These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7468#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1319 fasta sequence [ACAACTGAACGCGGTATACCAGAAAGAGGTTACATTACCTTAGCTGTACGAATTGAAGGTGATTTATCCAACATTAAAAAACATCCATTTCTATCTGTACATATATTTGATGCACGTTGTATTCTGAGTAGGAATGTAGAACCGAAAGCAGGGAAATTTTATGTGAAAGCACGTCTTCAATTAGCTGGCATAAACAATTCTGTATCCATGTTATCCTTGGATCGAATATCCACAAAATCATTGAAAATTTTTTCTAATAAAATGGATATATTTACAACGAATAGAAATTCTTCAATAGTGCATACTGGTCGTACACCTGTGAAACGTGCTTATCGTTCACCAGTGTTTCGGCATAAAATTGTCTTACCTCTACCATTGAATATAATTGATGCAATAAATAAACGATCAACATCACTTTTTGAATCCATGGAGTCCATTTCATCAATAGACTTAGAAGATGGTACAATACAAAATTATGAGCTTAAAATAGATTTGAAAGAACGTAATGCATGTAAAACAAATGATTTACATGGAACTTCTACTGTTCAATATTTACCATATTGGAGTTCTTCACAACTAATTGGTAGTGTACGTATTCCTATAACATCTAAAATGTGGCAATATCTAATGGAAGATGTGAATAAATTACGTCGTTCTACAGTTGTGAACTTGGAAACCTTTCAAGATATGAAAACAAAAGAGAAATCATTAGAATTATTACCAAATAAATTGTTATGGTTTGTTAGGTGTCTGAAAGTTCCAGATGAAGATGCCAGTTCACGAGGGGAGATTACTTTTGGTATGCAGTATAATCAAGAGACTGGTAGTCTAACTATTAGCCTATTTAATTGTGCTGCAATGAATTTGCCTAAAAGAACAAAGAATTTATTTGTTCGTGCCTCATTGTGTTCAAATTGGAAATTATTTCGAACTGTTCAATCTAGACCAACTGCTCGACTTTCAGTGAATTCAGCAGAGTTTATATTGGGTGAGAAATTAAATGTTATCATTGAAGAAGATATTAGTAGTGTATGTATAATACTGAGTGTGTTCGCACGATCTGGAAGTANACTANCAGAAGCTACTACACTTATTGGGTCGNTGTGTAACTGGACCATCAGATTTAGCTTTGCGTGATGGNACTTACATGGACATCAGTCTGTCTAGACAAGGCATGATAGACGACTCTATCTCTATAATGATACGNATCATGTGAATATGACTTTCATATATACTGACTGTCATGCTAATTGATTCTCTATAATATGATATTTCTACTGTGACTAAGTACACGATGTGCGTATATAATTGGAATTTGT] [+] EMBL AI976014 [ACAACTGAACGCGGTATACCAGAAAGAGGTTACATTACCTTAGCTGTACGAATTGAAGGTGATTTATCCAACATTAAAAAACATCCATTTCTATCTGTACATATATTTGATGCACGTTGTATTCTGAGTAGGAATGTAGAACCGAAAGCAGGGAAATTTTATGTGAAAGCACGTCTTCAATTAGCTGGCATAAACAATTCTGTATCCATGTTATCCTTGGATCGAATATCCACAAAATCATTGAAAATTTTTTCTAATAAAATGGATATATTTACAACGAATAGAAATTCTTCAATAGTGCATACTGGTCGTACACCTGTGAAACGTGCTTATCGTTCACCAGTGTTTCGGCATAAAATTGTCTTACCTCTACCATTGAATATAATTGATGCAATAAATAAACGATCAACATCACTTTTTGAATCCATGGAGTCCATTTCATCAATAGACTTAGAAGATGGTACAATACAAAATTATGAGCTTAAAATAGATTTGAAAGAACGTAATGCATGTAAAACAAATGATTTACATGTAACTTCTACTGTTCAAT ] [+] EMBL CD128737 [ GCATAAAATTGTCTTACCTCTACCATTGCATATAATTGATGCAATAAATAAACGATCAACATCACTTTTTGAATCCATGGAGTCCATTTCATCAATAGACTTAGAAGATGGTACAATACGAAATTATGAGCTTAAAATAGATTTGAAAGAACGTATTGCATGTAAAACAAATGATTTACATGGAACTTCTACTGTTCAATATTTACCATATTGGAGTTCTTCACAACTAATTGGTAGTGTACGTATTCCTATAACATCTAAAATGTGGCAATATCTAATGGAAGATGTGAATAAATTACGTCGTTCTACAGTTGTGAACTTGGAAACCTTTCAAGATATGAAAACAAAAGAGAAATCATTAGAATTATTACCAAATAAATTGTTATGGTTTGTTAGGTGTCTGAAAGTTCCAGATGAAGATGCCAGTTCACGAGGGGAGATTACTTTTGGTATGCAGTATAATCAAGAGACTGGTAGTCTAACTATTAGCCTATTTAATTGTGCTGCAATGAATTTGCCTAAAAGAACAAAGAATTTATTTGTTCGTGCCTCATTGTGTTCAAATTGGAAATTATTTCGAACTGTTCAATCTAGACCAACTGCTCGACTTTCAGTGAATTCAGCAGA ] [+] EMBL CD079443 [ TCAACATCACTTTTTGAATCCATGGAGTCCATTTCATCAATAGACTTAGAAGATGGTACAATACAAAATTATGAGCTTAAAATAGATTTGAAAGAACGTAATGCATGTAAAACAAATGATTTACATGGAACTTCTACTGTTCAATATTTACCATATTGGAGTTCTTCACAACTAATTGGTAGTGTACGTATTCCTATAACATCTAAAATGTGGCAATATCTAATGGAAGATGTGAATAAATTACGTCGTTCTACAGTTGTGAACTTGGAAACCTTTCAAGATATGAAAACAAAAGAGAAATCATTAGAATTATTACCAAATAAATTGTTATGGTTTGTTAGGTGTCTGAAAGTTCCAGATGAAAATGCCAGTTCACGAGGGGAGATTACTTTTGGTATGCAGTATAATCAAGAGACTGGTAGTCTAACTATTAGCCTATTTAATTGTGCTGCAATGAATTTGCCTAAAAGAACAAAGAATTTATTTGTTCGTGCCTCATTGTGTTCAAATTGGAAATTATTTCGAACTGTTCAATCTAGACCAACTGCTCGATTTTCAGTGAATTCAGCAGAGTTTATATTGGGTGAGAAATTAAATGTTATCATTGAAGAAGATATTAGTAGTGTATGTATAATACTGAGTGTGTTCGCACGATCTGGAAGTANACTANCAGAAGCTACTACACTTATTGGGTCGNTGTGTAACTGGACCATCAGATTTAGCTTTGCGTGATGGNACTTACATGGACATCAGTCTGTCTAGACAAGGCATGATAGACGACTCTATCTCTATAATGATACGNATCATGTGAATATGACTTTCATATATACTGACTGTCATGCTAATTGATTCTCTATAATATGATATTTCTACTGTGACTAAGTACACGATGTGCGTATATAATTGGAATTTGT] [+] EMBL CD128318 [ GGAGTCCATTTCATCAATAGACTTAGAAGATGGTACAATACAAAATTATGAGCTTAAAATAGATTTGAAAGAACGTAATGCATGTAAAACAAACGATTTACATGGAACTTCTACTGTTCAATATTTACCATATTGGAGTTCTTCACAACTAATTGGTAGTGTACGTATTCCTATAACATCTAAAATGTGGCAATATCTAATGGAAGATGTGAATAAATTACGTCGTTCTACAGTTGTGAACTTGGAAACCTTTCAAGATATGAAAACAAAAGAGAAATCATTAGAATTATTACCAAATAAATTGTTATGGTTTGT ] consensusID : consensus_7468#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence [AGGTGTCTGAAAGTTCCAGATGANAATGCCAGTTCACGAGGGGAGATTACTTTTGGTATGCAGTATAATCAAGAGACTGGTAGTCTAACTATTAGCCTATTTAATTGTGCTGCAATGAATTTGCCTAAAAGAACAAAGAATTTATTTGTTCGTGCCTCATTGTGTTCAAATTGGAAATTATTTCGAACTGTTCAATCTAGACCAACTGCTCGATTTTCAGTGAATTCAGCAGAGTTTATATTGGGTGAGAAATTAAATGTTATCATTGAAGAAGATATTAGTAGTGTATGTATAATACTGAGTGTGTTCGCACGATCTGGAAGTAAACTACAAGAAGCTACTACACTTATTGGTCGTAGTGTAACTGGACCATCAGATTTAGCTTGCGGTGATGGACTTTCACATTGGACATCAGTCTGTTCTAGACAAGGCATGATAAGACGTACTCATATTCTCTCATAAATGATTACAGTATCTATGTGAAATAGTGAACTTTTCATTTATATCAGCTGAACTGTTCAATGCTTAATTTGCATTTTCTTCTTATAATATAAATGAAATATTTTCTTTACTTGTTGACTAAGTATGTTTAACACTGAAATGTTGTCTGTTATTAATAGAATTATGGGATATTTTGATGTATACGTAAATAT] [-] EMBL CD073713 [AGGTGTCTGAAAGTTCCAGATGANAATGCCAGTTCACGAGGGGAGATTACTTTTGGTATGCAGTATAATCAAGAGACTGGTAGTCTAACTATTAGCCTATTTAATTGTGCTGCAATGAATTTGCCTAAAAGAACAAAGAATTTATTTGTTCGTGCCTCATTGTGTTCAAATTGGAAATTATTTCGAACTGTTCAATCTAGACCAACTGCTCGATTTTCAGTGAATTCAGCAGAGTTTATATTGGGTGAGAAATTAAATGTTATCATTGAAGAAGATATTAGTAGTGTATGTATAATACTGAGTGTGTTCGCACGATCTGGAAGTAAACTACAAGAAGCTACTACACTTATTGGTCGTAGTGTAACTGGACCATCAGATTTAGCTTGCGGTGATGGACTTTCACATTGGACATCAGTCTGTTCTAGACAAGGCATGATAAGACGTACTCATATTCTCTCATAAATGATTACAGTATCTATGTGAAATAGTGAACTTTTCATTTATATCAGCTGAACTGTTCAATGCTTAATTTGCATTTTCTTCTTATAATATAAATGAAATATTTTCTTTACTTGTTGACTAAGTATGTTTAACACTGAAATGTTGTCTGTTATTAATAGAATTATGGGATATTTTGATGTATACGTAAATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7468#0 ACAACTGAACGCGGTATACCAGAAAGAGGTTACATTACCTTAGCTGTACGAATTGAAGGT 60 consensus_7468#1 ------------------------------------------------------------ consensus_7468#0 GATTTATCCAACATTAAAAAACATCCATTTCTATCTGTACATATATTTGATGCACGTTGT 120 consensus_7468#1 ------------------------------------------------------------ consensus_7468#0 ATTCTGAGTAGGAATGTAGAACCGAAAGCAGGGAAATTTTATGTGAAAGCACGTCTTCAA 180 consensus_7468#1 ------------------------------------------------------------ consensus_7468#0 TTAGCTGGCATAAACAATTCTGTATCCATGTTATCCTTGGATCGAATATCCACAAAATCA 240 consensus_7468#1 ------------------------------------------------------------ consensus_7468#0 TTGAAAATTTTTTCTAATAAAATGGATATATTTACAACGAATAGAAATTCTTCAATAGTG 300 consensus_7468#1 ------------------------------------------------------------ consensus_7468#0 CATACTGGTCGTACACCTGTGAAACGTGCTTATCGTTCACCAGTGTTTCGGCATAAAATT 360 consensus_7468#1 ------------------------------------------------------------ consensus_7468#0 GTCTTACCTCTACCATTGAATATAATTGATGCAATAAATAAACGATCAACATCACTTTTT 420 consensus_7468#1 ------------------------------------------------------------ consensus_7468#0 GAATCCATGGAGTCCATTTCATCAATAGACTTAGAAGATGGTACAATACAAAATTATGAG 480 consensus_7468#1 ------------------------------------------------------------ consensus_7468#0 CTTAAAATAGATTTGAAAGAACGTAATGCATGTAAAACAAATGATTTACATGGAACTTCT 540 consensus_7468#1 ------------------------------------------------------------ consensus_7468#0 ACTGTTCAATATTTACCATATTGGAGTTCTTCACAACTAATTGGTAGTGTACGTATTCCT 600 consensus_7468#1 ------------------------------------------------------------ consensus_7468#0 ATAACATCTAAAATGTGGCAATATCTAATGGAAGATGTGAATAAATTACGTCGTTCTACA 660 consensus_7468#1 ------------------------------------------------------------ consensus_7468#0 GTTGTGAACTTGGAAACCTTTCAAGATATGAAAACAAAAGAGAAATCATTAGAATTATTA 720 consensus_7468#1 ------------------------------------------------------------ consensus_7468#0 