These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7465#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 694 fasta sequence [TTAAAATTTTATACACATTATGTATACATATAGACAGAACAAAAATAAACTCGGTGATAACAAAACAATGAGTTCAAAGTTGGAGAAAATAACCCCGAACACAAGTTATTGATCATTGAAATAATGAAAATAGAAGAAAATAATGAAAGTACATGACTAAATTCAATTGAACTCAAAGGATAATTCTGTAGGAACATCTTGAAATAGATCGATACGGATGATGAATGATGATTGATATATGTAAATTTCGATCTTCTATAATAACATCAATTCTGTAGTTAGAAAATTATCTGCGCGATGTACCGCCAAAACCCGATGATATATGAGTTTCGGGTGAAGGAGTTCGTGAA-GACGATCATGTGTAAAATGTGTATTTGAAGAAGTATAATGTGAATCTGAAAAACCAGTTCAACTTCGAACAAATGATTCTTCTTCAGTATAGACTGGAGTAGTTCGTGAATAACCACTGCCAGGATTGGTATTTGATCTAGATCCCATAAAATAGCCTCCAAGAAATCCAGCACCTGCAGCTAGCCCATTAGATAACCATGAAGTAGACTGATCTTCTGATTTATTCCAATTCCATCGAGAACGTGACTGTGATGGACCCATAACATTTGATGTCCAACCGTATTCTGGAGGTGCTGATGACGCTTGACCTCTTCTTGTAGAATCGTCTTCATGATCATTGAAA] [+] EMBL CD076171 [TTAAAATTTTATACACATTATGTATACATATAGACAGAACAAAAATAAACTCGGTGATAACAAAACAATGAGTTCAAAGTTGGAGAAAATAACCCCGAACACAAGTTATTGATCATTGAAATAATGAAAATAGAAGAAAATAATGAAAGTACATGACTAAATTCAATTGAACTCAAAGGATAATTCTGTAGGAACATCTTGAAATAGATCGATACGGATGATGAATGATGATTGATATATGTAAATTTCGATCTTCTATAATAACATCAATTCTGTAGTTAGAAAATTATCTGCGCGATGTACCGCCAAAACCCGATGATATATGAGTTTCGGGTGAAGGAGTTCGTGAA GACGATCATGTGTAAAATGTGTATTTGAAGAAGTATAATGTGAATCTGAAAAACCAGTTCAACTTCGAACAAATGATTCTTCTTCAGTATAGACTGGAGTAGTTCGTGAATAACCACTGCCAGGATTGGTATTTGATCTAGATCCCATAAAATAGCCTCCAAGAAATCCAGCACCTGCAGCTAGCCCATTAGATAACCATGAAGTAGACTGATCTTCTGATTTATTCCAATTCCATCGAGAACGTGACTGTGATGGACCCATAACATTTGATGTCCAACC ] [+] EMBL CD073387 [TTAAAATTTTATACACATTATGTATACATATAGACAGAACAAAAATAAACTCGGTGATAACAAAACAATGAGTTCAAAGTTGGAGAAAATAACCCCGAACACAAGTTATTGATCATTGAAATAATGAAAATAGAAGAAAATAATGAAAGTACATGACTAAATTCAATTGAACTCAAAGGATAATTCTGTAGGAACATCTTGAAATAGATCGATACGGATGATGAATGATGATTGATATATGTAAATTTCGATCTTCTATAATAACATCAATTCTGTAGTTAGAAAATTATCTGCGCGATGTACCGCCAAAACCCGATGATATATGAGTTTCGGGTGAAGGAGTTCGTGAACGACGATCATGTGTAAAATGTGTATTTGAAGAAGTATAATGTGAATCTGAAAAACCAGTTCCACTTCGAACAAATGATTCTTCTTCAGTATAGACTGGAGTAGTTCGTGAATAACCACTGCCAGGATTGGTATTTGATCTAGATCCCATAAAATAGCCTCCAAGAAATCCAGCACCTGCAGCTAGCCCATTAGATAACCATGAAG ] [-] EMBL CD082573 [ TCATTGAAATAATGAGAATAGAAGAGAATAATGAAAGTACATGACTAGATTCAATTGAACTCAAAGGATAATTCTGTAGGAACATCTTGAAATAGATCGATACGGATGATGAATGATGATTGATATATGTAAATTTCGATCTTCTATAATAACATCAATTCTGTAGTTAGAAAATTATCTGCGCGATGTACCGCCAAAACCCGATGATATATGAGTTTCGGGTGAAGGAGTTCGTGAA GACGATCATGTGTAAAATGTGTATTTGAAGAAGTATAATGTGAATCTGAAAAACCAGTTCAACTTCGAACAAATGATTCTTCTTCAGTATAGACTGGAGTAGTTCGTGAATAACCACTGCCAGGATTGGTATTTGATCTAGATCCCATAAAATAGCCTCCAAGAAATCCAGCACCTGCAGCTAGCCCATTAGATAACCATGAAGTAGACTGATCTTCTGATTTATTCCAATTCCATCGAGAACGTGACTGTGATGGACCCATAACATTTGATGTCCAACCGTATTCTGGAGGTGCTGATGACGC ] [-] EMBL CD083625 [ GTGAATAACCACTGCCAGGATTGGTATTTGATCTAGATCCCATAAAATAGCCTCCAAGAAATCCAGCACCTGCAGCTAGCCCATTAGATAACCATGAAGTAGACTGATCTTCTGATTTATTCCAATTCCATCGAGAACGTGACTGTGATGGACCCATAACATTTGATGTCCAACCGTATTCTGGAGGTGCTGATGGAGCTTGACCTCTTCTTGTAGAATCGTCTTCATGATCATTGAAA] consensusID : consensus_7465#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence [GACTAAATTCAATGAAACTCAAAGGATAATTCTGTAGGAACATCTTGAAATAGATCGATACGGATGATGAATGATGATTGATATATGTAAATTTCGATCTTCTATAATAACATCAATTCTGTAGTTAGAAAATTATCTGCGCGATGTACCGCCAAAACCTTTAAGAGTAAAGAGGAAAGTGCGAAACATTGAATAAGTATGCAGTTAAAGTGAGATTTTTGCAAATTTGAATAAACAAACTACTCTATACACACACAAACAATAAACATTAGTACATTACCCGATGATATATGAGTTTCGGGTGAAGGAGTTCGTGAACGACGATCATGTGTAAAATGTGTATTTGAAGAAGTATAATGTGAATCTGAAAAACCAGTTCCACTTCGAACAAATGATTCTTCTTCAGTATAGACTGGAGTAGTTCGTGAATAACCACTGCCAGGATTGGTATTTGATCTAGATCCCATAAAATAGCCTCCAAGAAATCCAGCACCTGCAGCTAGCCCATTAGATAACCAC] [-] EMBL CD084386 [GACTAAATTCAATGAAACTCAAAGGATAATTCTGTAGGAACATCTTGAAATAGATCGATACGGATGATGAATGATGATTGATATATGTAAATTTCGATCTTCTATAATAACATCAATTCTGTAGTTAGAAAATTATCTGCGCGATGTACCGCCAAAACCTTTAAGAGTAAAGAGGAAAGTGCGAAACATTGAATAAGTATGCAGTTAAAGTGAGATTTTTGCAAATTTGAATAAACAAACTACTCTATACACACACAAACAATAAACATTAGTACATTACCCGATGATATATGAGTTTCGGGTGAAGGAGTTCGTGAACGACGATCATGTGTAAAATGTGTATTTGAAGAAGTATAATGTGAATCTGAAAAACCAGTTCCACTTCGAACAAATGATTCTTCTTCAGTATAGACTGGAGTAGTTCGTGAATAACCACTGCCAGGATTGGTATTTGATCTAGATCCCATAAAATAGCCTCCAAGAAATCCAGCACCTGCAGCTAGCCCATTAGATAACCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7465#0 -TTAAAATTTTATACACATTATGTATACATATAGACAGAACAAAAATAAACTCGGTGATA 59 consensus_7465#1 GACTAAATTCAATGAAACTCAAAGGATAATTCTGTAGGAACATCTTGAAATAGATCGATA 60 ***** ** * * * ** * ***** *** **** consensus_7465#0 