These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7600#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 619 fasta sequence [TGGTGAGGGCTAGTGATGAGTGTGTGTGTGTGTGTGTAGCTCTTTCCACCGGTTGATGTTGGTGCTGCATCTTCAAGAACAACGCGCCTCAATGTTTCATGCTGTGATCTGCTAATGCACCTTGTTACTGGGTAGAACTAATCGACTCCTAAAATTTGTGACTAGTGGTATCATGTGTGGTGGTAGTGAAGACAGAAGATAGTTTGTGTTTTGCGAGTGTGGTAGTGTCACAATTATTATTAGAAATGGTGAAATATTTTGCACACAGTACTTATTTATTGCTGTTGTTTGAAGGTGATAAATAAATGGAGATCTGGTCAACTAACCGTTGACTTCAATGAGAGAAGACTTATGGTCATTTCGATTGTTTGGTACAATATGAATTTTTGGAATGAAGCAGTTTGGTAAAAATGAATGTTATACTGGTATAGCGGTTNTATCCATTGGTAGCTTTGGTTATCTGACTGATAGGTCTTGTTATTTCAACGGAATGCATTATGACCACAACTAACATGACGTCTCAATGATGTGTAAAATCCATGTTAAATGACTTTTGCAATTGCACGCTTTNTATTAACCTACCTATGAACATACTACTTACTTGATTACCTATGANACA] [+] EMBL CD068475 [TGGTGAGGGCTAGTGATGAGTGTGTGTGTGTGTGTGTAGCTCTTTCCACCGGTTGATGTTGGTGCTGCATCTTCAAGAACAACGCGCCTCAATGTTTCATGCTGTGATCTGCTAATGCACCTTGTTACTGGGTAGAACTAATCGACCCCTca ] [+] EMBL CD115328 [ TGTGTGTGTGTGTAGCTCTTTCCACCGGTTGATGTTGGTGCTGCATCTTCAAGAACAACGCGCCTCAATGTTTCATGCTGTGACCTGCTAATGCACCTTGTTACTGGGTAGAACTAATCGACTCCTAAAATTTGTGACTAGTGGTATCATGTGTGGTGGTAGTGAAGACAGAAGATAGTTTGTGTTTTGCGAGTGTGGTAGTGTCACAATTATTATTAGAAATGGTGAAATATTTTGCACACAGTACTTATTTATTGCTGTTGTTTGAAGGTGATAAATAAATGGAGATCTGGTCAACTAACCGTTGACTTCAATGAGAGAAGACTTATGGTCATTTCGATTGTTTGGTACAATATGAATTTTTGGAATGAAGCAGTTTGGTAAAAATGAATGTTATACTGGTATAGCGGTTNTATCCATTGGTAGCTTTGGTTATCTGACTGATAGGTCTTGTTATTTCAACGGAATGCATTATGACCACAACTAACATGACGTCTCAATGATGTGTAAAATCCATGTTAAATGACTTTTGCAATTGCACGCTTTNTATTAACCTACCTATGAACATACTACTTACTTGATTACCTATGANACA] [+] EMBL CD153891 [ TCTTCAAGAACAACGCGCCTCAATGTTTCATGCTGTGATCTGCTAATGCACCTTGTTACTGGGTAGAACTAATCGACTCCTAAAATTTGTGACTAGTGGTATCATGTGTGGTGGTAGTGAAGACAGAAGATAGTTTGTGTTTTGCGAGTGTGGTAGTGTCACAATTATTATTAGAAATGGTGAAATATTTTGCACACAGTACTTATTTATTGCTGTTGTTTGAAGGTGATAAATAAATGGAGACCTGGTCAACTAACCGTTGACTTCAATGAGAGAAGACTTATGGTCATTTCGATTGTTTGGTACAATATGAATTTTTGGAATGAAGCAGTTTGGTAAAAATGAATGTTATACTGGTATAGCGGTTTTATCCATTGNTAGCTTTGGTTATCTGACTGATAGGTCTTGTTATTTCAACGGAATGCAT ] [+] EMBL CD114285 [ TTCGCGACTAGCGGTATCATGTGTGGTGGTAGTGAACACAGAATATAG CTGTGTTTTGCGAGTGTGGTAGTGTCACAATTATTATTAGAAATGGTGAAATATTTTGCACACAGTACTTATTTATTGCTGTTGTTTGAAGGTGATAAATAAATGGAGATCTGGTCAACTAACCGTTGACTTCAATGAGAGAAGACTTATGGTCATTTCGATTGTGTGGTACAATATGAATTTTTGGAATGAAGCAGTTTGG ] consensusID : consensus_7600#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence [CATTGGTAGCTTTGGTTATCTGACTGATAGGTCTTGTTATTTCAACGGAATGCATTATGACCACAACTAACATGACGTCTCAATGATGTGTAAAATCCATGTTAAATGACTTTTGCAATTGCACGCTTTTTATTAACCTACCTATGAACATACTACTTACTTGAATGTTTCCACCTCTTCCAGAGTTTCGCCATCAAGTGTGATTGGGTTATCGGCGCTCAGTCAGTGCAATTACTTGCTATTGAAGGCACAGTACAGTTGGTGATGCGAATAGCTCTGGGATTCATTTTCGATTACCGTTTCATAAAACCTCATAGAGGTCTTATATGGACTGGAGGAATAGCATTTTCTTCTGTAATAATTATCTTTATTGCATTTGCCTCTCAATTGAAGTATTTGTCTGCTCTTATGTTTTTGCGAGGGTTATTTTTGGCTCTTTATATCTCCCAACAAGCTGTAGTTTTATCGGATTTATGTGAAGGACAACCAGAAACAACGAGTCAAACAATTGCTATTGCACAAATCTGCAAAGGATTAGGAATGTTGACTGGATCTTACTTTTCTGGTCTAATCAAAGATTATAC] [-] EMBL