These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7527#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [GTTTCAAATAAATGAACTATGGTGTACTTGAGAACATCTTCAATATCATCCGAAATTAACACGACGGACTACACCGCGAATTCGTGTATGGAGGACAGCTCAAAGATGCTTTCGAAGTGAGGACCGGTGTCAGACAAGGCTGTTTACTCTCGCACTTCCATTTTCTTCTGGTGGTTGACCGGATTATGAAGACCTTCATATCACCGGGAAAGCACGGCATTCAATGGACAGTTTGCATACAACTAAACGATTTGGGCTTCGCAGATTACTTGGCCTTTCTATCTCATACATACGAACAAATGAAAATGAAGACAACTAGTGTAGCGGCAGCCTCTGCAGCAGTAGGCCTCAACATACACAAAGGAAAAAGCATGATCCTCAAATACAACACGGAGAACACCAAATCAATCACACTTAATGGAGAAGCTCTAGAAGATGTGGAATCTTTCACGTACCTGGGAAGCATCATCGATGAACAATGAGGATCTGATACAGACGTAAAGGCAAGGATCGGCAAATCAAGGACAGCATCCCTACAGTTGTAGAACATATGGAACCCANNAACACCCTTAACCAATATCAAAGTGACAATCTTNCATACG] [+] EMBL CD124247 [GTTTCAAATAAATGAACTATGGTGTACTTGAGAACATCTTCAATATCATCCGAAATTAACACGACGGACTACACCGCGAATTCGTGTATGGAGGACAGCTCAAAGATGCTTTCGAAGTGAGGACCGGTGTCAGACAAGGCTGTTTACTCTCGCACTTCCATTTTCTTCTGGTGGTTGACCGGATTATGAAGACCTTCATATCACCGGGAAAGCACGGCATTCAATGGACAGTTTGCATACAACTAAACGATTTGGGCTTCGCAGATTACTTGGCCTTTCTATCTCATACATACGAACAAATGAAAATGAAGACAACTAGTGTAGCGGCAGCCTCTGCAGCAGTAGGCCTCAACATACACAAAGGAAAAAGCATGATCCTCAAATACAACACGGAGAACACCAAATCAATCACACTTAATGGAGAAGCTCTAGAAGATGTGGAATCTTTCACGTACCTGGGAAGCATCATCGATGAACAATGAGGATCTGATACAGACGTAAAGGCAAGGATCGGCAAATCAAGGACAGCATCCCTACAGTTGTAGAACATATGGAACCCANNAACACCCTTAACCAATATCAAAGTGACAATCTTNCATACG] consensusID : consensus_7527#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence [TGCCAACAGAGTTAGTAATACAGTTGTTAGGAAGGTAAGGATGGCAAATTGATTAATGATCAGTTGAGATGGCCGGAACGTGTTACGTATGCCCAACCGCCGACGTGCAATGCTTTATGGTGTAGGAGTTAGTAGAAAGAAAGCTAGAGGCGGCCAAACCAAGACGTAGCACATCCGTGAAATCAACGACAATTGGACTGAGCCATGCGGGTAGGTTGGGATTCGCGAGATGATAGCAATTGATGGTTAAAGACCTTGAATGACATGGCTCAAAATCGTTTGCAATGGCGNAAGTTCATCCACTGTTTGTGCTCTCCCAAATTATAATCTGAATTCTTTATATCAATATTTTTTTTTTCTTTCCAAATTTATTTCACTGGATTATACTCCTTGAATAATATCTTCAAACCCTAATCTTTCACGTTAATGCCTATACTCTTACTGCTTTTACCACACGGGATTTTGATCG] [+] EMBL CD152924 [TGCCAACAGAGTTAGTAATACAGTTGTTAGGAAGGTAAGGATGGCAAATTGATTAATGATCAGTTGAGATGGCCGGAACGTGTTACGTATGCCCAACCGCCGACGTGCAATGCTTTATGGTGTAGGAGTTAGTAGAAAGAAAGCTAGAGGCGGCCAAACCAAGACGTAGCACATCCGTGAAATCAACGACAATTGGACTGAGCCATGCGGGTAGGTTGGGATTCGCGAGATGATAGCAATTGATGGTTAAAGACCTTGAATGACATGGCTCAAAATCGTTTGCAATGGCGNAAGTTCATCCACTGTTTGTGCTCTCCCAAATTATAATCTGAATTCTTTATATCAATATTTTTTTTTTCTTTCCAAATTTATTTCACTGGATTATACTCCTTGAATAATATCTTCAAACCCTAATCTTTCACGTTAATGCCTATACTCTTACTGCTTTTACCACACGGGATTTTGATCG] consensusID : consensus_7527#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence [CCCATCACTCCGTCGAAGACGTATCACCAACCCGGAAATCACAACAGTTTACAATCACCTCACCCCACTTCCCATTTCCAGCTTGTTGTTGTTGGTAGTGGTAATAACAATAACAACACCTCCAACAAACTACACCACCAGCAAAACACAACATTCCCACTTACACACCATCTTAATCTCTTCTTAATTCATCACGAAGCAGTTTATAAAACACTGGAGGAACGAATGACTGAGGGAAGTATTGCACAGTTGTACAGTGAAGGAGGACAATGAATACTGGAGGCGATGTACACGGACCGGAGATCGTGGGAATTGAAGTGTAAATGTGTTAGTGGGTATCGAGCGTGTTGGTCCCACTGATTGAATTGTGTTAGTGGTT] [+] EMBL CD134406 [CCCATCACTCCGTCGAAGACGTATCACCAACCCGGAAATCACAACAGTTTACAATCACCTCACCCCACTTCCCATTTCCAGCTTGTTGTTGTTGGTAGTGGTAATAACAATAACAACACCTCCAACAAACTACACCACCAGCAAAACACAACATTCCCACTTACACACCATCTTAATCTCTTCTTAATTCATCACGAAGCAGTTTATAAAACACTGGAGGAACGAATGACTGAGGGAAGTATTGCACAGTTGTACAGTGAAGGAGGACAATGAATACTGGAGGCGATGTACACGGACCGGAGATCGTGGGAATTGAAGTGTAAATGTGTTAGTGGGTATCGAGCGTGTTGGTCCCACTGATTGAATTGTGTTAGTGGTT] consensusID : consensus_7527#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence [TTTTTTTTTTTTTTTTTACAGGAAATTTCTATTGGCAGCAAATGCGCATATGGCAGAAATACATCTACACGTACAGAACTTAAAGAGAAAATATATCCGTCAAATCAAGAACAGATATATAACAGTAAAAAGTAACCATAAAACTGGGAACAATTGTGACAATTCAAAGTTAAGAACACTAATTATAATTAATTATGAAGTTAAGGGATATTATAACCGAACGTATTAATGAGCATCCGTAAGTGCAACAACTCCGGGTAATTGTTTACCTTCGAGAATTCAAGACTAGCACCACCACCAGTACTGACATGACTAACTTTGTCTTCTGTGTCCCATTTGGCGCAGCATGTTGCGGTGTCACCACCA] [+] EMBL AI395118 [TTTTTTTTTTTTTTTTTACAGGAAATTTCTATTGGCAGCAAATGCGCATATGGCAGAAATACATCTACACGTACAGAACTTAAAGAGAAAATATATCCGTCAAATCAAGAACAGATATATAACAGTAAAAAGTAACCATAAAACTGGGAACAATTGTGACAATTCAAAGTTAAGAACACTAATTATAATTAATTATGAAGTTAAGGGATATTATAACCGAACGTATTAATGAGCATCCGTAAGTGCAACAACTCCGGGTAATTGTTTACCTTCGAGAATTCAAGACTAGCACCACCACCAGTACTGACATGACTAACTTTGTCTTCTGTGTCCCATTTGGCGCAGCATGTTGCGGTGTCACCACCA] consensusID : consensus_7527#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 213 fasta sequence [TATTTCACTTCCACCCAAGTCAACCTTCAGGCACTAGTTTTTTTTCAGACAATGGTCCGATTTCCAGTGAATTTCCATTCAAATTAGAAACACTGGATACAGCCTTGACAGATGGTAAATGATATTGTTGGTTTACTATTTGTAAAAAGACATTAATTAACTTGACTAACACCCAAGAAGTAGCTCCTGTTGAATAACTGATTCTTTTAACGA] [+] EMBL CD124581 [TATTTCACTTCCACCCAAGTCAACCTTCAGGCACTAGTTTTTTTTCAGACAATGGTCCGATTTCCAGTGAATTTCCATTCAAATTAGAAACACTGGATACAGCCTTGACAGATGGTAAATGATATTGTTGGTTTACTATTTGTAAAAAGACATTAATTAACTTGACTAACACCCAAGAAGTAGCTCCTGTTGAATAACTGATTCTTTTAACGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7527#0 GTTTCAAATAAATGAACTATGGTGTACTTGAGAACATCTTCAATATCATCCGAAATTAAC 60 consensus_7527#4 ------------------------------------------------------------ consensus_7527#3 ------------------------------------------------------------ consensus_7527#1 ---------------------------------------------------TGCCAACAG 9 consensus_7527#2 ------------------------------------------------------------ consensus_7527#0 ACGACGGACTACACCGCGAATTCGTGTATGGAGGACAGCTCAAAGATGCTTTCGAAGTGA 120 consensus_7527#4 -----------------------------------------------------------T 1 consensus_7527#3 ------------------------------------TTTTTTTTTTTTTTTTTACAGGAA 24 consensus_7527#1 AGTTAGTAATACAGTTGTTAGGAAGGTAAGGATGGCAAATTGATTAATGATCAGTTGAGA 69 consensus_7527#2 --------------------CCCATCACTCCGTCGAAGACGTATCACCAACCCGGAAATC 40 consensus_7527#0 GGACCGGTGTCAGACAAGGCTGTTTACTCTCGCACTTCCATTTT-CTTCTGGTGGTTGAC 179 consensus_7527#4 ATTTCACTTCCACCCAAGTCAACCT--TCAGGCACTAGT-TTTT-TTTCAGACAATGGTC 57 consensus_7527#3 ATTTCTATTGGCAGCAAATGCGCATA---TGGCAGAAAT-ACAT-CTACACGTACAGAAC 79 consensus_7527#1 TGGCCGGAACGTGTTACGTATGCCCAACCGCCGACGTGCAATGC-TTTATGGTGTAGGAG 128 consensus_7527#2 ACAACAGTTTACAATCACCTCACCCCACTTCCCATTTCCAGCTTGTTGTTGTTGGTAGTG 100 * * * consensus_7527#0 