These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7501#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 688 fasta sequence [TTCGGCACGAGGCGATACTGGAAAGCCACTGTGGGAAGCTCGTGCAGACATTGAGGCTTGTGCAGATTCATTTGAGCTATTTGCTGGTTTTATCCCAAGTTTTGTTGGGACTCATTCTCCTGTCCCACCAAATCCTGGCAGTTTTTATTATACCAGAAGAGAACCATTTGGACTTTGTGCTGGTATCGGAGCATGGAATTTTCCTTTTCAAATGGCTGTATGGAAATCTGTTCCTGCGTTAGCTGCTGGAAATTCCTTCATATTTAAACCATCTCCTTTAACTCCATTAACAGCTATTCGTTTATACGAATTGTATAAACTTGCTGGATGTCCTGAAAATCTTTACCAAGTTGTTCTAGGAGGTGTTGAAATTGGTCAAGCATTAGTAAATCATCCTTTAGTTAGAAAAGTATCATTTACAGGAAGTGTTGCAGGAGGTCGATCTGTGCTTAAGTGCGCTGCTGAACGCATTATACCAAGTACACTTGAACTAGGCGGAAAATCACCATTAATTATAATGTCAGATGCTAATTTAGATGAAGCTGTTAAAGGCACTTTGATGGCTAATTTTTATACTCAAGGACAAGTATGTTCTAATGCTGCTCGTGTATTTGTTCATAGATCTATTGCAGCACCATTCACTCAAAAACTTATTGAATCAGTTAAACCAATTTTAGNTCGTGATCCT] [+] EMBL CD081472 [TTCGGCACGAGGCGATACTGGAAAGCCACTGTGGGAAGCTCGTGCAGACATTGAGGCTTGTGCAGATTCATTTGAGCTATTTGCTGGTTTTATCCCAAGTTTTGTTGGGACTCATTCTCCTGTCCCACCAAATCCTGGCAGTTTTTATTATACCAGAAGAGAACCATTTGGACTTTGTGCTGGTATCGGAGCATGGAATTTTCCTTTTCAAATGGCTGTATGGAAATCTGTTCCTGCGTTAGCTGCTGGAAATTCCTTCATATTTAAACCATCTCCTTTAACTCCATTAACAGCTATTCGTTTATACGAATTGTATAAACTTGCTGGATGTCCTGAAAATCTTTACCAAGTTGTTCTAGGAGGTGTTGAAATTGGTCAAGCATTAGTAAATCATCCTTTAGTTAGAAAAGTATCATTTACAGGAAGTGTTGCAGGAGGTCGATCTGTGCTTAAGTGCGCTGCTGAACGCATTATACCAAGTACACTTGAACTAGGCGGAAAATCACCATTAATTATAATGTCAGATGCTAATTTAGATGAAGCTGTTAAAGGCACTTTGATGGCTAATTTTTATACTCAAGGACAAGTATGTTCTAATGCTGCTCGTGTATTTGTTCATAGATCTATTGCAGCACCATTCACTCAAAAACTTATTGAATCAGTTAAACCAATTTTAGNTCGTGATCCT] [-] EMBL CD069052 [ aGATACTGGAAAGCCACTGTGGGAAGCTCGTGCAGACATTGAGGCTTGTGCAGATTCATTTGAGCTATTTGCTGGTTTTATCCCAAGTTTTGTTGGGACTCATTCTCCTGTCCCACCAAATCCTGGCAGTTTTTATTATACCAGAAGAGAACCATTTGGACTTTGTGCTGGTATCGGAGCATGGAATTTTCCTTTTCAAATGGCTGTATGGAAATCTGTTCCTGCGTTAGCTGCTGGAAATTCCTTCATATTTAAACCATCTCCTTTAACTCCATTAACAGCTATTCGTTTATACGAATTGTATAAACTTGCTGGATGTCCTGAAAATCTTTACCAAGTTGTTCTAGGAGGTGTTGAAATTGGTCAAGCATTAGTAAATCATCCTTTAGTTAGAAAAGTATCATTTACAGGAAGTGTTGCAG ] consensusID : consensus_7501#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 600 fasta