These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7518#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 439 fasta sequence [AAGCAACTTCAATAGGATCTGTACCGCTATTTGATTGAGGACGACCATGATAGTCAACTGCTTGAATAGTGCACTAAAAAGAGAAGAAAATGGGGTTTAAAATGAACAATGTATTCACTTTAAAACAGATCATAAAAAACGCCTCTCAGTGAAGTTGTTTACAAAAACTGAACTGCATGCTTTGCTTATTCACAAATGTTAGGAGAGGTCAATATTTTTTGAGAGACAGTAGATGAAATTACCGTATTTAGTGATTCGAAAATATAATGTCGCTTGTGGTGTTTTTTTGTGAATAAATATTTTTGTTTATTGTGTGAAAAATGTACAACTACCTGAAATAATTTCTATACCCCAGACCACAGGATAGATGGAGTATTCATTTGGTAGTGTCTGCAAAAGAACATTTTGCCGTATTTCATACTAGCACGATTTCAAATGG] [+] EMBL CD150149 [AAGCAACTTCAATAGGATCTGTACCGCTATTTGATTGAGGACGACCATGATAGTCAACTGCTTGAATAGTGCACTAAAAAGAGAAGAAAATGGGGTTTAAAATGAACAATGTATTCACTTTAAAACAGATCATAAAAAACGCCTCTCAGTGAAGTTGTTTACAAAAACTGAACTGCATGCTTTGCTTATTCACAAATGTTAGGAGAGGTCAATATTTTTTGAGAGACAGTAGATGAAATTACCGTATTTAGTGATTCGAAAATATAATGTCGCTTGTGGTGTTTTTTTGTGAATAAATATTTTTGTTTATTGTGTGAAAAATGTACAACTACCTGAAATAATTTCTATACCCCAGACCACAGGATAGATGGAGTATTCATTTGGTAGTGTCTGCAAAAGAACATTTTGCCGTATTTCATACTAGCACGATTTCAAATGG] [+] EMBL CD150250 [AAGCAACTTCAATAGGATCTGTACCGCTATTTGATTGAGGACGACCATGATAGTCAACTGCTTGAATAGTGCACTAAAAAGAGAAGAAAATGGAGTTTAAAATGAACAATGTATTCACTTTAAAACAGATCATAAAAAACGCCTCTCAGTGAAGTTGTTTACAAAAACTGAACTGCATGCTTTGCTTATTCACAAATGTTAGGAGAGGTCAATATTTTTTGAGAGACAGTAGATGAGATTACCGTATTTAGTGATTCGAAAATATAATGTCGCTTGTGGTGTTTTTTTGTGAATAAATATTTTTGTTTATTGTGTGAAAAATGTACAACTACCTGAAATAATTTCTATACCCCAGACCACAGGATAGATGGAGTATTCATTTGGTAGTGTCTGCAAAAGAACATTTTGCCGTATTTCATACTAGCACGGTTTCAAATGG] consensusID : consensus_7518#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 397 fasta sequence [TAACAACCATTTCCGATATCTAATATATCAGTTGGGACTAAGTGACCTCGTGGATCTGTAAAAGCAACTTCAATAGGATCTGTACCGCTATTTGATTGAGGACGACCATGATAGTCAACTGCTTGAATAGTGCATTTAGCATACAGATGGGTAAACATTTCATTTGGTAAACGAGCAGTACATAATGCAGGATAGGTTGTACTAACAACTAAACGACCAAAGCCAGAAAGACAACGAGCAATATCAGGAAGGCTAGCTTGATGAGGAGAAGACTGAAGAGTTGTCGTAGAAGACACATTCGATCTTTGATGATGATTACGATGATGAAGTGAAGAGGATGGTGAGTCTGATTCATTATAATTTGTAACCGATGCTCCTGAGTAGTTTCCTGAAGAAA] [-] EMBL CD197510 [TAACAACCATTTCCGATATCTAATATATCAGTTGGGACTAAGTGACCTCGTGGATCTGTAAAAGCAACTTCAATAGGATCTGTACCGCTATTTGATTGAGGACGACCATGATAGTCAACTGCTTGAATAGTGCATTTAGCATACAGATGGGTAAACATTTCATTTGGTAAACGAGCAGTACATAATGCAGGATAGGTTGTACTAACAACTAAACGACCAAAGCCAGAAAGACAACGAGCAATATCAGGAAGGCTAGCTTGATGAGGAGAAGACTGAAGAGTTGTCGTAGAAGACACATTCGATCTTTGATGATGATTACGATGATGAAGTGAAGAGGATGGTGAGTCTGATTCATTATAATTTGTAACCGATGCTCCTGAGTAGTTTCCTGAAGAAA] [+] EMBL