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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7446#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 875 fasta sequence
[CCGGAGGCCTGNAATTCGGCACGAGGCGGCACGAGGGGCTTGTTCGATAATTTGACAGAGTCAATGATATTGCAAGAGGTAAAAACCATTGAGTTACTTCCAAACTGTACAATTGATAGTTTAAAACAGTGTGCTACACGTCTTGTAGAGCAAGCTCGAAGTGCGGCGTTCGCTCCTGATTTCGTTTCTCCATTCGCTAGTGAAGCACGTCGTTACGGTATAAACATTGCAGGTGGAGTTCCTGGTGACATAACCGTCATTCTAGGTTTAGTTATTGAAGAGAAATCATCACCAACTAGTAATCACGTAAAAGAAACACGATCCTCATTAAATCATCATCATCATCGTCGTCATCATCATCATTTACTTTTTCAACGGAATCGGAGTTTATCATGTTCTGAATTAAACTATAATAAATTTCATTCATTCACTTCTTCCTCTTCAACATTACCAACTTCTTCAAATAATACTACTACTGCTACTTCTTTTTCTTCAAAATTATTTCGAACTTATTCATGTACTTAATACCATTTTCTAGTTATATTTGAAAACAAAATCGTAACTAGATTCATCTTGTCCTACTGTCTACTAAGATGGTCAGATGCCGTTTAAGAATACTCAACTAGTTGACTATTTAGCCATATCTTTTTTCTCTTTCACACACACACACACTGCACATATATACTGTAAATAATTTTAACCAATGAAGTTAGCCAAACACTTGTTATCGCATTGTTCTCTTTTTTACAAGTGTTTTATCTTTTCACAGTAACGCGAATAATCCATATGTTTATTATGAAGAGGGAGACTATCGA-TTATGCGTAGAGATGATCCTGTATAATCGTAGAAATAATATTTATCATGCCTGTTTTATG]
[+] EMBL CD081556 [CCGGAGGCCTGNAATTCGGCACGAGGCGGCACGAGGGGCTTGTTCGATAATTTGACAGAGTCAATGATATTGCAAGAGGTAAAAACCATTGAGTTACTTCCAAACTGTACAATTGATAGTTTAAAACAGTGTGCTACACGTCTTGTAGAGCAAGCTCGAAGTGCGGCGTTCGCTCCTGATTTCGTTTCTCCATTCGCTAGTGAAGCACGTCGTTACGGTATAAACATTGCAGGTGGAGTTCCTGGTGACATAACCGTCATTCTAGGTTTAGTTATTGAAGAGAAATCATCACCAACTAGTAATCACGTAAAAGAAACACGATCCTCATTAAATCATCATCATCATCGTCGTCATCATCATCATTTACTTTTTCAACGGAATCGGAGTTTATCATGTTCTGAATTAAACTATAATAAATTTCATTCATTCACTTCTTCCTCTTCAACATTACCAACTTCTTCAAATAATACTACTACTGCTACTTCTTTTTCTTCAAAATTATTTCGAACTTATTCATGTACTTAATACCATTTTCTAGTTATATTTGAAAACAAAATCGTAACTAGATTCATCTTGTCCTACTGTCTACTAAGATGGTCAGATGCCGTTTAAGAATACTCAACTAGTTGACTATTTAGCCATATCTTTTTTCTCTTTCACACACACACACACTGCACATATATACTGTAAATAATTTTAACCAATGAAGTTAGCCAAACACTTGTTATCGCATTGTTCTCTTTTTTACAAGTGTTTTATCTTTTCACAGTAACGCGAATAATCCATATGTTTATTATGAAGAGGGAGACTATCGA TTATGCGTAGAGATGATCCTGTATAA ]
[-] EMBL CD075382 [ ACTCAACTAGTTGACTATTTAGCCATATCTTTTTTCTCTTTCACACACACACACACTGCACATATATACTGTAAATAATTTTAACCAATGAAGTTAGCCAAACACTTGTTATCGCATTGTTCTCTTTTTTACAAGTGTTTTATCTTTTCACAGTAAGGCGAATAATCCATATGTTTATTATGAAGA GGAGACTATCGATTTATGCGTAGAGATGATCCTGTATAATCGTAGAAATAATATTTATCATGCCTGTTTTATG]
consensusID : consensus_7446#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 720 fasta sequence
