These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7355#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 661 fasta sequence [GAAGTTAGATTCTTGATATGTCGCGTAATACTTGAGTCCTCGAACGCTAGAACCCTTCCAAGTCGCAAAATCATAAGACAGAAGTCAAATAGAAGGAATGTTATTCCAAACAGTGTCAACTATGGTACAGAACTGTCAGGTATTTATAGTTTTTAGTAGAAACGAAATTATCATTAAAGTTATCCAATCTGCACACAGGAGGTTATTAGCGT-TCTTCAA-TAGGGAAAGCTACACTTAGTGATTCTAAAATATTTTTCCAGAAACTGATTGGATGAAATATGTTCGGCTCATTCTGGGCTTCTTAGAGCTTCCTCAACTTCACCAGTGAACCGTACTCGCATTTACACTTCAATTCCCACGATCTCCGGTCCGTGTACATCGCCTCCATTATTCATTGTCCTCCTTCACTCTACAACCGTACAATACTTCCCTCAGTCATTCCTTCCTCCACAACGAACGTCAACACTAACACCAACACCTCTTTACTAGCACAATGTGACTACTACGACTACACAACCGATGGATGACAACGACAACCACTAACACAATTCAATCAGTCAACCAACACGCTCAATACCCACTAACACATTTACACTTCAATTCCCACGATCTCCGGTCCCCGCTCACCCGCCACTTCAATTCCCACGATCTCCGGTCCGTG] [+] EMBL CD097752 [GAAGTTAGATTCTTGATATGTCGCGTAATACTTGAGTCCTCGAACGCTAGAACCCTTCCAAGTCGCAAAATCATAAGACAGAAGTCAAATAGAAGGAATGTTATTCCAAACAGTGTCAACTATGGTACAGAACTGTCAGGTATTTATAGTTTTTAGTAGAAACGAAATTATCATTAAAGTTATCCAATCTGCACACAGGAGGTTATTAGCGT TCTTCAA TAGGGAAAGCTACACTTAGTGATTCTAAAATATTCTTCCAGAAACTGATTGGATGGAATCTGT ] [+] EMBL CD060376 [ CAGGAGGTTATTAGCGTGTCTTCAAGTAGGGAAAGCTACACTTAGTGATTCTAAAATATTTTTCCAGAAACTGATTGGATGAAATATGTTCGGCTCATTCTGGGCTTCTTAGAGCTTCCTCAACTTCACCAGTGAACCGTACTCGCATTTACACTTCAATTCCCACGATCTCCGGTCCGTGTACATCGCCTCCATTATTCATTGTCCTCCTTCACTCTACAACCGTACAATACTTCCCTCAGTCATTCCTTCC ] [+] EMBL CD060379 [ CACTTAGTGATTCTAAAATATTTTTCCAGAAACTGA TGGATGAAATATGTTCGGCTCATTCTGGGCTTCTTAGAGCTTCCTCAACTTCACCAGTGAACCGTACTCGCATTTACACTTCAATTCCCACGATCTCCGGTCCGTGTACATCGCCTCCATTATTCATTGTCCTCCTTCACTCTACAACCGTACAATACTTCCCTCAGTCATTCCTTCCTC ] [-] EMBL CD169998 [ GTCCGTGTACATCGCCTNCATTATTCATTGTCCTCCTTCACTCTACAACTGTACAATACTTCCCTCAGTCATTCCTTCCGACACAACGAACGTCAACACTAACACCAACACCTCTTTACTAGCACAATGTGACTACTACGACTACACAACCGATGGATGACAACGACAACCACTAACACAATTCAATCAGTCAACCAACACGCTCAATACCCACTAACACATTTACACTTCAATTCCCACGATCTCCGGTCCCCGCTCACCCGCCACTTCAATTCCCACGATCTCCGGTCCGTG] consensusID : consensus_7355#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence [CAACGAACGTCAACACTAACACCAACACCTCTTTACTAGCACAATGTGACTACTACGACTACACAACCGATGGATGACAACGACAACCACTAACACAATTCAATCAGTCAACCAACACGCTCAATACCCACTAACACATTTACACTTCAATTCCCACGATCTCCGGTCCGTGTACATCGCCTCCTGATCTCTCAGTCGTCACCGTCTATCGCTCCATTCCACAACAAGTTCAGTTCCCGGTTGATTACTCAACTCCTCATCCCATCGCCATCCGGCACTCACCAACACATTCATTCACCCACACGCTTGCTTGCTCGGTCACGCACCCACTAAGCAAATATCT] [-] EMBL CD135941 [CAACGAACGTCAACACTAACACCAACACCTCTTTACTAGCACAATGTGACTACTACGACTACACAACCGATGGATGACAACGACAACCACTAACACAATTCAATCAGTCAACCAACACGCTCAATACCCACTAACACATTTACACTTCAATTCCCACGATCTCCGGTCCGTGTACATCGCCTCCTGATCTCTCAGTCGTCACCGTCTATCGCTCCATTCCACAACAAGTTCAGTTCCCGGTTGATTACTCAACTCCTCATCCCATCGCCATCCGGCACTCACCAACACATTCATTCACCCACACGCTTGCTTGCTCGGTCACGCACCCACTAAGCAAATATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7355#0 