sequence [GTTTCAAAGCGCTTTTATCCGATTCAGTAATTTGACTGAATTTTCAACATCAGCAACCAGATGTCAACAATTTCAAATGAATTGTGAATCATTTCAAGAGTGTCGTAAACAGGCTATTGAAAGACTCCACAAATGGTTAAATAATAGTCAGCTTCCATTGAAATTTGCTGCAGGGGATACGAAAGATCCAAGTTGCAATTACGATTATACTAGTTATGATCCGTCCACTTGGTTACCTTTGGTTCATTACAAACAAACAACATATTCACGACTTGATGAAATGGCTATTAACGCCTGTAAAGCACAAAAGCAATGGATTGATTTACCATTACTAGAACGTGCCAAAATTCTTAGAAAAGTTGGTGATCTTGTTCGTGCTGAAACAGATTGGCTTGCTGAATTAGAGACACTAGATACTGGAAAGCCACTGTGGGAAGCTCGTGCAGACATTGAGGCTTGTGCAGATTCATTTGAGCTATTTGCTGGTTTTATCCCAAGTTTTGTTGGGACTCATTCTCCTGTCCCACCAAATTCTGGCAGTTTTTATTATACCAGAAGAGAACCATTTGGACTTTGTGCTGGTATCGGAGCATGGAATTT] [-] EMBL CD146916 [GTTTCAAAGCGCTTTTATCCGATTCAGTAATTTGACTGAATTTTCAACATCAGCAACCAGATGTCAACAATTTCAAATGAATTGTGAATCATTTCAAGAGTGTCGTAAACAGGCTATTGAAAGACTCCACAAATGGTTAAATAATAGTCAGCTTCCATTGAAATTTGCTGCAGGGGATACGAAAGATCCAAGTTGCAATTACGATTATACTAGTTATGATCCGTCCACTTGGTTACCTTTGGTTCATTACAAACAAACAACATATTCACGACTTGATGAAATGGCTATTAACGCCTGTAAAGCACAAAAGCAATGGATTGATTTACCATTAATAGAACGTGCCAAAATTCTTAGAAAAGTTGGTGATCTTGTTCGTGCTGAAACAGATTGGCTTGCTGAATTAGAGACACTAGATACTGGAAAGCCACTGTGGGAAGCTCGTGCAGACATTGAGGCTTGTGCAGATTCATTT ] [+] EMBL CD157153 [ ACGAAAGATCCAAGTCGCAATTACGATTATACTAGTTATGATCCGTCCACTTGGTTACCTTTGGTTCATTACAAACAAACAACATATTCACGACTTGATGAAATGGCTATTAACGCCTGTAAAGCACAAAAGCAATGGATTGATTTACCATTACTAGAACGTGCCAAAATTCTTAGAAAAGTTGGTGATCTTGTTCGTGCTGAAACAGATTGGCTTGCTGAATTAGAGACACTAGATACTGGAAAGCCACTGTGGGAAGCTCGTGCAGACATTGAGGCTTGTGCAGATTCATTTGAGCTATTTGCTGGTTTTATCCCAAGTTTTGTTGGGACTCATTCTCCTGTCCCACCAAATTCTGGCAGTTTTTATTATACCAGAAGAGAACCATTTGGACTTTGTGCTGGTATCGGAGCATGGAATTT] [+] EMBL CD154583 [ AAGTTGCAATTACGATTATACTAGTTATGATCCGTCCACTTGGTTACCTTTGGTTCATTACAAACAAACAACATATTCACGACTTGATGAAATGGCTATTAACGCCTGTAAAGCACAAAAGCAATGGATTGATTTGCCATTACTAGAACGTGCC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7501#0 TTCGGCACGAGGCGATACTGGAAAGCCACTGTGGGAAGCTCGTGCAGACATTGAGGCTTG 60 consensus_7501#1 ------------------------------------------------------------ consensus_7501#0 TGCAGATTCATTTGAGCTATTTGCTGGTTTTATCCCAAGTTTTGTTGGGACTCATTCTCC 120 consensus_7501#1 ---------------GTTTCAAAGCGCTTTTATCCGATTCAGTAATTTGACTGAATTTTC 