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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7520#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 815 fasta sequence
[GTGAGTACATATGAAATACTTAAATTTGACGATGTTCGTGAGTTCAAAAATGGAAAAAAGAAGATCAAATATTCAATGGCAGGCGAGACGTCCTTGTATAATAGTCCTGTGGTTACCTTATATCTGTACGATATGAAAACTATGAACTTTCAAGTAATTCCGCGACCTAAACAAATTCCTAGTGATGGATTACTGACAATGGCGCTCTGGATGAATGATGACATTTTTGTACATGCATGGACTAACCGTATTCAGAATCGTGGTTGGATAACCGTCTTCAGTCAATCTCTGAATCAAAGTTGGG-TTTTTTTTAAAATTGGTTATGAAACTGGATGGGTGGATTTGTTAAAGCACACTAATGTGGAGCCTATAATTAACAAAGACAATCAAGAAATGCTAATTATACTTCCAAGAGATTATTCAGAAAAAGGGTATAGGGGTATAGCGAAACTAAAAATTCCAATATTACCGTCAGAGACTCTTCAATTACCCAATTGGATTATTACGCCGAATTTTGATGTGAAGGAAATACTACATTATGATGGTAATGATGAAGTCATTTTTATTGGAACAGGACCTGACTCCAAAAACTCTCATGTTTATTGGACTTCACAATCCAGAGGTAATATGACTTGTCTTACTTGTGAAAATGTGAATAATACATATAATTGGGCAGAAGTTCTGGCAAACGGAAAGTATTTAGTTCAAGATGTTCGAGGCTCGGGTACTCCCAAAACTTTTCTAAAAAGAATTATTAGGAATTTTACAGAAACGAATAATTTCACGGTTACCACAGAAATAATCAAGTATTTTGT]
[+] EMBL CD170572 [GTGAGTACATATGAAATACTTAAATTTGACGATGTTCGTGAGTTCAAAAATGGAAAAAAGAAGATCAAATATTCAATGGCAGGCGAGACGTCCTTGTATAATAGTCCTGTGGTTACCTTATATCTGTACGATATGAAAACTATGAACTTTCAAGTAATTCCGCGACCTAAACAAATTCCTAGTGATGGATTACTGACAATGGCGCTCTGGATGAATGATGACATTTTTGTACATGCATGGACTAACCGTATTCAGAATCGTGGTTGGATAACCGTCTTCAGTCAATCTCTGAATCAAAGTTGGG TTTTTTTTAAAATTGGTTATGAAACTGGATGGGTGGATTTGTTAAAGCACACTAATGTGGAGCCTATAATTAACAAAGACAATCAAGAAATGCTAATTATACTTCCAAGAGATTATTCAGAAAAAGGGTAT ]
[+] EMBL CD097640 [ cCAAGTAATTCCGCGACCTAAACAAATTCCTAGTGATGGATTACTGACAATGGCGCTCTGGATGAATGATGACATTTTTGTACATGCATGGACTAACCGTATTCAGAATCGTGGTTGGATAACCGTCTTCAGTCAATCTCTGAATCAAAGTTGGGTTTTTTTTTAAAATT ]
[+] EMBL CD123993 [ GGATTTGTTAAAGCAGACTAATGTGGAGCCTATAATTAACAAAGAGAATCAAGAAATGTTAATTATACTTCCAAGAGATTATTCAGAAAAAGGGTATAGGGGTATAGCGAAACTAAAAATTCCAATATTACCGTCAGAGACTCTTCAATTACCCAATTGGATTATTACGCCGAATTTTGATGTGAAGGAAATACTACATTATGATGGTAATGATGAAGTCATTTTTATTGGAACAGGACCTGACTCCAAAAACTCTCATGTTTATTGGACTTCACAATCCAGAGGTAATATGACTTGTCTTACTTGTGAAAATGTGAATAATACATATAATTGGGCAGAAGTTCTGGCAAACGGAAAGTATTTAGTTCAAGATGTTCGAGGCTCGGGTACTCCCAAAACTTTTCTAAAAAGAATTATTAGGAATTTTACAGAAACGAATAATTTCACGGTTACCACAGAAATAATCAAGTATTTTGT]
consensusID : consensus_7520#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 277 fasta sequence
[GTTCTACACCTTTTCTTCATGATATATACTAGCTTTTGTCAACATTTTTATAAAGCAAAGTAAAATCATTTTATTTCCAGCCAATATTACCGTCAGAAACTCTTCAATTACCCAATTGGATTATTACGCCGAATTTTGATGTGAAGGAAATACTACATTATGATGGTAATGATGAAGTCATTTTTATTGGAACAGGACCTGACTCCAAAAACTCTCATGTTTATTGGTAAGTGGGAATATTTAATTATGGGATGCAGGCCAAGTAAATGTAAAGACA]
[+] EMBL CD114943 [GTTCTACACCTTTTCTTCATGATATATACTAGCTTTTGTCAACATTTTTATAAAGCAAAGTAAAATCATTTTATTTCCAGCCAATATTACCGTCAGAAACTCTTCAATTACCCAATTGGATTATTACGCCGAATTTTGATGTGAAGGAAATACTACATTATGATGGTAATGATGAAGTCATTTTTATTGGAACAGGACCTGACTCCAAAAACTCTCATGTTTATTGGTAAGTGGGAATATTTAATTATGGGATGCAGGCCAAGTAAATGTAAAGAC ]
