These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7598#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 799 fasta sequence [TTAGCTTTTTTATTTAAATTGCCGATGCAAACCATTATTTCTTAGTGCATAACGCTAGAAGTGTGTTACAGTTAGGAAACAAACACATGAAAAGAGTTTCTTGATGTCGAATGACATCTTATGATGCAAAAATATACATCTAGAACTTCGCACGGCAGTTACGTAAGTAAATATAATCTATTGACAGAGCGGTAATCGCAGAAGATATATTGAAGAACTTCATGGTGGACCTCAATACTAATACATTCACAATTACTGTAAAGTTGTAATAGCATTTAGCATTCATTTACGACGACCCATGACAAGTTTTAGTTTCCTGCGGTCCTTGGAAGGTATTAAATCATCTACATCTTCCTGTAATGACAATTTATCTGGTGTTTTGTCATCTTCACTTAAAGCATAAGTTGAACATTTA-TAGCTCTCTAACTTTCTTTTCTTTTCATTCAGAACAGCTGAAAACTTCGACAGAAGGATAA-TTTCTTTG-TCA-TCTA-TCTGAGAAACCACTTCTTCA-TATTTCTTTACGGACACATCAGCCAAAGACTTAAGCTTCTCGTTTTCTCTCTCAAAATCACTGCAGCA-TAAAATCGA-TTCTTTGAGATTATTTGCGATTAAACCCGTCAA-TTCGCTGAGTGA-TTCC-A--TGGATTATATGAAGGTTTTAAGTAAAAAGATCCGAAGATGATTTTAATGCCTTTCTTAATTTCTTTGGACCACACGAAATTTAAAACCGCTCCCTCTTCTCTCAAAGTAAAGCAGCTAGATGGGTCAGAAGAACCCTCGTGCCGAATCTTGGCCTCGGAGG] [+] EMBL CD076195 [TTAGCTTTTTTATTTAAATTGCCGATGCAAACCATTATTTCTTAGTGCATAACGCTAGAAGTGTGTTACAGTTAGGAAACAAACACATGAAAAGAGTTTCTTGATGTCGAATGACATCTTATGATGCAAAAATATACATCTAGAACTTCGCACGGCAGTTACGTAAGTAAATATAATCTATTGACAGAGCGGTAATCGCAGAAGATATATTGAAGAACTTCATGGTGGACCTCAATACTAATACATTCACAATTACTGTAAAGTTGTAATAGCATTTAGCATTCATTTACGACGACCCATGACAAGTTTTAGTTTCCTGCGGTCCTTGGAAGGTATTAAATCATCTACATCTTCCTGTAATGACAATTTATCTGGTGTTTTGTCATCTTCACTTAAAGCATAAGTTGAACATTTA TAGCTCTCTAACTTTCTTTTCTTTTCATTCAGAACAGCTGAAAACTTCGACAGAAGGATAA TTTCTTTG TCA TCTA TCTGAGAAACCACTTCTTCA TATTTCTTTACGGACACATCAGCCAAAGACTTAAGCTTCTCGTTTTCTCTCTCAAAATCACTGCAGCA TAAAATCGA TTCTTTGAGATTATTTGCGATTAAACCCGTCAA TTCGCTGAGTGA TTCC A TGGA TATATGAA ] [-] EMBL CD082599 [ ACGGCAGTTACGTAAGTAAATATAATCTATTGACAGAGCGGTAATCGCAGAAGATATA TGAAGAACTTCATGGTGGACCTCAATACTAATACATTCACAATTACTGTAAAGTTGTAATAGCATTTAGCATTCATTTACGACGACCCATGACAAGTTTTAGTTTCCTGCGGTCCTTGGAAGGTATTAAATCATCTACATCTTCCTGTAATGACAATTTATCTGGTGTTTTGTCATCTTCACTTAAAGCATAAGTTGAACATTTA TAGCTCTCTAACTTTCTTTTCTTTTCATTCAGAACAGCTGAAAACTTCGACAGAAGGATAA TTTCTTTG TCA TCTA TCTGAGAAACCACTTCTTCA TATTTCTTTACGGACACATCAGCCAAAGACTTAAGCTTCTCGTTTTCTCTCTCAAAATCACTGCAGCA TAAAATCGA TTCTTTGAGATTATTTGCGATTAAACCCGTCAA TTCGCTGAGTGA TTCCAA