These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7352#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence [GAGCTCACCTAGTTCCCAGGAATGGGATACTCTTTTCTGGGCCTCGGAAACCCCGCTGGTTTGGAGGAAAACGTCTAACCTGACGCCGCTCTTCATACACTGGAAAAGCAACTTCGGATGAATTTTGCAAATTACTCTTTGCCCTAGCTTTTTTGAGGTCCTTGAACCAAGTTAGCTCTACAGGGTAACCAAACATTGTTTTGCCGTTGTGTCTGAAAATTAGATGAATGTAAAGCTTACCGACGAAGCATTTCGCTGGCAATCTCGTGGGACTTGAATCGTATGGCGACTGAGAATCTTTTCTTATCTTCTGAAGTAGAAAAAAACTCCACAGAGCACCTGGAATTTGTTTCATTACAGAAAAAGTCCTTCACTTTAGTTACGTCTGTCGTCCCTGGAAGCCCTCTAATAAATAGGGTG] [+] EMBL CD128762 [GAGCTCACCTAGTTCCCAGGAATGGGATACTCTTTTCTGGGCCTCGGAAACCCCGCTGGTTTGGAGGAAAACGTCTAACCTGACGCCGCTCTTCATACACTGGAAAAGCAACTTCGGATGAATTTTGCAAATTACTCTTTGCCCTAGCTTTTTTGAGGTCCTTGAACCAAGTTAGCTCTACAGGGTAACCAAACATTGTTTTGCCGTTGTGTCTGAAAATTAGATGAATGTAAAGCTTACCGACGAAGCATTTCGCTGGCAATCTCGTGGGACTTGAATCGTATGGCGACTGAGAATCTTTTCTTATCTTCTGAAGTAGAAAAAAACTCCACAGAGCACCTGGAATTTGTTTCATTACAGAAAAAGTCCTTCACTTTAGTTACGTCTGTCGTCCCTGGAAGCCCTCTAATAAATAGGGTG] consensusID : consensus_7352#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence [TGGTCCCGGCAGATTCACAGCAGATTCCACGAGCCCGCTGCTACTCGGGCAACCCAACAACCCACATGCCATTGTCTTCAACTACAGGACTCTCACCTTCTCCGGCAGGCCATTCCAAACCACTTCACCTAACAACAACACACGAGCACGATGATGGTAGTCACCGCCAATTGGGGCCCACAACACCGCACACACAACCCCTACCAGGTATCACATGCACACGGTTTAGCCTCATCCACGTTCGTTCGCCACTACTAGCAGAATCATTATTATTTTCTCCCCCTACGG] [+] EMBL CD111061 [TGGTCCCGGCAGATTCACAGCAGATTCCACGAGCCCGCTGCTACTCGGGCAACCCAACAACCCACATGCCATTGTCTTCAACTACAGGACTCTCACCTTCTCCGGCAGGCCATTCCAAACCACTTCACCTAACAACAACACACGAGCACGATGATGGTAGTCACCGCCAATTGGGGCCCACAACACCGCACACACAACCCCTACCAGGTATCACATGCACACGGTTTAGCCTCATCCACGTTCGTTCGCCACTACTAGCAGAATCATTATTATTTTCTCCCCCTACGG] consensusID : consensus_7352#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 256 fasta sequence [TACCTTCCGCTTCAAACGTCATCACGTTATCCACTCAGCTACTGAGTCCTGATAGCCACTTGCTTGTGCAATGGACGCGTTCTGGATTCCCCTGCTAGCCACTATCCATCTTTGCTTACAATGCTTGTGAAATAAGGCTATATCGAGGCAATACGCACAGTATGCACATATGCCGATAAGTGACTGACCAGTTGCAGTCCTAAACATCAATGGGAAGATTCAACAAGTAGTACCAAGTGAACTTACACTAGATCAA] [+] EMBL AI764834 [TACCTTCCGCTTCAAACGTCATCACGTTATCCACTCAGCTACTGAGTCCTGATAGCCACTTGCTTGTGCAATGGACGCGTTCTGGATTCCCCTGCTAGCCACTATCCATCTTTGCTTACAATGCTTGTGAAATAAGGCTATATCGAGGCAATACGCACAGTATGCACATATGCCGATAAGTGACTGACCAGTTGCAGTCCTAAACATCAATGGGAAGATTCAACAAGTAGTACCAAGTGAACTTACACTAGATCAA] consensusID : consensus_7352#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 244 fasta sequence [GAAGGAGCGTTTAGATCAAGTGTTAAANGCTCATTTAGGTGAANATATGGTCTGCGCAACAAACGCGAAGTGGGAGAGAAAAATTTCCTTCCCTTTTTTAACCAAGATACGTAATAGCCCGCGAGCTGAGCTGTTGACACTGGATGATAAAGACCCCAGACGACTTTTTGGAGGGTCCGCTCTGCTGAGACGCTTAGTTCGAGTTGGTGTACTTCCCGAAGATAGGATGAAACTGGATTTCGTT] [+] EMBL CD144566 [GAAGGAGCGTTTAGATCAAGTGTTAAANGCTCATTTAGGTGAANATATGGTCTGCGCAACAAACGCGAAGTGGGAGAGAAAAATTTCCTTCCCTTTTTTAACCAAGATACGTAATAGCCCGCGAGCTGAGCTGTTGACACTGGATGATAAAGACCCCAGACGACTTTTTGGAGGGTCCGCTCTGCTGAGACGCTTAGTTCGAGTTGGTGTACTTCCCGAAGATAGGATGAAACTGGATTTCGTT] consensusID : consensus_7352#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 148 fasta sequence [CAGAACTGGCACGGACCAGGGGAATCCGACTGTCTAATTAAAACAAAGCATTGCGATGTCCACTGATTGGTTTTGACGCAATGTGATTTCTGCCCAGGGCTCTGAATGTCAAAGGGAAGAAATTCAACCAAGCGCGGGTAAACGGCGG] [+] EMBL CD130529 [CAGAACTGGCACGGACCAGGGGAATCCGACTGTCTAATTAAAACAAAGCATTGCGATGTCCACTGATTGGTTTTGACGCAATGTGATTTCTGCCCAGGGCTCTGAATGTCAAAGGGAAGAAATTCAACCAAGCGCGGGTAAACGGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7352#0 GAGCTCACCTAGTTCCCAGGAATGGGATACTCTTTTCTGGGCCTCGGAAACCCCGCTGGT 60 consensus_7352#4 ------------------------------------------------------------ consensus_7352#2 ------------------------------------------------------------ consensus_7352#1 ------------------------------------------------------------ consensus_7352#3 ------------------------------------------------------------ consensus_7352#0 TTGGAGGAAAACGTCTAACCTGACGCCGCTCTTCATACACTGGAAAAGCAACTTCGGATG 120 consensus_7352#4 ------------------------------------------------------------ consensus_7352#2 ------------------------------------------------------------ consensus_7352#1 -------------------------------------------------TGGTCCCGGCA 11 consensus_7352#3 ------------------------------------------------------------ consensus_7352#0 AATTTTGCAAATTACTCTTTGCCCTAGCTTTTTTGAGGTCCTTGAACCAAGTTAGCTCTA 180 consensus_7352#4 ------------------------------------------------------------ consensus_7352#2 ---------------------------TACCTTCCGCTTCAAACGTCATCACGTTATCCA 33 consensus_7352#1 GATTCACAGCAGATTCCACGAGCCCGCTGCTACTCGGGCAACCCAACAACCCACATGCCA 71 consensus_7352#3 ----------------------GAAGGAGCGTTTAGATCAAGTGTTAAANGCTCATTTAG 38 consensus_7352#0 CAGGGTAACCAA-ACATTGTTTTGCCGTTGTGTCTGAAAATTAGATGAATGTAAAGCTTA 239 consensus_7352#4 ----------------CAGAACTGGCACGGACCAGGGGAATCCGAC---TGTCTAATTAA 41 consensus_7352#2 CTCAGCTACTGA-GTCCTGA-TAGCCACTTGCTTGTGCAAT-GGACGCGTTCTGGATTCC 90 consensus_7352#1 TT--GTCTTCAA-CTACAGGACTCTCACCTTCTCCGGCAGGCCATTCCAAACCACTTCAC 128 consensus_7352#3 GTGAANATATGGTCTGCGCAACAAACGCGAAGTGGGAGAGAAAAATTTCCTTCCCTTTTT 98 * * consensus_7352#0 CCGACGAAGCATTTCGCTGGCAATCTCGTGGGACTTGAATCGTATGGCGACTGAGAAT-C 298 consensus_7352#4 --AACAAAGCATTGCGATGTCCA-CTGATTGGTTTTGA--CGCAATGTGATTTCTGCC-C 95 consensus_7352#2 CCTGCTAGCCACTATCCATCTTTGCTTACAATGCTTGTGAAATAAGGCTATATCGAGG-C 149 consensus_7352#1 CTAACAA--CAACACACGAGCACGATGATGGTAGTCACCGCCAATTGGGGCCCACAACAC 186 consensus_7352#3 TAACCAAGATA-CGTAATAGCCCGCGAGCTGAGCTGTTGACACTGGATGATAAAGACC-C 156 * * * * * consensus_7352#0 TTTTCTTATCTTCT-GAAGTAGAAAAAAACTCCACAGAGCACCTGGAATTTGTTTCATTA 357 consensus_7352#4 AGGGCTCTGAATGT-CAAA-GGGAAGAAATTCAACCAAGCGCGGGTAAACGGCGG----- 148 consensus_7352#2 AATACGCACAGTATGCACATATGCCGATAAGTGACTGACCAGTTGCAGTCCTAAACATCA 209 consensus_7352#1 CGCACACACAACCCCTACCAGGTATCACATGCACACGGTTTAGCCTCATCCACGTTCGTT 246 consensus_7352#3 CAGACG-ACTTTTTGGAGGGTCCGCTCTGCTGAGACGCTTAGTTCGAGTTGGTGTACTTC 215 * * consensus_7352#0 CAGAAAAAGTCCTTCACTTTAGTTACGTCTGTCGTCCCTGGAAGCCCTCTAATAAATAGG 417 consensus_7352#4 ------------------------------------------------------------ consensus_7352#2 ATGGGAAGATTCAACAAGTAGTACCAAGTGAACTTACACTAGATCAA------------- 256 consensus_7352#1 CGCCACTACTAGCAGAATCATTATTATTTTCTCCCCCTACGG------------------ 288 consensus_7352#3 CCGAAGATAGGATGAAACTGGATTTCGTT------------------------------- 244 consensus_7352#0 GTG 420 consensus_7352#4 --- consensus_7352#2 --- consensus_7352#1 --- consensus_7352#3 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||