ACAAAACAATGAGTTCAAAGTTGGAGAAAATAACCCCGAACACAAGTTATTGATCATTGA 119 consensus_7465#1 --CGGATGATGAATGATGATTGATATATGTAAATTTCGATCTTCTATAAT--AACATC-- 114 * **** * * * * * ** *** * * ** * *** consensus_7465#0 AATAATGAAAATAGAAGAAAATAATGAAAGTACATGACTAAATTCAATTGAACTCAAAGG 179 consensus_7465#1 AATTCTGTAGTTAGAAAATTATCTGCGCGATGTACCGCCAAAACCTTTAAGAGTAAAGAG 174 *** ** * ***** * ** * * * *** * * * * ** * consensus_7465#0 ATAATTCTGTAGGAACATCTTGAAATAGATCGATACGGATGATGAATGATGATTGATATA 239 consensus_7465#1 GAAAGTGCG---AAACATT---GAATAAGT--ATGCAGTTAA--AGTGA-----GATTTT 219 ** * * ***** **** * ** * * * * * *** *** * consensus_7465#0 TGTAAATTTCGATCTTCTATAATAACATCAATTCTGTAGTTAGA-AAATTATCTGCGCGA 298 consensus_7465#1 TGCAAATTTGAAT--------AAACAAACTACTCTATACACACACAAACAATAAACATTA 271 ** ****** ** * * * * * *** ** * * *** ** * * consensus_7465#0 TGTACCGCCAAAACCCGATGATATATGAGTTTCGGGTGAAGGAGTTCGTGAA-GACGATC 357 consensus_7465#1 -GTAC----ATTACCCGATGATATATGAGTTTCGGGTGAAGGAGTTCGTGAACGACGATC 326 **** * **************************************** ******* consensus_7465#0 ATGTGTAAAATGTGTATTTGAAGAAGTATAATGTGAATCTGAAAAACCAGTTCAACTTCG 417 consensus_7465#1 ATGTGTAAAATGTGTATTTGAAGAAGTATAATGTGAATCTGAAAAACCAGTTCCACTTCG 386 ***************************************************** ****** consensus_7465#0 AACAAATGATTCTTCTTCAGTATAGACTGGAGTAGTTCGTGAATAACCACTGCCAGGATT 477 consensus_7465#1 AACAAATGATTCTTCTTCAGTATAGACTGGAGTAGTTCGTGAATAACCACTGCCAGGATT 446 ************************************************************ consensus_7465#0 GGTATTTGATCTAGATCCCATAAAATAGCCTCCAAGAAATCCAGCACCTGCAGCTAGCCC 537 consensus_7465#1 GGTATTTGATCTAGATCCCATAAAATAGCCTCCAAGAAATCCAGCACCTGCAGCTAGCCC 506 ************************************************************ consensus_7465#0 ATTAGATAACCATGAAGTAGACTGATCTTCTGATTTATTCCAATTCCATCGAGAACGTGA 597 consensus_7465#1 ATTAGATAACCAC----------------------------------------------- 519 ************ consensus_7465#0 CTGTGATGGACCCATAACATTTGATGTCCAACCGTATTCTGGAGGTGCTGATGACGCTTG 657 consensus_7465#1 ------------------------------------------------------------ consensus_7465#0 ACCTCTTCTTGTAGAATCGTCTTCATGATCATTGAAA 694 consensus_7465#1 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||