[-] EMBL CD114942 [ TTCTACACCTTTTCTTCATGATATATACTAGCTTTTGTCAACATTTTTATAAAGCAAAGTAAAATCATTTTATTTCCAGCCAATATTACCGTCAGAAACTCTTCAATTACCCAATTGGATTATTACGCCGAATTTTGATGTGAAGGAAATACTACATTATGATGGTAATGATGAAGTCATTTTTATTGGAACAGGACCTGACTCCAAAAACTCTCATGTTTATTGGTAAGTGGGAATATTTAATTATGGGATGCAGGCCAAGTAAATGTAAAGACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7520#0 GTGAGTACATATGAAATACTTAAATTTGACGATGTTCGTGAGTTCAAAAATGGAAAAAAG 60
consensus_7520#1 ------------------------------------------------------------
consensus_7520#0 AAGATCAAATATTCAATGGCAGGCGAGACGTCCTTGTATAATAGTCCTGTGGTTACCTTA 120
consensus_7520#1 ------------------------------------------------------------
consensus_7520#0 TATCTGTACGATATGAAAACTATGAACTTTCAAGTAATTCCGCGACCTAAACAAATTCCT 180
consensus_7520#1 ------------------------------------------------------------
consensus_7520#0 AGTGATGGATTACTGACAATGGCGCTCTGGATGAATGATGACATTTTTGTACATGCATGG 240
consensus_7520#1 ------------------------------------------------------------
consensus_7520#0 ACTAACCGTATTCAGAATCGTGGTTGGATAACCGTCTTCAGTCAATCTCTGAATCAAAGT 300
consensus_7520#1 ------------------------------------------------------------
consensus_7520#0 TGGGTTTTTTTTAAAATTGGTTATGAAACTGGATGGGTGGATTTGTTAAAGCACACTAAT 360
consensus_7520#1 ------------------------------------------------------------
consensus_7520#0 GTGGAGCCTATAATTAACAAAGACAATCAAGAAATGCTAATTATACTTCCAAGAGATTAT 420
consensus_7520#1 ----GTTCTACACCTTTTCTTCATGAT----ATATACTAGCTTT--TGTCAACATTTTTA 50
*** * * * ** * ** *** * * * *** * **
consensus_7520#0 TCAGAAAAAGGGTATAGGGGTATAGCGAAACTAAAAATTCCAATATTACCGTCAGAGACT 480
consensus_7520#1 TAAAGCAAAG----TAAAATCATTTTATTTCCAG-----CCAATATTACCGTCAGAAACT 101
* * **** ** ** * * ***************** ***
consensus_7520#0 CTTCAATTACCCAATTGGATTATTACGCCGAATTTTGATGTGAAGGAAATACTACATTAT 540
consensus_7520#1 CTTCAATTACCCAATTGGATTATTACGCCGAATTTTGATGTGAAGGAAATACTACATTAT 161
************************************************************
consensus_7520#0 GATGGTAATGATGAAGTCATTTTTATTGGAACAGGACCTGACTCCAAAAACTCTCATGTT 600
consensus_7520#1 GATGGTAATGATGAAGTCATTTTTATTGGAACAGGACCTGACTCCAAAAACTCTCATGTT 221
************************************************************
consensus_7520#0 TATTGGACTTCACAATCCAGAGGTAATATGACTTGTCTTACTTGTGAAAATGTGAATAAT 660
consensus_7520#1 TATTGG----------TAAGTGGGAATAT--------TTAATTATGGGA-TGCAGGCCAA 262
****** ** ** ***** *** ** ** * ** *
consensus_7520#0 ACATATAATTGGGCAGAAGTTCTGGCAAACGGAAAGTATTTAGTTCAAGATGTTCGAGGC 720
consensus_7520#1 GTAAATGTAAAGACA--------------------------------------------- 277
* ** * **
consensus_7520#0 TCGGGTACTCCCAAAACTTTTCTAAAAAGAATTATTAGGAATTTTACAGAAACGAATAAT 780
consensus_7520#1 ------------------------------------------------------------
consensus_7520#0 TTCACGGTTACCACAGAAATAATCAAGTATTTTGT 815
consensus_7520#1 -----------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||