These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7383#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 328 fasta sequence [ACCAATTTATCCATAAATTCGACAAGCGAAATCGGAGAGTCACATGTACGGTCATACGAATGATTAGAGAACCAAGATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTACACCTTGTCTAGGTAAAAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGATATTTTGATTACTTTCATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATGGAGAATGAAGAAAATCGTGAATACATATCACAGCCAGAGAGATACTATCCAGTAAGCGGTTGAACTTAAAAAGCGTAGAATTGTTTGTATT] [+] EMBL CD202350 [ACCAATTTATCCATAAATTCGACAAGCGAAATCGGAGAGTCACATGTACGGTCATACGAATGATTAGAGAACCAAGATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTACACCTTGTCTAGGTAAAAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGATATTTTGATTACTTTCATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATGGAGAATGAAGAAAATCGTGAATACATATCACAGCCAGAGAGATACTATCCAGTAAGCGGTTGAACTTAAAAAGCGTAGAATTGTTTGTATT] consensusID : consensus_7383#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 323 fasta sequence [AGTTAACATTCACCACTCTAGTGAATAATATGTAAGAACCCACTTAACAGGAGGAAAAAAACCGATTACATATTA-AACAATAAAAAAATCAATAAAATGTGATATTTCATTTACACCAAGATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTACACCTTGTCTAGGTAAAAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGATATTTTGATTACTTTCATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATGGAGAATGAAGAAAATCGTGAATACATATCACAGCCAGAGAGA] [+] EMBL CD199746 [AGTTAACATTCACCACTCTAGTGAATAATATGTAAGAACCCACTTACCAGG GGAAAAACCCCGATTTC TTTTACATCAGT AAGAAATCATTAAATGGTGATTTTTCATTTACACCAAGATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTACACCTTGTCTAGGTAAAAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGATATTTTGATTACTTTCATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATAGAGAATGAAGAANATCGTGAATACATATCACAGCCAGAGAGA] [+] EMBL CD199800 [AGTTAACATTCACCACTCTAGTGAATAATATGTAAGAACCCACTTAACAGGAGGAAAAAAACCGATTACATATTA AACAATAAAAAAATCAATAAAATGTGATATTTCATTTACACCAAGATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTACACCTTGTCTAGGTAAAAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGATATTTTGATTACTTTCATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATGGAGAATGAAGAAAATCGTGAATACATATCACAGCCAGAG ] [-] EMBL CD199721 [ GTTAACATTCACCACTCTAGTGAATAATATGTAAGAACCCACTTAACAGGAGGAAAAAAACCGATTACATATTA AACAATAAAAAAATCAATAAAATGTGATATTTCATTTACACCAAGATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTACACCTTGTCTAGGTAAAAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGATATTTTGATTACTTTCATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATGGAGAATGAAGAAAATCGTGAATATATATCACAGCCAGAGA ] [-] EMBL CD199634 [ GTTAACATTCACCACTCTAGTGAATAATATGTAAGAACCCACTTAACAGGAGGAAAAAAACCGATTACATATTA AACAATAAAAAAATCAATAAAATGTGATATTTCATTTACACCAAGATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTACACCTTGTCTAGGTAAAAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGATATTTTGATTACTTTCATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATGGAGAATGAAGAAAATCGTGAATACATATCACAGCCAGAGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7383#0 -------------------------------------ACCAATTTATCCATAAATTCGAC 23 consensus_7383#1 AGTTAACATTCACCACTCTAGTGAATAATATGTAAGAACCCACTTAAC-AGGAGGAAAAA 59 *** * *** * * * * consensus_7383#0 AAGCGAA-----ATCGGAGAGTCACATGTACGGTCATACGAATGATTAGA---GAACCAA 75 consensus_7383#1 AACCGATTACATATTAAACAATAAAAAAATCAATAAAATGTGATATTTCATTTACACCAA 119 ** *** ** * * * * * * * * * * *** * ***** consensus_7383#0 GATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTACACCTTGTCTAGGTA 135 consensus_7383#1 GATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTACACCTTGTCTAGGTA 179 ************************************************************ consensus_7383#0 AAAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGATATTTTGATTACTTT 195 consensus_7383#1 AAAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGATATTTTGATTACTTT 239 ************************************************************ consensus_7383#0 CATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATGGAGAATGAAGAAAATCGT 255 consensus_7383#1 CATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATGGAGAATGAAGAAAATCGT 299 ************************************************************ consensus_7383#0 GAATACATATCACAGCCAGAGAGATACTATCCAGTAAGCGGTTGAACTTAAAAAGCGTAG 315 consensus_7383#1 GAATACATATCACAGCCAGAGAGA------------------------------------ 323 ************************ consensus_7383#0 AATTGTTTGTATT 328 consensus_7383#1 ------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||