GAAGTTAGATTCTTGATATGTCGCGTAATACTTGAGTCCTCGAACGCTAGAACCCTTCCA 60 consensus_7355#1 ------------------------------------------------------------ consensus_7355#0 AGTCGCAAAATCATAAGACAGAAGTCAAATAGAAGGAATGTTATTCCAAACAGTGTCAAC 120 consensus_7355#1 ------------------------------------------------------------ consensus_7355#0 TATGGTACAGAACTGTCAGGTATTTATAGTTTTTAGTAGAAACGAAATTATCATTAAAGT 180 consensus_7355#1 ------------------------------------------------------------ consensus_7355#0 TATCCAATCTGCACACAGGAGGTTATTAGCGTTCTTCAATAGGGAAAGCTACACTTAGTG 240 consensus_7355#1 ------------------------------------------------------------ consensus_7355#0 ATTCTAAAATATTTTTCCAGAAACTGATTGGATGAAATATGTTCGGCTCATTCTGGGCTT 300 consensus_7355#1 ------------------------------------------------------------ consensus_7355#0 CTTAGAGCTTCCTCAACTTCACCAGTGAACCGTACTCGCATTTACACTTCAATTCCCACG 360 consensus_7355#1 ------------------------------------------------------------ consensus_7355#0 ATCTCCGGTCCGTGTACATCGCCTCCATTATTCATTGTCCTCCTTCACTCTACAACCGTA 420 consensus_7355#1 ------------------------------------------------------------ consensus_7355#0 CAATACTTCCCTCAGTCATTCCTTCCTCCACAACGAACGTCAACACTAACACCAACACCT 480 consensus_7355#1 ------------------------------CAACGAACGTCAACACTAACACCAACACCT 30 ****************************** consensus_7355#0 CTTTACTAGCACAATGTGACTACTACGACTACACAACCGATGGATGACAACGACAACCAC 540 consensus_7355#1 CTTTACTAGCACAATGTGACTACTACGACTACACAACCGATGGATGACAACGACAACCAC 90 ************************************************************ consensus_7355#0 TAACACAATTCAATCAGTCAACCAACACGCTCAATACCCACTAACACATTTACACTTCAA 600 consensus_7355#1 TAACACAATTCAATCAGTCAACCAACACGCTCAATACCCACTAACACATTTACACTTCAA 150 ************************************************************ consensus_7355#0 TTCCCACGATCTCCGGTCCCCGCTCACCCGCCACT------TCAATTCCCACGATCT-CC 653 consensus_7355#1 TTCCCACGATCTCCGGTCCGTGTACATCGCCTCCTGATCTCTCAGTCGTCACCGTCTATC 210 ******************* * ** * * ** *** * *** *** * consensus_7355#0 GGTCCGTG---------------------------------------------------- 661 consensus_7355#1 GCTCCATTCCACAACAAGTTCAGTTCCCGGTTGATTACTCAACTCCTCATCCCATCGCCA 270 * *** * consensus_7355#0 ------------------------------------------------------------ consensus_7355#1 TCCGGCACTCACCAACACATTCATTCACCCACACGCTTGCTTGCTCGGTCACGCACCCAC 330 consensus_7355#0 ------------- consensus_7355#1 TAAGCAAATATCT 343 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||