CCAAATAAATTGTTATGGTTTGTTAGGTGTCTGAAAGTTCCAGATGAAGATGCCAGTTCA 780 consensus_7468#1 ------------------------AGGTGTCTGAAAGTTCCAGATGANAATGCCAGTTCA 36 *********************** *********** consensus_7468#0 CGAGGGGAGATTACTTTTGGTATGCAGTATAATCAAGAGACTGGTAGTCTAACTATTAGC 840 consensus_7468#1 CGAGGGGAGATTACTTTTGGTATGCAGTATAATCAAGAGACTGGTAGTCTAACTATTAGC 96 ************************************************************ consensus_7468#0 CTATTTAATTGTGCTGCAATGAATTTGCCTAAAAGAACAAAGAATTTATTTGTTCGTGCC 900 consensus_7468#1 CTATTTAATTGTGCTGCAATGAATTTGCCTAAAAGAACAAAGAATTTATTTGTTCGTGCC 156 ************************************************************ consensus_7468#0 TCATTGTGTTCAAATTGGAAATTATTTCGAACTGTTCAATCTAGACCAACTGCTCGACTT 960 consensus_7468#1 TCATTGTGTTCAAATTGGAAATTATTTCGAACTGTTCAATCTAGACCAACTGCTCGATTT 216 ********************************************************* ** consensus_7468#0 TCAGTGAATTCAGCAGAGTTTATATTGGGTGAGAAATTAAATGTTATCATTGAAGAAGAT 1020 consensus_7468#1 TCAGTGAATTCAGCAGAGTTTATATTGGGTGAGAAATTAAATGTTATCATTGAAGAAGAT 276 ************************************************************ consensus_7468#0 ATTAGTAGTGTATGTATAATACTGAGTGTGTTCGCACGATCTGGAAGTANACTANCAGAA 1080 consensus_7468#1 ATTAGTAGTGTATGTATAATACTGAGTGTGTTCGCACGATCTGGAAGTAAACTACAAGAA 336 ************************************************* **** **** consensus_7468#0 GCTACTACACTTATTGGGTCGNTGTGTAACTGGACCATCAGATTTAGCTTTGCGTGATGG 1140 consensus_7468#1 GCTACTACACTTATTGG-TCGTAGTGTAACTGGACCATCAGATTTAGCTTGCGGTGATGG 395 ***************** *** *************************** ******* consensus_7468#0 NACTT-ACAT-GGACATCAGTCTGT-CTAGACAAGGCATGATA-GACG-ACTC----TAT 1191 consensus_7468#1 ACTTTCACATTGGACATCAGTCTGTTCTAGACAAGGCATGATAAGACGTACTCATATTCT 455 ** **** ************** ***************** **** **** * * consensus_7468#0 CTCTATAATGAT-AC-GNATC-ATGTGAA----TATGACTTTCATATATACTGACTGTCA 1244 consensus_7468#1 CTCATAAATGATTACAGTATCTATGTGAAATAGTGAACTTTTCATTTATATCAGCTGAAC 515 *** ****** ** * *** ******* * ****** **** *** consensus_7468#0 TGCTAATTGATTCTCTATAATATGATATTTCTACTGTGACT-AAGTACACGATGTGCGTA 1303 consensus_7468#1 TGTTCAATGCTTAATTTGCATTTTCTTCTTATAATATAAATGAAATATTTTCTTTACTTG 575 ** * * ** ** * ** * * ** ** * * * * ** ** * * * * consensus_7468#0 TATAATTGGAATTTGT-------------------------------------------- 1319 consensus_7468#1 TTGACTAAGTATGTTTAACACTGAAATGTTGTCTGTTATTAATAGAATTATGGGATATTT 635 * * * * ** * * consensus_7468#0 ------------------ consensus_7468#1 TGATGTATACGTAAATAT 653 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||