45 * * * ******** * * * **** * * * * consensus_7501#0 TGTCCCACCAAATCCTGGCAGTTTTTATTATACCAGAAGAGAACCATTTGGACTTTGTGC 180 consensus_7501#1 AACATCAGCAACCAGATGTCAACAATTTCAAATGAATTGTGAATCATTTCAAGA--GTGT 103 ** *** * * * * * * * *** ***** * *** consensus_7501#0 TGGTATCGGAGCATGGAATTTTCCTTTTCAAATGGCTGTATGGAAATCTGTTCCTGC--- 237 consensus_7501#1 CGTAAACAGGCTATTGAAAGA--CTCCACAAATGGTTAAATAATAGTCAGCTTCCATTGA 161 * * * * ** *** ** ******* * ** * ** * * * consensus_7501#0 -GTTAGCTGCTGGAAATTCCTTCATATTTAAACCATCTCCTTTAACTCCATTAACAGCTA 296 consensus_7501#1 AATTTGCTGCAGGGGATACGAA-AGATCCAAGTTG-CAATTACGATTATACTAGTTATGA 219 ** ***** ** ** * * ** ** * * * * * ** * consensus_7501#0 TTCGTTTATACGAATTGTATAAACTTGCTGGATGTCCTGAAAATCTTTACCAAGTTGTTC 356 consensus_7501#1 TCCGTCCACTTGGTTACCTTTGGTTCATTACAAACAAACAACATATTCAC-GACTTGATG 278 * *** * * * * * * * ** ** ** ** * *** * consensus_7501#0 TAGGAGGTGTTGAAATTGGTCAAGCATTAGTAAATCATCCTTTAGTTAGAAA--AGTATC 414 consensus_7501#1 AAATGGCTATTAACGCCTGTAAAGCACAA--AAGCAATGGATTGATTTACCATTACTAGA 336 * * * ** * ** ***** * ** ** ** ** * * ** consensus_7501#0 ATTTACAGGAAGTGTTGCAGGAGGT--CGATCT-GTGCTTAAGTGCGCTGCTGAACGCAT 471 consensus_7501#1 ACGTGCCAAAATTCTTAGAAAAGTTGGTGATCTTGTTCGTGCTGAAACAGATTGGCTTGC 396 * * * ** * ** * ** * ***** ** * * * * * * consensus_7501#0 TATACCAAGTACACTTGAACTAGGCGGAAAATCACCATTAATTATAATGTCAGATGCTAA 531 consensus_7501#1 TGAATTAGAGACACTAGAT---ACTGGAAAGCCACTGTGGGAAGCTCGTGCAGACATTGA 453 * * * ***** ** ***** *** * **** * * consensus_7501#0 --TTTAGATGAAGCTGTTAAAGGCACTTTGATGGCTAATTTTTATACTCAAGGACAAGTA 589 consensus_7501#1 GGCTTGTGCAGATTCATTTGAGCTATTT-----GCTGGTTTT---ATCCCAAGTTTTGTT 505 ** * ** ** * ** *** **** * * * * ** consensus_7501#0 TGTTCTAATGCTGCTCGTGTATTTGTTCATAG-ATCTATTGCAGCACCATTCACTCAAAA 648 consensus_7501#1 GGGACTCATTCTCCTGTCCCACCAAATTCTGGCAGTTTTTATTATACCAGAAG----AGA 561 * ** ** ** ** * * * * * * ** **** * * consensus_7501#0 ACTTATTGAATCAGTTAAACCAATTTTAGNTCGTGATCCT- 688 consensus_7501#1 ACCATTTGGACT--TTGTGCTGGTATCGGAGCATGGAATTT 600 ** *** * ** * * * * * ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||