These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7594#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 607 fasta sequence [AAGTTAAATCATGTAGGAGGCAGTCAATTGAACTAATAGTAGAATACACATTATTAAAATGTGTCACCAAAACTATAACCACTGNCTCTACTATTTAAACTTTGTCGACTTCCATGAAAACTGAATTGTTCAAAGTATGGTCCATCGACAATTCGATTCATATTATCTTCATTATCGTTTGGAGGAGTCAGATCAACTGATGTATCCTTGAATTCATCTGGGCCATATTTTGTGTCTTTTTCATCGACCACATCTGGTTTCCATGGTGGTTGAATATCTTTTCTTATTAAACGGTCCCAATCGACTGATGCAAAAAACAAATGTGCCATAACCTCCAAAACATCTTGTATTCCACCACCTAGTCGACTTGTTGGATCTTTAATTAAAAGTCTAGAC-AGATATCTTGGGCTGGGTGTGAAAGACGAGCTGGGAAGGGGACATTTTCTTGCAGTATTAACTCAAATAGGACTTCATG-CCACTTGAAT-AAATGGT-AACG-CCACACATCATTTTCGTGCCGATT-CTGCAGCCGGGGSCCCTCCAATCAACTGAACGCCCATAATCGTTATCCAACAGAACTTCAGGTGCTAAATATTCCCGTGTACCACAN] [+] EMBL SMAA69931 [AAGTTAAATCATGTAGGAGGCAGTCAATTGAACTAATAGTAGAATACACATTATTAAAATGTGTCACCAAAACTATAACCACTGNCTCTACTATTTAAACTTTGTCGACTTCCATGAAAACTGAATTGTTCAAAGTATGGTCCATCGACAATTCGATTCATATTATCTTCATTATCGTTTGGAGGAGTCAGATCAACTGATGTATCCTTGAATTCATCTGGGCCATATTTTGTGTCTTTTTCATCGACCACATCTGGTTTCCATGGTGGTTGAATATCTTTTCTTATTAAACGGTCCCAATCGACTGATGCAAAAAACAAATGTGCCATAACCTCCAAAACATCTTGTATTCCACCACCTAGTCGACTTGTTGGATCTTTAATTAAAAGTCTAGAC AGATATCTTGGGCTGGGTGTGAAAGACGAGCTGGGAAGGGGACATTTTCTTGCAGTATTAACTCAAATAGGACTTCATG CCACTTGAAT AAATGGT AACG CCACACATCATTTTCGTGCCGATT CTGCAGCCGGGGSCCCT ] [+] EMBL CD155923 [ TTTGTCGACTTCCATGAAAACTGAATTGTTCAAAGTATGGTCCATCGACAATTCGATTCATATTATCTTCATTATCGTTTGGAGGAGTCAGATCAACTGATGTATCCTTGAATTCATCTGGGACATATTTTGTGTCTTTTTCATCGACCACATCTGGTTTCCATGGTGGTTGAATATCTTTTCTTATTAAACGATCCCAATCGACTGATGCAAAAAACAAATGTGCCATAACCTCCAAAACATCTTGTATTCCACCACCTAGTCGACTTGGTGGATTCTTAATTAAAAGTCTAGACAAGATATCTTGGGCTGGGTGTGAAAGACGAGCTGGGAAGGAGACATTTTCTTGCAGTATTAACTCAAATAAGACTTCATGATCACTTGAATAAAATGGTAAACGTCCACACATCA TTTCATAC ATTACTACA CCAAGGCCCCACCAATCAACTGAACGCCCATAATCGTTATCCAACAGAACTTCAGGTGCTAAATATTCCCGTGTACCACAN] consensusID : consensus_7594#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [GGCCTCGAGGCCAGAATCGGCACGAGGTAGAGTCAGTGGTTATAGTTTTGGTGACACATTTTAATAATGTGTATTCTACTATTAGTTCAATTGACTGCCTCCTACATGATTTAACTTTCTATGTACAAAAAAGAAGAAGAAATGAAGAGAATCTTATTATAACTCATACTTTTCACATAGATGAATATCTGGACAGATAGAAAACATTGTAGAGCCTGGAATTGCATGTGTGTATATCATCTAGTTCAATGTTTCCGATTATGAAATATGTATAGATTTATTTTCATATTCATTCATTTTCACCTGGTTTTGCTTATTTTTTTTCTTTTCTTTCTTGATATTATGATATAAATTTTATGTGAATTAAATATGTTCGGTTTTAATTGTTCTTAGAGATATGTAATTTTTGTCTACTATTATTTTTCATTGAAACTATTATTATTTCATTGCCTCA] [+] EMBL CD084024 [GGCCTCGAGGCCAGAATCGGCACGAGGTAGAGTCAGTGGTTATAGTTTTGGTGACACATTTTAATAATGTGTATTCTACTATTAGTTCAATTGACTGCCTCCTACATGATTTAACTTTCTATGTACAAAAAAGAAGAAGAAATGAAGAGAATCTTATTATAACTCATACTTTTCACATAGATGAATATCTGGACAGATAGAAAACATTGTAGAGCCTGGAATTGCATGTGTGTATATCATCTAGTTCAATGTTTCCGATTATGAAATATGTATAGATTTATTTTCATATTCATTCATTTTCACCTGGTTTTGCTTATTTTTTTTCTTTTCTTTCTTGATATTATGATATAAATTTTATGTGAATTAAATATGTTCGGTTTTAATTGTTCTTAGAGATATGTAATTTTTGTCTACTATTATTTTTCATTGAAACTATTATTATTTCATTGCCTCA] consensusID : consensus_7594#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence [TTGTTCAAAGTATGGTCCATCGACAATTCGATTCATATTATCTTCATTATCGTTTGGAGGAGTCAGATCAACTGATGTATCCTTGAATTCATCTGGGACATATTTTGTGTCTTTTTCATCGACCACATCTGGTTTCCATGGTGGTTGAATATCTTTTCTTATTAAACGATCCCAATCGACTGATGCAAAAAACAAATGTGCCATAACCTCCAAAACATCTTGTATTCCACCACCTAGTCGACTTGTTGGATCTTTAATTAAAAGTCTAGACAAGATATCTTGGGCTGGGTGTGAAAGACGAGCTGGGAAGGAGACATTTTCCTAAAGTAATAAAAATGGCAAAATATGATATAATCTGAATGACTACTACTGCCAAAATATTTGCATAAACATTAAGATTATTTGTAATAACCTAATTGATACCTAACTACA] [-] EMBL AI975399 [TTGTTCAAAGTATGGTCCATCGACAATTCGATTCATATTATCTTCATTATCGTTTGGAGGAGTCAGATCAACTGATGTATCCTTGAATTCATCTGGGACATATTTTGTGTCTTTTTCATCGACCACATCTGGTTTCCATGGTGGTTGAATATCTTTTCTTATTAAACGATCCCAATCGACTGATGCAAAAAACAAATGTGCCATAACCTCCAAAACATCTTGTATTCCACCACCTAGTCGACTTGTTGGATCTTTAATTAAAAGTCTAGACAAGATATCTTGGGCTGGGTGTGAAAGACGAGCTGGGAAGGAGACATTTTCCTAAAGTAATAAAAATGGCAAAATATGATATAATCTGAATGACTACTACTGCCAAAATATTTGCATAAACATTAAGATTATTTGTAATAACCTAATTGATACCTAACTACA] consensusID : consensus_7594#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 417 fasta sequence [TGGATCTTTAATTAAAAGTCTAGACAAGATATCTTGGGCTGGGTGTGANAGACGAGCTGGGAAGGAGACATTTTCTTGCAGTATTAACTCAAATAAGACTTCATGATCACTTGAATAAAATGGTAAACGTCCACACATCATTTCATACATTACTACACCAAGGCCCCACCAATCAACTGAACGCCCATAATCGTTATCCAACAGAACTTCAGGTGCTAAATATTCCGGTGTACCACAAAATGTTTTAGTTGATGCACCATAGTACATATCTTCTTTGCAAAGACCAAAATCAGCGATTTTTATATGACCATCTTTATCCAACAATAAATTTTCCAATTTAAGATCCCTATAAACAACATTCTGGTGATGTAAATAACCTAAAGCCAGAGTAATTTCTGCACCATAAAATTTAGCTCT] [-] EMBL AI976072 [TGGATCTTTAATTAAAAGTCTAGACAAGATATCTTGGGCTGGGTGTGANAGACGAGCTGGGAAGGAGACATTTTCTTGCAGTATTAACTCAAATAAGACTTCATGATCACTTGAATAAAATGGTAAACGTCCACACATCATTTCATACATTACTACACCAAGGCCCCACCAATCAACTGAACGCCCATAATCGTTATCCAACAGAACTTCAGGTGCTAAATATTCCGGTGTACCACAAAATGTTTTAGTTGATGCACCATAGTACATATCTTCTTTGCAAAGACCAAAATCAGCGATTTTTATATGACCATCTTTATCCAACAATAAATTTTCCAATTTAAGATCCCTATAAACAACATTCTGGTGATGTAAATAACCTAAAGCCAGAGTAATTTCTGCACCATAAAATTTAGCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7594#0 AAGTTAAATCATGTAGGAGGCAGTCAATTGAACTAATAGTAGAATACACATTATTAAAAT 60 consensus_7594#2 ------------------------------------------------------------ consensus_7594#3 ------------------------------------------------------------ consensus_7594#1 ------------------------------------------------------------ consensus_7594#0 GTGTCACCAAAACTATAACCACTGNCTCTACTATTTAAACTTTGTCGACTTCCATGAAAA 120 consensus_7594#2 ------------------------------------------------------------ consensus_7594#3 ------------------------------------------------------------ consensus_7594#1 -------------------------------------------------GGCCTCGAGGC 11 consensus_7594#0 CTGAATTGTT-CAAAGTATGGTCCATCGACA-ATTCGATTCATATTATCTTCATTATCGT 178 consensus_7594#2 -----TTGTT-CAAAGTATGGTCCATCGACA-ATTCGATTCATATTATCTTCATTATCGT 