CGGATTATGAAGACCTTCATATCACCGGGAAAGCACGGCATT-CAATGGACAGTTTGCAT 238 consensus_7527#4 CGATTTCCAGTGAATTTCCATTCAAATTAGAAACACTGGATA-CAGCC-----TTGACAG 111 consensus_7527#3 TTAAAGAGAAAATATATCCGTCAAATCAAGAACAGATATATAACAGTAAAAAGTAACCAT 139 consensus_7527#1 TTAGTAGAAAGAAAGCTAGAGGCGGCCAAACCAAGACGTAGCACATCCGTGAAATCAACG 188 consensus_7527#2 GTAATAACAATAACAACACCTCCAACAAACTACACCACCAGCAAAACACAACATTCCCAC 160 * * consensus_7527#0 ACAACTA--AACGATTTGGGCTTCGCAGATTACTTGGCCTTTCTATCTCATACATACGAA 296 consensus_7527#4 ATGG-TA--AATGATATTG--------------TTGGT-TTACTATTT-GTAAAAAGACA 152 consensus_7527#3 AAAACTGGGAACAATTGTGACAATTCAA---AGTTAAGAACACTAATT-----ATAATTA 191 consensus_7527#1 ACAATTG-----GACTGAGCCATGCGGGTAGGTTGGGATTCGCGAGATGATAGCAATTGA 243 consensus_7527#2 TTACACA----CCATCTTAATCTCTTCTTAATTCATCACGAAGCAGTTTATAAAACACTG 216 * * * consensus_7527#0 CAAATGAAAATGAAGACAACTAGTGTAGCGGCAGCCTCTGCAGCAGTAGGCCTCAACATA 356 consensus_7527#4 TTAATTAACTTGACTAACACCCAAGAAGTAGCTCCTGTTGAATAACTGATTCTTTTAACG 212 consensus_7527#3 ATTATGAAGTTAAGGGATATTATAACCGAACGTATTAATGAGCATCCGTAAGTGCAACAA 251 consensus_7527#1 TGGTTAAAGACCTTGAATGACATGGCTCAAAATCGT-TTGCAATGGCGNAAGTTCATCCA 302 consensus_7527#2 GAGGAACGAATGACTGAGGGAAGTATTGCACAGTTGTACAGTGAAGGAGGACAATGAATA 276 consensus_7527#0 CACAAAGGAAAAAGCATGATCCTCAAATACAACACGGAGAACACCAAATCAATCACACTT 416 consensus_7527#4 A----------------------------------------------------------- 213 consensus_7527#3 CTCCGGGTAATTGTTTACCTTCGAGAATTCAAGACTAGCACCACCACCAGTACTGACATG 311 consensus_7527#1 CTGTTTGTGCTCTCCCAAATTATAATCTGAATTCTTTATATCAATATTTTTTTTTTCTTT 362 consensus_7527#2 CTGGAGGCGATGTACACGGACCGGAGAT----CGTGGGAATTGAAGTGTAAATGTGTTAG 332 consensus_7527#0 AATGGAGAAGCTCTAGAAGATGTGGAATCTTTCACGTACCTGGGAAGCATCATCGATGAA 476 consensus_7527#4 ------------------------------------------------------------ consensus_7527#3 ACTAACTTTGTCTTCTGTGTCCCATTTGGCGCAGCATGTTGCGGTGTCACCACCA----- 366 consensus_7527#1 CCAAATTTATTTCACTGGATTATACTCCTTGAATAATATCTTCAAACCCTAATCTTTCAC 422 consensus_7527#2 TGGGTATCGAGCGTGTTGGTCCCACTGATTGAATTGTGTTAGTGGTT------------- 379 consensus_7527#0 CAATGAGGATCTGATACAGACGTAAAGGCAAGGATCGGCAAATCAAGGACAGCATCCCTA 536 consensus_7527#4 ------------------------------------------------------------ consensus_7527#3 ------------------------------------------------------------ consensus_7527#1 GTTAATGCCTATACTCTTACTGCTTTTACCACACGGGATTTTGATCG------------- 469 consensus_7527#2 ------------------------------------------------------------ consensus_7527#0 CAGTTGTAGAACATATGGAACCCANNAACACCCTTAACCAATATCAAAGTGACAATCTTN 596 consensus_7527#4 ------------------------------------------------------------ consensus_7527#3 ------------------------------------------------------------ consensus_7527#1 ------------------------------------------------------------ consensus_7527#2 ------------------------------------------------------------ consensus_7527#0 CATACG 602 consensus_7527#4 ------ consensus_7527#3 ------ consensus_7527#1 ------ consensus_7527#2 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||