *    *   *          *   **        * *          *      *  

consensus_7351#0      GAAGCAGTGGATCAGTTGTTACTAACAACACTAATAATAATGCTTCTACGCCTTCAGCTA 598
consensus_7351#1      GATGCATC--ACCAGGCTTTCACAACCCCGTTGATAATAGC-CTTTTAT-TCTGTAGGGG 469
consensus_7351#2      ACTCTTGTGAGCTAATTTTTACCACTTTTATCTCTATCAAG----GTGCTTCAAAAGTTG 271
                                   *    **   *          **  *       *    *   **   

consensus_7351#0      ATGAAAATTGAATTTTTTTTATTATCTACAAACTATTATTATTATCATCACANAATATCA 658
consensus_7351#1      TCCAAGAC--AATATGGTCGAAGA------------------------------------ 491
consensus_7351#2      -TGCAGCCTCTGTACGGTTGACCATTCTAATGCAAT------------------------ 306
                          *       *    *  *  *                                    

consensus_7351#0      TTGGGGAANAGTCTTGTTTTACTTTCCTATTTTTAGCCTGTTCTGAGCAACTCA 712
consensus_7351#1      ------------------------------------------------------
consensus_7351#2      ------------------------------------------------------