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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7454#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 939 fasta sequence
[CAGGCCAANAATTTGGCACGAGGTGACTCTCAACACGCTCTGTCGAATTTAAACAACAGAATTTGTGAAATTTTGGATAATATTATTGTAAATCCGTCTATATTCGAATCTGGGCAATTGGATCATGTTCGTTCAGTTGGATCTTTCAAATTGAACACGTGGTTGAATGGTTCATGTATATCTGACTTGGCCTGCGTGTTTCGAACACTCCCAACTCTTGAAGCTGTACAAAACTTAGCAAGTTTTGTTCGTCGCCAGTTGACAAGCAATAATTCACCAGCTGAACATGTTAATTCTAAAGTTGAATTAGAAAGCTATGGATTTTCTGTTGCCTCAGCGGACTATATGGTGCAAGTGTTAATCACTACTACTCCAATGAATTTGAATCGAACAAGTCCTGATATACATATTAGTTTAACTGCTCAAAAGATTGCCTTGGCTTCAATTCGTCATTTAAGATGGGCAGAAGAAAATGCAACACATACTACTGTGAAGGTTTTAATTCGTATCTTAAAAGATTTTCGACGACGTTTTCGAGGTTTTGCTTATATGAATTCTTGGTTGATAGACTTGTTAGCTCATTATGTTGTAATGAATAATCCATCACGTCAACCCTTGCCACTTAATCATGCGTTCAGACGTGTATTCCATCTATTGGGCCAGCGGTTNTCTTCTTCCTAGTAGTACAGGTTTAATTGATCCTTGTGAACAGGAAATGTACGTCTTCACTCGTTAATGTCTCTTGCTGACAGGATGANATATNGTGACAGCTCAGTACTATTACGAATCTTATTTACGGAGGTACTCACACTATCACTCTAGTGATTGGATGCTGATCAGAGAACATATTAAGTCTCACAATCGATGATATCTGATTACTNAGTGCCCGACAGTGCATGCTCCACGATACAAATGGNAGTGAAGTGTAACGCATACAAT]
[+] EMBL CD080838 [CAGGCCAANAATTTGGCACGAGGTGACTCTCAACACGCTCTGTCGAATTTAAACAACAGAATTTGTGAAATTTTGGATAATATTATTGTAAATCCGTCTATATTCGAATCTGGGCAATTGGATCATGTTCGTTCAGTTGGATCTTTCAAATTGAACACGTGGTTGAATGGTTCATGTATATCTGACTTGGCCTGCGTGTTTCGAACACTCCCAACTCTTGAAGCTGTACAAAACTTAGCAAGTTTTGTTCGTCGCCAGTTGACAAGCAATAATTCACCAGCTGAACATGTTAATTCTAAAGTTGAATTAGAAAGCTATGGATTTTCTGTTGCCTCAGCGGACTATATGGTGCAAGTGTTAATCACTACTACTCCAATGAATTTGAATCGAACAAGTCCTGATATACATATTAGTTTAACTGCTCAAAAGATTGCCTTGGCTTCAATTCGTCATTTAAGATGGGCAGAAGAAAATGCAACACATACTACTGTGAAGGTTTTAATTCGTATCTTAAAAGATTTTCGACGACGTTTTCGAGGTTTTGCTTATATGAATTCTTGGTTGATAGACTTGTTAGCTCATTATGTTGTAATGAATAATCCATCACGTCAACCCTTGCCACTTAATCATGCGTTCAGACGTGTATTCCATCTATTGGGCCAGCGGTTNTCTTCTTCCTAGTAGTACAGGTTTAATTGATCCTTGTGAACAGGAAATGTACGTCTTCACTCGTTAATGTCTCTTGCTGACAGGATGANATATNGTGACAGCTCAGTACTATTACGAATCTTATTTACGGAGGTACTCACACTATCACTCTAGTGATTGGATGCTGATCAGAGAACATATTAAGTCTCACAATCGATGATATCTGATTACTNAGTGCCCGACAGTGCATGCTCCACGATACAAATGGNAGTGAAGTGTAACGCATACAAT]
consensusID : consensus_7454#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 568 fasta sequence
[AAGAGCGCCATATCGACGCAGTAACCCCTCACAGACCGGTCCCTTTACTCCACAATTCCCCTTGGATCTTGTTATGTTAGAACCGAATCTCATCATTCCTGCTGATGACCAAAAACTATTGCAATGTTTATTAGATCATCATGGGAAATTAACACCATCTCCTGATTCTCAACACGCTCTGTCGAATTTAAACAACAGAATTTGTGAAATTTTGGATAATATTATTGTAAATCCGTCTATATTCGAATCTGGGCAATTGGATCATGTTCGTTCAGTTGGATCTTTCAAATTGAACACGTGGTTGAATGGTTCGTGTATATCTGACTTGGCCTGCGTGTTTCGAACACTCCCAACTCTTGAAGCTGTACAAAACTTAGCAAGTTTTGTTCGTCGCCAGTTGACAAGCAATAATTCACCAGCTGAACATGTTAATTCTAAAGTTGAATTAGAAAGCTATGGATTTTCTGTTGCCTCAGGGGACTATATGGTGCAAGTGTTAATCACTACTACTCCAATGAATTTGAATCGAACAAGTCCTGATATACATATTAGTTTAACTGTGCAAAAG]
