These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7470#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 655 fasta sequence [AGAAATAAGAGTAGTACCCATATAGTATAGAAAACTTTTAGTGTTGTCCCAGTCAACAGAGAGATATGCGGAAATGTTATCAGAATTACACTCCAGGTAAGTAACATTGTGCACATTGGTAACTTGAACGAGACGCGATCAACAATCTCACCCCATATAATACGTCCTGCACAGTTGAACAGCGATGAAGCTGTAGCCACAGCTGACAAAAACCTGTCATCGCTAATAAATGTTTGACCAAATAGTTTGTACGCAGAAGTAATGATAGTGATTGGTATTATATCACAAAACATTATGCACCATAACAGATAAAAATCAATATAACGAAAAACTTGTTTTGGACTGATGTTGATTTCCCTAGATAAGCCCGATTTGTCATTAAGTGAAGATGATGCCTTTGGGCTGCAACTCGGATTACCTGTGTTTGAACCACTTACGCGTTTTGAAGTAGGTTTAGGACGTAATAACGCAAATCCAATAACTTGAATAGACAGCAAAATGCCGCCAAGTATGAGAAATGCTGACGGTAAACGGTCCAAAACATCAGGATCGTTAAATCGTCTTGT-ACACTGTTCACCTTTACATTATGGNGATTGNATAGTGCTNGTTGAATTGTGTGAAACCAGTGCTCCCAGACAGAGCTACTCAGGACAGA] [+] EMBL CD189717 [AGAAATAAGAGTAGTACCCATATAGTATAGAAAACTTTTAGTGTTGTCCCAGTCAACAGAGAGATATGCGGAAATGTTATCAGAATTACACTCCAGGTAAGTAACATTGTGCACATTGGTAACTTGAACGAGACGCGATCAACAATCTCACCCCATATAATACGTCCTGCACAGTTGAACAGCGATGAAGCTGTAGCCACAGCTGACAAAAACCTGTCATCGCTAATAAATGTTTGACCAAATAGTTTGTACGCAGAAGT ] [+] EMBL CD190263 [ AGATATGCGGAAATGTTATCAGAATTACACTCCAGGTAAGTAACATTGTGCACATTGGTAACTTGAACGAGACGCGATCAACAATCTCACCCCATATAATACGTCCTGCACAGTTGAACAGCGATGAAGCTGTAGCCACAGCTGACAAAAACCTGTCATCGCTAATAAATGTTTGACCAAATAGTTTGTACGCAGAAGTAATGATAGTGATTGGTATTATATCACAAAACATTATGCACCATAACAGATAAAAATCAATATAACGAAAAACTTGTTTTGGACTGATGTTGATTTCCCTAGATAAGCCCGATTTGTCATTAAGTGAAGATGATGCCTTTGGGCTGCAACTCGGATTACCTGTGTTTGAACCACTTACGCGTTTTGAAGTAGGTTTAGGACGTAATAACGCAAATCCAATAACTTGAATAGACAGCAAAATGCCGCCAAGTATGAGAAATGCTGACGGTAAACGGTCCAAAACATCAGGATCGTTAAATCGTCTTGT ACACTGTTCACCTTTACATTATGGNGATTGNATAGTGCTNGTTGAATTGTGTGAAACCAGTGCTCCCAGACAGAGCTACTCAGGACAGA] [-] EMBL CD112697 [ CTGTCATCGCTAATAAATGTTTGACCAAATAGTTTGTACGCAGAAGTAATGATAGTGATTGGTATTATATCACAAAACATTATGCACCATAACAGATAAAAATCAATATAACGAAAAACTTGTTTTGGACTGATGTTGATTTCCCTAGATAAGCCCGATTTGTCATTAAGTGAAGATGATGCCTTTGGGCTGCAACTCGGATTACCTGTGTTTGAACCACTTACGCGTTTTGAAGTAGGTTTAGGACGTAATAACGCAAATCCAATAACTTGAATAGACAGCAAAATGCCGCCAAGTATGAGGAATGCTGACGGTAAACGGTCCAAAACATCAGGATCGTTAAATCGTCTTGTAACACTGTTCACCTTTACATTA ] [+] EMBL CD181995 [ TTGAACCACTTACGCGTTTTGAAGTAGGTTTAGGACGTAATAACGCAAATCCAATAACTTGAATAGACAGCAAAATGCCGCCAAGTATGAGAAATGCTGACGGTAAACGGTCC AAACATCA ] consensusID : consensus_7470#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence [GATGAAGCTGTAGCCACAGCTGACAAAAACCTGTCATCGCTAATAAATGTTTGACCAAATAGTTTGTACGCAGAAGTAATGATAGTGATTGGTATTATATCACAAAACATTATGCACCATAACAGATAAAAATCAATATAACGAAAAACTTGTTTTGGACTGATGTTGATTTCCCTAGATAAGCCCGATTTGTCATTAAGTGAAGATGATGCCTTTGGGCTGAATAACAAATGTACCGCTCAGTGTGAGAAATAAGAGTAGTACCCATATAGTATAGAAAACTTTTAGTGTTGTCCCAGTCAACAGAGAGATATGCGGAAATGTTATCAGAATTACACTCCAGGTAAGTAACATTGTGCACACTGGTAACTTGAACGAGACGCGATCAACAATCTCACCCCATATAATACGTCCTGCACAGTTGAAC] [+] EMBL