53 consensus_7594#3 --------------TGGATCTTTAATTAA-A-AGTCTAGACAAGATATCTTGGGCTGGGT 44 consensus_7594#1 CAGAATCGGCACGAGGTAGAGTCAGTGGTTATAGTTTTGGTGACACATTTT-AATAATGT 70 * * * * * * * ** ** ** consensus_7594#0 TTGGAGGA--GTCAGATCAACTGATGTATCCTTGAA---TTCATCTGGGCCATATTTTGT 233 consensus_7594#2 TTGGAGGA--GTCAGATCAACTGATGTATCCTTGAA---TTCATCTGGGACATATTTTGT 108 consensus_7594#3 GTGANAGACGAGCTGGGAAGGAGACATTTTCTTGCAGTATTAACTCAAATAAGACTTCAT 104 consensus_7594#1 GTATTCTACTATTAGTTCAATTGACTGCCTCCTACA----TGATTTAACTTTCTATGTAC 126 * * * * ** * * * * * * consensus_7594#0 GTCTTTTTCATCGACCACATCTGGTTTCCATG-GTGGTTGAATATCTTTTCTTATTAAAC 292 consensus_7594#2 GTCTTTTTCATCGACCACATCTGGTTTCCATG-GTGGTTGAATATCTTTTCTTATTAAAC 167 consensus_7594#3 GATCACTTGAATAAA-ATGGTAAACGTCCACACATCATTTCATACATTACTACACCAAGG 163 consensus_7594#1 AAAAAAGAAGAAGAA-ATGAAGAGAATCTTATTATAACT-CATAC-TTTTCACATAGATG 183 * * ** * * *** ** * * consensus_7594#0 GGTC-CCAATCGACTGATGCAAAAAACAAATGTGCCATAACCTCCAAAACATCTTGTATT 351 consensus_7594#2 GATC-CCAATCGACTGATGCAAAAAACAAATGTGCCATAACCTCCAAAACATCTTGTATT 226 consensus_7594#3 CCCCACCAATCAACTG------AACGCCCATAATCGTTATCCAACAGAACTTCAGGTGCT 217 consensus_7594#1 AATATCTGGACAGATAG---AAAACATTGTAGAGCCTGGAATTGCATG--TGTGTATATC 238 * * * ** * ** * consensus_7594#0 CCACCACCTAGTCGACTTGTTGGATCTTTAATTAAAAGTCTAGACA-GATATCTTGGGCT 410 consensus_7594#2 CCACCACCTAGTCGACTTGTTGGATCTTTAATTAAAAGTCTAGACAAGATATCTTGGGCT 286 consensus_7594#3 AAATATTCCGGTGTACCACAAAATGTTTTAGTTGATGCACCATAGTACATATCTTCTTTG 277 consensus_7594#1 ATCTAGTTCAATGTTTCCGATTATGAAATATGTATAGATTTATTTT-CATAT-TCATTCA 296 * ** * * **** * consensus_7594#0 GGGTGTGAAAGACGAGC---TGGGAAGGGGACATTTTCTTGCAGTATTAACTCAAATAGG 467 consensus_7594#2 GGGTGTGAAAGACGAGC---TGGGAAGGAGACATTTTCCTAAAGTAATAAAAATGGCAAA 343 consensus_7594#3 CAAAGACCAAAATCAGCGATTTTTATATGACCATCTTTATCCAACAATAAATTTTCCA-- 335 consensus_7594#1 TTTTCACCTGGTTTTGCTTATTTTTTTTCTTTTCTTTCTTGATATTATGATATAAATTTT 356 ** * ** * * * consensus_7594#0 ACTTCATGCCACTTGAATAAATGGTA-ACGCCACACATCATTTTCGTGCCGATTCTGCAG 526 consensus_7594#2 ATATGATATAATCTGAATGACTACTA-CTGCCAAA----ATATTTGCATAAACATTAAGA 398 consensus_7594#3 ATTTAAGATCCCTATAAACAACATTC-TGGTGATG-----TAAATAACCTAAAGCCAGAG 389 consensus_7594#1 ATGTGAATTAAATATGTTCGGTTTTAATTGTTCTTAGAGATATGTAATTTTTGTCTACTA 416 * * * * * * consensus_7594#0 CCGGGGSCCCTCCAATCAACTGAACGCCCATAATCGTTATCCAACAGAACTTCAGGTGCT 586 consensus_7594#2 TTATTTGTAAT--AACCTAATTGATACCTAACTACA------------------------ 432 consensus_7594#3 TAATTTCTGCACCATAAAATTTAGCTCT-------------------------------- 417 consensus_7594#1 TTATTTTTCATTGAAACTATTATTATTTCATTGCCTCA---------------------- 454 * * * consensus_7594#0 AAATATTCCCGTGTACCACAN 607 consensus_7594#2 --------------------- consensus_7594#3 --------------------- consensus_7594#1 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||