[TTTAATACACCATTCCAGTTGTCTTGTCCACCTACGCTTCACTCAAGACGTTTTCATTGTGATTTACCTAATCAAGCTGCCCAAACATCTGTAGAAGTCAAACCAGGTGACATAATTATCGTGGGCACAGATGGCTTGTTCGATAATTTGACAGAGTCAATGATATTGCAAGAGGTAAAAACCATTGAGTTACTTCCAAACTGTACAATTGATAGTTTAAAACAGTGTGCTACACGTCTTGTAGAGCAAGCTCGAAGTGCGGCGTTCGCTCCTGATTTCGTTTCTCCATTCGCTAGTGAAGCACGTCGTTACGGTATAAACATTGCAGGTGGAGTTCCTGGTGACATAACCGTCATTTTAGGTTTAGTTATTGAAGAGAAATCATCACCAACTAGTAGTCACGTAAAAGAAACACGATCCTCATTAAATCATCATCATCATCGTCGTCATCATCATCATCATCATTTACTTTTTCAACGGAATCGGAGTTTATCATGTTCTGAATTAAACTATAATAAATTTCATTCATTCACTTCTTCCTCTTCAACATTACCAACTTCTTCAAATAATACTACTACTGCTACTTCTTTTTCTTCAAAATTATTTCGAACTTATTCATGTACTTAATACCATTTTCTAGTTATATTTGAAAACAAAATCGTAACTAGATTCATCTTGTCCTACTGTCTACTAAGATGGTCAGATGCCGTTTAAGAATAC]
[+] EMBL CD162763 [TTTAATACACCATTCCAGTTGTCTTGTCCACCTACGCTTCACTCAAGACGTTTTCATTGTGATTTACCTAATCAAGCTGCCCAAACATCTGTAGAAGTCAAACCAGGTGACATAATTATCGTGGGCACAGATGGCTTGTTCGATAATTTGACAGAGTCAATGATATTGCAAGAGGTAAAAACCATTGAGTTACTTCCAAACTGTACAATTGATAGTTTAAAACAGTGTGCTACACGTCTTGTAGAGCAAGCTCGAAGTGCGGCGTTCGCTCCTGATTTCGTTTCTCCATTCGCTAGTGAAGCACGTCGTTACGGTATAAACATTGCA ]
[-] EMBL CD180784 [ TTAATACACCATTCCAGTTGTCTTGTCCACCTACGCTTCACTCAAGACGTTTTCATTGTGATTTACCTAATCAAGCTGCCCAAACATCTGTAGAAGTCAAACCAGGTGACATAATTATCGTGGGCACAGATGGCTTGTTCGATAATTTGACAGAGTCAATGATATTGCAAGAGGTAAAAACCATTGAGTTACTTCCAAACTGTACAATTGATAGTTTAAAACAGTGTGCTACACGTCTTGTAGAGCAAGCTCGAAGTGCGGCGTTCGCTCCTGATTTCGTTTCTCCATTCGCTAGTGAAGCACGTCGTTACGGTATAAACATTGCAG ]
[-] EMBL CD179622 [ CATAATTATCGTGGGCACAGATGGCTTGTTCGATAATTTGACAGAGTCAATGATATTGCAAGAGGTAAAAACCATTGAGTTACTTCCAAACTGTACAATTGATAGTTTAAAGCAGTGTGCTACACGTCTTGTAGAGCAAGCTCGAAGTGCGGCGTTCGCTCCTGATTTCGTTTCTCCATTCGCTAGTGAAGCACGTCGTTACGGTATAAACATTGCAGGTGGAGTTCCTGGTGACATAACCGTCATTTTAGGTTTAGTTATTGAAGAGAAATCATCACCAACTAGTAGTCACGTAAAAGAAACACGATCCTCATTAAATCATCATCATCATCGTCGTCATCATCATCATCATCATTTACTTTTTCAACGGAATCGGAGTTTATCATGTTCTGAATTAAACTATAATAAATTTCATTCATTCACTTCTTCCTCTTCAACATTACCAACTTCTTCAAATAATACTACTACTGCTACTTCTTTTTCTTCAAAATTATTTCGAACTTATTCATGTACTTAATACCATTTTCTAGTTATATTTGAAAACAAAATCGTAACTAGATTCATCTTGTCCTACTGTCTACTAAGATGGTCAGATGCCGTTTAAGAATAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7446#0 ------------------------------------------------------------
consensus_7446#1 TTTAATACACCATTCCAGTTGTCTTGTCCACCTACGCTTCACTCAAGACGTTTTCATTGT 60
consensus_7446#0 -------------------------------CCGGAGGCCTGNAATTCGGCACGA----- 24
consensus_7446#1 GATTTACCTAATCAAGCTGCCCAAACATCTGTAGAAGTCAAACCAGGTGACATAATTATC 120
* ** * * * ** *
consensus_7446#0 GGCGGCACGAGGGGCTTGTTCGATAATTTGACAGAGTCAATGATATTGCAAGAGGTAAAA 84
consensus_7446#1 GTGGGCACAGATGGCTTGTTCGATAATTTGACAGAGTCAATGATATTGCAAGAGGTAAAA 180
* ***** ************************************************
consensus_7446#0 ACCATTGAGTTACTTCCAAACTGTACAATTGATAGTTTAAAACAGTGTGCTACACGTCTT 144
consensus_7446#1 ACCATTGAGTTACTTCCAAACTGTACAATTGATAGTTTAAAACAGTGTGCTACACGTCTT 240