CD113661 [GATGAAGCTGTAGCCACAGCTGACAAAAACCTGTCATCGCTAATAAATGTTTGACCAAATAGTTTGTACGCAGAAGTAATGATAGTGATTGGTATTATATCACAAAACATTATGCACCATAACAGATAAAAATCAATATAACGAAAAACTTGTTTTGGACTGATGTTGATTTCCCTAGATAAGCCCGATTTGTCATTAAGTGAAGATGATGCCTTTGGGCTGAATAACAAATGTACCGCTCAGTGTGAGAAATAAGAGTAGTACCCATATAGTATAGAAAACTTTTAGTGTTGTCCCAGTCAACAGAGAGATATGCGGAAATGTTATCAGAATTACACTCCAGGTAAGTAACATTGTGCACACTGGTAACTTGAACGAGACGCGATCAACAATCTCACCCCATATAATACGTCCTGCACAGTTGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7470#0 AGAAATAAGAGTAGTACCCATATAGTATAGAAAACTTTTAGTGTTGTCCCAGTCAACAGA 60 consensus_7470#1 ------------------------------------------------------------ consensus_7470#0 GAGATATGCGGAAATGTTATCAGAATTACACTCCAGGTAAGTAACATTGTGCACATTGGT 120 consensus_7470#1 ------------------------------------------------------------ consensus_7470#0 AACTTGAACGAGACGCGATCAACAATCTCACCCCATATAATACGTCCTGCACAGTTGAAC 180 consensus_7470#1 ------------------------------------------------------------ consensus_7470#0 AGCGATGAAGCTGTAGCCACAGCTGACAAAAACCTGTCATCGCTAATAAATGTTTGACCA 240 consensus_7470#1 ---GATGAAGCTGTAGCCACAGCTGACAAAAACCTGTCATCGCTAATAAATGTTTGACCA 57 ********************************************************* consensus_7470#0 AATAGTTTGTACGCAGAAGTAATGATAGTGATTGGTATTATATCACAAAACATTATGCAC 300 consensus_7470#1 AATAGTTTGTACGCAGAAGTAATGATAGTGATTGGTATTATATCACAAAACATTATGCAC 117 ************************************************************ consensus_7470#0 CATAACAGATAAAAATCAATATAACGAAAAACTTGTTTTGGACTGATGTTGATTTCCCTA 360 consensus_7470#1 CATAACAGATAAAAATCAATATAACGAAAAACTTGTTTTGGACTGATGTTGATTTCCCTA 177 ************************************************************ consensus_7470#0 GATAAGCCCGATTTGTCATTAAGTGAAGATGATGCCTTTGGGCTGCAACTCGGATTACCT 420 consensus_7470#1 GATAAGCCCGATTTGTCATTAAGTGAAGATGATGCCTTTGGGCTG-------AATAACAA 230 ********************************************* ** ** consensus_7470#0 GTGTTTGAACCACTTACGCGTTTTGAAGTAGGTTTAGGACGTAATAACGCAAATCCAATA 480 consensus_7470#1 ATGT----ACCGCTCA-GTGTGA-GAAATAAGAGTAGTACCCA-TATAGTATA---GAAA 280 *** *** ** * * ** *** ** * *** ** * ** * * * * * consensus_7470#0 ACTTGAATAGACAGCAAAATGCCGCCAAGTATGAGAAATGCTGACG-GTAAACGGTCCAA 539 consensus_7470#1 ACTTTTAGTGTTGTCC-----CAGTCAACAGAGAGATATGCGGAAATGTTATCAGAATTA 335 **** * * * * * *** **** **** ** ** * * * * consensus_7470#0 AACATCAGGATCGTTAAATCGTCTTGTACACTGTTCACCTTTACATTATGGNGATTGNAT 599 consensus_7470#1 CACTCCAGGTAAGTAACATTGT---GCACACTGGTAACTTGAACGAGACG-CGATC-AAC 390 ** **** ** * ** ** * ****** * ** * ** * * *** * consensus_7470#0 AGTGCTNGTTGAATTGTGTGAAACCAGTGCTCCCAGACAGAGCTACTCAGGACAGA 655 consensus_7470#1 AAT-CTCACCCCATATAATACGTCCTGCACAGTTGAAC------------------ 427 * * ** ** * ** * * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||