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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7383 cluster # 7383       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7383#0 length = 328 sequences # 1  
consensus_7383#1 length = 323 sequences # 4  

consensusID : consensus_7383#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 328
fasta sequence
                              [ACCAATTTATCCATAAATTCGACAAGCGAAATCGGAGAGTCACATGTACGGTCATACGAATGATTAGAGAACCAAGATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTACACCTTGTCTAGGTAAAAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGATATTTTGATTACTTTCATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATGGAGAATGAAGAAAATCGTGAATACATATCACAGCCAGAGAGATACTATCCAGTAAGCGGTTGAACTTAAAAAGCGTAGAATTGTTTGTATT]

[+] EMBL CD202350             [ACCAATTTATCCATAAATTCGACAAGCGAAATCGGAGAGTCACATGTACGGTCATACGAATGATTAGAGAACCAAGATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTACACCTTGTCTAGGTAAAAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGATATTTTGATTACTTTCATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATGGAGAATGAAGAAAATCGTGAATACATATCACAGCCAGAGAGATACTATCCAGTAAGCGGTTGAACTTAAAAAGCGTAGAATTGTTTGTATT]


>consensus_7383#0 ACCAATTTATCCATAAATTCGACAAGCGAAATCGGAGAGTCACATGTACGGTCATACGAA TGATTAGAGAACCAAGATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTA CACCTTGTCTAGGTAAAAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGA TATTTTGATTACTTTCATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATGGAG AATGAAGAAAATCGTGAATACATATCACAGCCAGAGAGATACTATCCAGTAAGCGGTTGA ACTTAAAAAGCGTAGAATTGTTTGTATT



consensusID : consensus_7383#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 323
fasta sequence
                              [AGTTAACATTCACCACTCTAGTGAATAATATGTAAGAACCCACTTAACAGGAGGAAAAAAACCGATTACATATTA-AACAATAAAAAAATCAATAAAATGTGATATTTCATTTACACCAAGATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTACACCTTGTCTAGGTAAAAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGATATTTTGATTACTTTCATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATGGAGAATGAAGAAAATCGTGAATACATATCACAGCCAGAGAGA]

[+] EMBL CD199746             [AGTTAACATTCACCACTCTAGTGAATAATATGTAAGAACCCACTTACCAGG GGAAAAACCCCGATTTC TTTTACATCAGT AAGAAATCATTAAATGGTGATTTTTCATTTACACCAAGATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTACACCTTGTCTAGGTAAAAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGATATTTTGATTACTTTCATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATAGAGAATGAAGAANATCGTGAATACATATCACAGCCAGAGAGA]
[+] EMBL CD199800             [AGTTAACATTCACCACTCTAGTGAATAATATGTAAGAACCCACTTAACAGGAGGAAAAAAACCGATTACATATTA AACAATAAAAAAATCAATAAAATGTGATATTTCATTTACACCAAGATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTACACCTTGTCTAGGTAAAAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGATATTTTGATTACTTTCATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATGGAGAATGAAGAAAATCGTGAATACATATCACAGCCAGAG   ]
[-] EMBL CD199721             [ GTTAACATTCACCACTCTAGTGAATAATATGTAAGAACCCACTTAACAGGAGGAAAAAAACCGATTACATATTA AACAATAAAAAAATCAATAAAATGTGATATTTCATTTACACCAAGATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTACACCTTGTCTAGGTAAAAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGATATTTTGATTACTTTCATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATGGAGAATGAAGAAAATCGTGAATATATATCACAGCCAGAGA  ]
[-] EMBL CD199634             [ GTTAACATTCACCACTCTAGTGAATAATATGTAAGAACCCACTTAACAGGAGGAAAAAAACCGATTACATATTA AACAATAAAAAAATCAATAAAATGTGATATTTCATTTACACCAAGATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTACACCTTGTCTAGGTAAAAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGATATTTTGATTACTTTCATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATGGAGAATGAAGAAAATCGTGAATACATATCACAGCCAGAGA  ]


>consensus_7383#1 AGTTAACATTCACCACTCTAGTGAATAATATGTAAGAACCCACTTAACAGGAGGAAAAAA ACCGATTACATATTAAACAATAAAAAAATCAATAAAATGTGATATTTCATTTACACCAAG ATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTACACCTTGTCTAGGTAA AAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGATATTTTGATTACTTTC ATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATGGAGAATGAAGAAAATCGTG AATACATATCACAGCCAGAGAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7383#0      -------------------------------------ACCAATTTATCCATAAATTCGAC 23
consensus_7383#1      AGTTAACATTCACCACTCTAGTGAATAATATGTAAGAACCCACTTAAC-AGGAGGAAAAA 59
                                                           *** * *** * *  *     * 

consensus_7383#0      AAGCGAA-----ATCGGAGAGTCACATGTACGGTCATACGAATGATTAGA---GAACCAA 75
consensus_7383#1      AACCGATTACATATTAAACAATAAAAAAATCAATAAAATGTGATATTTCATTTACACCAA 119
                      ** ***      **   * * * * *    *  * * * *    ***  *     *****

consensus_7383#0      GATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTACACCTTGTCTAGGTA 135
consensus_7383#1      GATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTACACCTTGTCTAGGTA 179
                      ************************************************************

consensus_7383#0      AAAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGATATTTTGATTACTTT 195
consensus_7383#1      AAAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGATATTTTGATTACTTT 239
                      ************************************************************

consensus_7383#0      CATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATGGAGAATGAAGAAAATCGT 255
consensus_7383#1      CATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATGGAGAATGAAGAAAATCGT 299
                      ************************************************************

consensus_7383#0      GAATACATATCACAGCCAGAGAGATACTATCCAGTAAGCGGTTGAACTTAAAAAGCGTAG 315
consensus_7383#1      GAATACATATCACAGCCAGAGAGA------------------------------------ 323
                      ************************                                    

consensus_7383#0      AATTGTTTGTATT 328
consensus_7383#1      -------------
                                   




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)