************************************************************
consensus_7446#0 GTAGAGCAAGCTCGAAGTGCGGCGTTCGCTCCTGATTTCGTTTCTCCATTCGCTAGTGAA 204
consensus_7446#1 GTAGAGCAAGCTCGAAGTGCGGCGTTCGCTCCTGATTTCGTTTCTCCATTCGCTAGTGAA 300
************************************************************
consensus_7446#0 GCACGTCGTTACGGTATAAACATTGCAGGTGGAGTTCCTGGTGACATAACCGTCATTCTA 264
consensus_7446#1 GCACGTCGTTACGGTATAAACATTGCAGGTGGAGTTCCTGGTGACATAACCGTCATTTTA 360
********************************************************* **
consensus_7446#0 GGTTTAGTTATTGAAGAGAAATCATCACCAACTAGTAATCACGTAAAAGAAACACGATCC 324
consensus_7446#1 GGTTTAGTTATTGAAGAGAAATCATCACCAACTAGTAGTCACGTAAAAGAAACACGATCC 420
************************************* **********************
consensus_7446#0 TCATTAAATCATCATCATCATCGTCGTCATCATCATCAT------TTACTTTTTCAACGG 378
consensus_7446#1 TCATTAAATCATCATCATCATCGTCGTCATCATCATCATCATCATTTACTTTTTCAACGG 480
*************************************** ***************
consensus_7446#0 AATCGGAGTTTATCATGTTCTGAATTAAACTATAATAAATTTCATTCATTCACTTCTTCC 438
consensus_7446#1 AATCGGAGTTTATCATGTTCTGAATTAAACTATAATAAATTTCATTCATTCACTTCTTCC 540
************************************************************
consensus_7446#0 TCTTCAACATTACCAACTTCTTCAAATAATACTACTACTGCTACTTCTTTTTCTTCAAAA 498
consensus_7446#1 TCTTCAACATTACCAACTTCTTCAAATAATACTACTACTGCTACTTCTTTTTCTTCAAAA 600
************************************************************
consensus_7446#0 TTATTTCGAACTTATTCATGTACTTAATACCATTTTCTAGTTATATTTGAAAACAAAATC 558
consensus_7446#1 TTATTTCGAACTTATTCATGTACTTAATACCATTTTCTAGTTATATTTGAAAACAAAATC 660
************************************************************
consensus_7446#0 GTAACTAGATTCATCTTGTCCTACTGTCTACTAAGATGGTCAGATGCCGTTTAAGAATAC 618
consensus_7446#1 GTAACTAGATTCATCTTGTCCTACTGTCTACTAAGATGGTCAGATGCCGTTTAAGAATAC 720
************************************************************
consensus_7446#0 TCAACTAGTTGACTATTTAGCCATATCTTTTTTCTCTTTCACACACACACACACTGCACA 678
consensus_7446#1 ------------------------------------------------------------
consensus_7446#0 TATATACTGTAAATAATTTTAACCAATGAAGTTAGCCAAACACTTGTTATCGCATTGTTC 738
consensus_7446#1 ------------------------------------------------------------
consensus_7446#0 TCTTTTTTACAAGTGTTTTATCTTTTCACAGTAACGCGAATAATCCATATGTTTATTATG 798
consensus_7446#1 ------------------------------------------------------------
consensus_7446#0 AAGAGGGAGACTATCGATTATGCGTAGAGATGATCCTGTATAATCGTAGAAATAATATTT 858
consensus_7446#1 ------------------------------------------------------------
consensus_7446#0 ATCATGCCTGTTTTATG 875
consensus_7446#1 -----------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||