TGGATTATATGAAGGTTTTAAGTAAAAAGATCCGAAGATGATTTTAATGCCTTTCTTAATTTCTTTGGACCACACGAAATTTAAAACCGCTCCCTCTTCTCTCAAAGTAAAGCAGCTAGATGGGTCAGAAGAACCCTCGTGCCGAATCTTGGCCTCGGAGG] [-] EMBL CD171367 [ CCTGTATTGACATTTTTTC GGTGTTTTGTCTTCTTCACTTAAAGCTTAAGTTGAAC TTTATTAGCTCTCTAACTATCTTATC TTTCATTCAGAACAGCTGAAAACTTCGACAGAAGGATAATTTTCTTTGTTCATTCTATTCTGAGAAACCACTTCTTCAGTTTTTCTTTACGGACACATCAGCCAAAGACTTAAGCTTCTCGTTTTCTCTCTCAAAATCACTGCAGCATTAAAATCGATTTCTTTGAGATTATTTGCGATTAAACCCGTCAATTTCGCTGAGTGATTTCC AAGTGGATTATATGTAGGTTTTAAGTAAAAAGATCCGAAGATGATTTTAATGCCTTTCTTAATTTCTTTGGACCACACGAAATTTAAAACCGCTCCCTCTTCTCTCAAAG ] [-] EMBL CD171443 [ TAA TTTCTNTG TCA TCTA TCTGAGAGACCACTTCTTCA TATATCTTTACGGACACATCAGCCAAAGACTTAAGCTTCTCGTTTTCTCTCTCAAAATCACTGCAGCA TAAAATCGA TCCTTTGAGATTATTTGCGATTAAACCCGTCAA TTCGCTGAGTGA TTCCAA TGGATTATATGAAGGTTTTAAGTAAAAAGATCCGAAGATGATTTTAATGCCTTTCTTAATTTCTTTGGACCACACGAAATTTAAAACCGCTCCCTCTTCTCTCAAAG ] consensusID : consensus_7598#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [TATATAGATAAAAGCTGATTAACAGCAAGATATACAGCAGTTCGATGTAATAATAACAGAAAACTACGAAGATTCGTATATCACATGGCCGGGGATACGTACATACTTCCTCTAGGCTCAGGTATACTATAATTTTTAGCATTCATTTACGACGACCCGTGACAAGTTTTAGTTTTCTGCGGTCCTTGGAAGGTATTAAATCATCTACATCTTCCTGTAATGACAATTTATCTGGTGTTTTGTCATCTTCACTTAAAGCATAAGTTGGACATTTATAGCTCTCTAACTTTCTTTTCTTTTCATTCAGAACAGCTGAAAACTTCGACAGAAGGATAATTTCTTTGTCATCTATCTGAGAAACCACTTCTTCATATCTCTTTACGGACACATCAGCCCAAGACTTAAGCATCTCGTTTTCTCTCTCAAAATCACTGCAGCATAAAATC] [+] EMBL CD140584 [TATATAGATAAAAGCTGATTAACAGCAAGATATACAGCAGTTCGATGTAATAATAACAGAAAACTACGAAGATTCGTATATCACATGGCCGGGGATACGTACATACTTCCTCTAGGCTCAGGTATACTATAATTTTTAGCATTCATTTACGACGACCCGTGACAAGTTTTAGTTTTCTGCGGTCCTTGGAAGGTATTAAATCATCTACATCTTCCTGTAATGACAATTTATCTGGTGTTTTGTCATCTTCACTTAAAGCATAAGTTGGACATTTATAGCTCTCTAACTTTCTTTTCTTTTCATTCAGAACAGCTGAAAACTTCGACAGAAGGATAATTTCTTTGTCATCTATCTGAGAAACCACTTCTTCATATCTCTTTACGGACACATCAGCCCAAGACTTAAGCATCTCGTTTTCTCTCTCAAAATCACTGCAGCATAAAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7598#0 TTAGCTTTTTTATTTAAATTGCCGATGCAAACCATTATTTCTTAGTGCATAACGCTAGAA 60 consensus_7598#1 ------------------------------------------------------------ consensus_7598#0 GTGTGTTACAGTTAGGAAACAAACACATGAAAAGAGTTTCTTGATGTCGAATGACATCTT 120 consensus_7598#1 ------------------------------------------------------------ consensus_7598#0 ATGATGCAAAAATATACATCTAGAACTTCGCACGGCAGTTACGTAAGTAAATATAATCTA 