[-] EMBL CD114276 [AAGAGCGCCATATCGACGCAGTAACCCCTCACAGACCGGTCCCTTTACTCCACAATTCCCCTTGGATCTTGTTATGTTAGAACCGAATCTCATCATTCCTGCTGATGACCAAAAACTGTTGCAATGTTTATTAGATCATCATGGGAAATTAACACCATCTCCTGATTCTCAACACGCTCTGTCGAATTTAAACAACAGAATTTGTGAAATTTTGGATAATATTATTGTAAATCCGTCTATATTCGAATCTGGGCAATTGGATCATGTTCGTTCAGTTGGATCTTTCAAATTGAACACGTGGTTGAATGGTTCGTGTATATCTGACTTGGCCTGCGTGTTTCGAACACTCCCAACTCTTGAAGCTGTACAAAACTTAGCAAGTTTTGTTCGTCGCCAGTTGACAAGCAATAATTCACCAGCTGAACATGTTAATTCTAAAGTTGAATTAGAAAGCTATGGATTTTCTGTTGCCTCAGGGGACTATATGGTGCAAGTGTTAATCACTACTACTCCAATGAATTTGAATCGAACAAGTCCTGATATACATATTAGTTTAACTGTGCAAAAG]
[-] EMBL CD197200 [ ACGCAGTAACCCCTCACAGACCGGTCCCTTTACTCCACAATTCCCCTTGGATCTTGTTATGTTAGAACCGAATCTCATCATTCCTGCTGATGACCAAAAACTATTGCAATGTTTATTAGATCATCATGGGAAATTAACACCATCTCCTGATTCTCAACACGCTCTGTCGAATTTAAACAACAGAATTTGTGAAATTTTGGATAATATTATTGTAAATCCGTCTATATTCGAATCTGGGCAATTGGATCATGTTCGTTCAGTTGGATCTTTCAAATTGAACACGTGGTTGAATGGTTCATGTATATCTGACTTGGCCTGCGTGTTTCGAA ]
[-] EMBL CD155414 [ CCCTTTACTCCACAATTCCCCTTGGATCTTGTTATGTTAGAACCGAATCTCATCATTCCTGCTGATGACCAAAAACTATTGCAATGTTTATTAGATCATCATGGGAAATTAACACCATCTCCTGATTCTCAACACGCTCTGTCGAATTTAAACAACAGAATTTGTGAAATTTTGGATAATATTATTGTAAATCCGTCTATATTCGAATCTGGGCAATTGGATCATGTTCGTTCAGTTGGATCTTTCAAATTGAACACGTGGTTGAATGGTTCGTGTATATCTGACTTGGCCTGCGTGTTTCGAACACTCCCAACTCTTGAAGCTGTACAAAACTTAGCAAGTTTTG ]
[-] EMBL CD151648 [ GCTGATGACCAAAAACTATTGCAATGTTTATTAGATCATCATGGGAAATTAACACCATCTCTTGATTCTCAACACGCTCTGTCGAATTTAAACAACAGAATTTGTGAAATTTTGGATAATATTATTGTAAATCCGTCTATATTCGAATCTGGGCAATTGGATCATGTTCGTTCAGTTGGATCTTTCAAATTGAACACGTGGTTGAATGGTTCATGTATATCTGACTTGGCCTGCGTGTTTCGAACACTCCCAACTCTTGAAGCTGTACAAAACTTAGCAAGTTTTGTTCGTCGCCAGTTGACAAGCAATAATTCACCAGCTGAACATGTTAATTCTAAAGTTGAATTAGAAAGCTATGGATTTTCTGATGCCTCAGGGGACTATATGGTGCAAGTGTTAATCACTACTACTCCAATGAATTTGAATCGAACAAGTCCTGATATACATA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7454#0 ------------------------------------------------------------
consensus_7454#1 AAGAGCGCCATATCGACGCAGTAACCCCTCACAGACCGGTCCCTTTACTCCACAATTCCC 60
consensus_7454#0 ------------------------------------------------------------
consensus_7454#1 CTTGGATCTTGTTATGTTAGAACCGAATCTCATCATTCCTGCTGATGACCAAAAACTATT 120
consensus_7454#0 ----------------CAGGCCAANAATTTGGCACGAGGT---GACTCTCAACACGCTCT 41
consensus_7454#1 GCAATGTTTATTAGATCATCATGGGAAATTAACACCATCTCCTGATTCTCAACACGCTCT 180
** ** ** *** * * ** **************
consensus_7454#0 GTCGAATTTAAACAACAGAATTTGTGAAATTTTGGATAATATTATTGTAAATCCGTCTAT 101
consensus_7454#1 GTCGAATTTAAACAACAGAATTTGTGAAATTTTGGATAATATTATTGTAAATCCGTCTAT 240