CD146781 [CATTGGTAGCTTTGGTTATCTGACTGATAGGTCTTGTTATTTCAACGGAATGCATTATGACCACAACTAACATGACGTCTCAATGATGTGTAAAATCCATGTTAAATGACTTTTGCAATTGCACGCTTTTTATTAACCTACCTATGAACATACTACTTACTTGAATGTTTCCACCTCTTCCAGAGTTTCGCCATCAAGTGTGATTGGGTTATCGGCGCTCAGTCAGTGCAATTACTTGCTATTGAAGGCACAGTACAGTTGGTGATGCGAATAGCTCTGGGATTCATTTTCGATTACCGTTTCATAAAACCTCATAGAGGTCTTATATGGACTGGAGGAATAGCATTTTCTTCTGTAATAATTATCTTTATTGCATTTGCCTCTCAATTGAAGTATTTGTCTGCTCTTATGTTTTTGCGAGGGTTATTTTTGGCTCTTTATATCTCCCAACAAGCTGTAGTTTTATCGGATTTATGTGAAGGACAACCAGAAACAACGAGTCAAACAATTGCTATTGCACAAATCTGCAAAGGATTAGGAATGTTGACTGGATCTTACTTTTCTGGTCTAATCAAAGATTATAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7600#0 TGGTGAGGGCTAGTGATGAGTGTGTGTGTGTGTGTGTAGCTCTTTCCACC-GGTTGATGT 59 consensus_7600#1 ------------------------------CATTGGTAGCTTTGGTTATCTGACTGATA- 29 * ****** * * * * **** consensus_7600#0 TGGTGCTGCATCTTCAAGAACAACGCGCCTCAATGTTTCATGCTGTGATCTGCTAATGCA 119 consensus_7600#1 -GGTCTTGTTATTTCAACGG-----------AATGCATTATGACCACAACTAACATGACG 77 *** ** ***** **** * *** * ** * * consensus_7600#0 CCTTGTTACTGGGTAGAACTAATCGACTCCTAAAATTTGTGACTAGTGGTATCATGTGTG 179 consensus_7600#1 TCTCAATGATGTGTAAAATCCAT-GTTAAATGACTTTTGCAATTGCACGCTTTTTATTAA 136 ** * ** *** ** ** * * * **** * * * * * * consensus_7600#0 G-TGGTAGTGAAGACAGAAGATAGTTTGTGTTTTGCGAGTGTGGTAGTGTCACAATTATT 238 consensus_7600#1 CCTACCTATGAACATACTACTTACTTGAATGTTTCCACCTCTTCCAGAGTTTCGCCATCA 196 * **** * * * ** ** *** * * * ** ** * consensus_7600#0 ATTAGAAATGGTGAAATATTTTGCACACAGTAC--TTATTTATTGCTGTTGTTTGAAGGT 296 consensus_7600#1 AGTGTGATTGGGTTATCGGCGCTCAGTCAGTGCAATTACTTGCTATTGAAGGCACAGTAC 256 * * * *** * ** **** * *** ** * ** * * consensus_7600#0 GATAAATAA-ATGGAGATCTGGTCAACTAACCGTTGACTTCAATGAGAGAAGACTT-ATG 354 consensus_7600#1 AGTTGGTGATGCGAATAGCTCTGGGATTCATTTTCGATTACCGTTTCATAAAACCTCATA 316 * * * * * * ** * * * * ** * * * * ** ** * ** consensus_7600#0 GTCATTTCG-ATTGTTTGGTACAATATGAATTTTTGGAATGAAGCAGTTTGGTAAAAATG 413 consensus_7600#1 GAGGTCTTATATGGACTGGAGGAATAGCATTTTCTTCTGT-AATAATTATCTTTATTGCA 375 * * * ** * *** **** * *** * * ** * * * * * consensus_7600#0 AATGTTATACTGGTATAGCGGTTNTATCCATTGGTAGCTTTGGTTATCTGACTGATAGGT 473 consensus_7600#1 TTTGCCTCTCAATTGAAGTATTTGTCTGCTCTTATGTTTTTGCGAGGGTTATTTTTGGCT 435 ** * * ** ** * * * * * **** * * * * * * consensus_7600#0 CTTGTTATTTC--AACGGAATGCATTATGACCACAACTAACATGACGTCTCAATGATGTG 531 consensus_7600#1 CTTTATATCTCCCAACAAGCTGTAGTTTTATCG-GATTTATGTGAAGGACAACCAGAAAC 494 *** *** ** *** ** * * * * * * * * *** * * consensus_7600#0 TAAAATCCATGTTAAATGACTTTTGCAATTGCACGCTTTNTATTAACCTACCTATGAACA 591 consensus_7600#1 AACGAGTCAAAC--AATTGCTATTGCACAAATCTGCAAAGGATTAGGAATGTTGACTGGA 552 * * ** *** ** ***** ** **** * * consensus_7600#0 TACTACTTACTTGAT-TACCTATGANACA--- 619 consensus_7600#1 TCTTACTTTTCTGGTCTAATCAAAGATTATAC 584 * ***** ** * ** * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||