180 consensus_7598#1 ------------TATATAGATAAAAGCTGAT-------TAACAGCAAGATATACAGCAGT 41 **** * ** ** * * ** * * *** * consensus_7598#0 TTGACAGAGCGGTAATCGCAGAAGATATATTGAAGAACTTCATGGTGGACCTCAATACTA 240 consensus_7598#1 TCGATGTAATAATAACAGAAAACTACGAAGATTCGTATATCACA-TGGCCGGGGATACGT 100 * ** * *** * * * * * * * *** *** * **** consensus_7598#0 ATACATTCACAATTACTGTAAAGTTGTAATAGCATTTAGCATTCATTTACGACGACCCAT 300 consensus_7598#1 ACATACTTCCTCTAGGCTCAGGTATACTATAATTTTTAGCATTCATTTACGACGACCCGT 160 * * * * * * * * *** ************************ * consensus_7598#0 GACAAGTTTTAGTTTCCTGCGGTCCTTGGAAGGTATTAAATCATCTACATCTTCCTGTAA 360 consensus_7598#1 GACAAGTTTTAGTTTTCTGCGGTCCTTGGAAGGTATTAAATCATCTACATCTTCCTGTAA 220 *************** ******************************************** consensus_7598#0 TGACAATTTATCTGGTGTTTTGTCATCTTCACTTAAAGCATAAGTTGAACATTTATAGCT 420 consensus_7598#1 TGACAATTTATCTGGTGTTTTGTCATCTTCACTTAAAGCATAAGTTGGACATTTATAGCT 280 *********************************************** ************ consensus_7598#0 CTCTAACTTTCTTTTCTTTTCATTCAGAACAGCTGAAAACTTCGACAGAAGGATAATTTC 480 consensus_7598#1 CTCTAACTTTCTTTTCTTTTCATTCAGAACAGCTGAAAACTTCGACAGAAGGATAATTTC 340 ************************************************************ consensus_7598#0 TTTGTCATCTATCTGAGAAACCACTTCTTCATATTTCTTTACGGACACATCAGCCAAAGA 540 consensus_7598#1 TTTGTCATCTATCTGAGAAACCACTTCTTCATATCTCTTTACGGACACATCAGCCCAAGA 400 ********************************** ******************** **** consensus_7598#0 CTTAAGCTTCTCGTTTTCTCTCTCAAAATCACTGCAGCATAAAATCGATTCTTTGAGATT 600 consensus_7598#1 CTTAAGCATCTCGTTTTCTCTCTCAAAATCACTGCAGCATAAAATC-------------- 446 ******* ************************************** consensus_7598#0 ATTTGCGATTAAACCCGTCAATTCGCTGAGTGATTCCATGGATTATATGAAGGTTTTAAG 660 consensus_7598#1 ------------------------------------------------------------ consensus_7598#0 TAAAAAGATCCGAAGATGATTTTAATGCCTTTCTTAATTTCTTTGGACCACACGAAATTT 720 consensus_7598#1 ------------------------------------------------------------ consensus_7598#0 AAAACCGCTCCCTCTTCTCTCAAAGTAAAGCAGCTAGATGGGTCAGAAGAACCCTCGTGC 780 consensus_7598#1 ------------------------------------------------------------ consensus_7598#0 CGAATCTTGGCCTCGGAGG 799 consensus_7598#1 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||