************************************************************
consensus_7454#0 ATTCGAATCTGGGCAATTGGATCATGTTCGTTCAGTTGGATCTTTCAAATTGAACACGTG 161
consensus_7454#1 ATTCGAATCTGGGCAATTGGATCATGTTCGTTCAGTTGGATCTTTCAAATTGAACACGTG 300
************************************************************
consensus_7454#0 GTTGAATGGTTCATGTATATCTGACTTGGCCTGCGTGTTTCGAACACTCCCAACTCTTGA 221
consensus_7454#1 GTTGAATGGTTCGTGTATATCTGACTTGGCCTGCGTGTTTCGAACACTCCCAACTCTTGA 360
************ ***********************************************
consensus_7454#0 AGCTGTACAAAACTTAGCAAGTTTTGTTCGTCGCCAGTTGACAAGCAATAATTCACCAGC 281
consensus_7454#1 AGCTGTACAAAACTTAGCAAGTTTTGTTCGTCGCCAGTTGACAAGCAATAATTCACCAGC 420
************************************************************
consensus_7454#0 TGAACATGTTAATTCTAAAGTTGAATTAGAAAGCTATGGATTTTCTGTTGCCTCAGCGGA 341
consensus_7454#1 TGAACATGTTAATTCTAAAGTTGAATTAGAAAGCTATGGATTTTCTGTTGCCTCAGGGGA 480
******************************************************** ***
consensus_7454#0 CTATATGGTGCAAGTGTTAATCACTACTACTCCAATGAATTTGAATCGAACAAGTCCTGA 401
consensus_7454#1 CTATATGGTGCAAGTGTTAATCACTACTACTCCAATGAATTTGAATCGAACAAGTCCTGA 540
************************************************************
consensus_7454#0 TATACATATTAGTTTAACTGCTCAAAAGATTGCCTTGGCTTCAATTCGTCATTTAAGATG 461
consensus_7454#1 TATACATATTAGTTTAACTGTGCAAAAG-------------------------------- 568
******************** ******
consensus_7454#0 GGCAGAAGAAAATGCAACACATACTACTGTGAAGGTTTTAATTCGTATCTTAAAAGATTT 521
consensus_7454#1 ------------------------------------------------------------
consensus_7454#0 TCGACGACGTTTTCGAGGTTTTGCTTATATGAATTCTTGGTTGATAGACTTGTTAGCTCA 581
consensus_7454#1 ------------------------------------------------------------
consensus_7454#0 TTATGTTGTAATGAATAATCCATCACGTCAACCCTTGCCACTTAATCATGCGTTCAGACG 641
consensus_7454#1 ------------------------------------------------------------
consensus_7454#0 TGTATTCCATCTATTGGGCCAGCGGTTNTCTTCTTCCTAGTAGTACAGGTTTAATTGATC 701
consensus_7454#1 ------------------------------------------------------------
consensus_7454#0 CTTGTGAACAGGAAATGTACGTCTTCACTCGTTAATGTCTCTTGCTGACAGGATGANATA 761
consensus_7454#1 ------------------------------------------------------------
consensus_7454#0 TNGTGACAGCTCAGTACTATTACGAATCTTATTTACGGAGGTACTCACACTATCACTCTA 821
consensus_7454#1 ------------------------------------------------------------
consensus_7454#0 GTGATTGGATGCTGATCAGAGAACATATTAAGTCTCACAATCGATGATATCTGATTACTN 881
consensus_7454#1 ------------------------------------------------------------
consensus_7454#0 AGTGCCCGACAGTGCATGCTCCACGATACAAATGGNAGTGAAGTGTAACGCATACAAT 939
consensus_7454#1 ----------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||