CD062625 [ GATCTGTAAAAGCAACTTCAATAGGATCTGTACCGCTATTTGATTGAGGACGACCATGATAGTCAACTGCGGGAATAGTGCATTTAGCATACAGATGGGTAAACATTTCATTTGGTAAACGAGCAGTACATAATGCAAGATAGGTTGTACTAACAACTAAACGACCAAAGCCAGAAAGACAACGAGCAATATCAGGAAGGCTACCTTGATGAGGACAAGACTGAATAGTTGTCCTATAACACACATTCCAT ] [-] EMBL CD062608 [ acccAATGCAACTTC GGGATCTGTACCGGTATTTGATTGAGGACGACCATGATAGTCAACTGCTTGAATAGTGCATTTAGCATACAGATGGGTAAACATTTCATTTGGTAAACGAGCAGTACATAATGCAGGATAGGTTGTATTAACAATTAAACGACCAAAGCCAGAAAGACAACGAGCCATATCAGGAAGGCTAGCTTGATGAGGAGAAAAATGAAGAGTTGTCGTAGAAGACACATTCGATCTTTGATGATGATTg ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7518#0 AAGCAACTTCAATAGGATCTGTACCGCTATTTGATTGAGGACGACCATGA-TAGTCAACT 59 consensus_7518#1 ---------TAACA--ACCATTTCCGATATCTAAT--ATATCAGTTGGGACTAAGTGACC 47 ** * * * * *** *** * ** * * ** ** ** consensus_7518#0 GCTTGAATAGTGCACTAAAAAGAGAAGAAAATGGGGTTTAAAATGAACAATGTATTCACT 119 consensus_7518#1 TCGTGGATC-TGTA----AAAGCAACTTCAATAGGATCTGTACCGC------TATTTGAT 96 * ** ** ** * **** * *** ** * * * * **** * consensus_7518#0 TTAAAACAGATCATAAAAAACGCCTCTCAGTGAAGTTGTTTACAAAAACTGAACTGCATG 179 consensus_7518#1 TGAGGAC-GACCATGATAGTCAACTGCTTGAATAGTGCATTTAGCATACAGATGGGTAAA 155 * * ** ** *** * * * ** * *** ** * ** ** * * consensus_7518#0 CTTTGCTTATTCACAAATGTTAGGAGAGGTCAATATTTTTTGAGAGACAGTAG--ATGAA 237 consensus_7518#1 CATTTCAT-TTGGTAAACG--AGCAGTACATAATGCAGGATAGGTTGTACTAACAACTAA 212 * ** * * ** *** * ** ** *** * * * ** * ** consensus_7518#0 ATTACCGTATTTAGTGATTCGAAAATATAATGTCGCTTGTGGTGTTTTTTTGTGAATAAA 297 consensus_7518#1 ACGACCAAAGCCAGAAAGACAACGA-GCAATATCAGGAAGGCTAGCTTGATGAGGAGAAG 271 * *** * ** * * * * *** ** * * ** ** * * ** consensus_7518#0 TATTTTTGTTTATTGTGTGAAAAATGTACAACTACCTGAAATAATTTCTATACCCCAGAC 357 consensus_7518#1 ACTGAAGAGTTGTCGTAGAAGACACATTCGATCTTTGATGATGATTACGATGATGAAGTG 331 * ** * ** * * * * * * ** *** * ** ** consensus_7518#0 CACAGGATAGATGGAGTATTCATTTGGTAGTGTCTGCAAAAGAACATTTTGCCGTATTTC 417 consensus_7518#1 AAGAGGATGGT--GAGT-CTGATTCATTATAATTTGTAACCGATGCTCCTGAGTAGTTTC 388 * ***** * **** * *** ** * ** ** ** * ** **** consensus_7518#0 ATACTAGCACGATTTCAAATGG 439 consensus_7518#1 CTGAAGAAA------------- 397 * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||