These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7645#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 679 fasta sequence [GTGGTGTCTGTTCACGTGCGTTGTAGTGTGGANTAAAGGGAGATGGTTCTAGGTTTTAATTATAAGGATGTTTGAGCGTTTTGGCTGCTCAATCGAAGCGTCAGTCCTGATTTTGGAAGTATGACTGGTTCACTTCAAAAAAAAGTTGAATGCACACTGGGCGAGGTGTGTTCCTGATAAACGACTTGCAATTCAGTTACTTCGAGTTACTCCGTTTATTTTTATGGCAAGTCGATCAACTATGGGCAGCCTTCTTTGCTGTGACGTAGAGGAACCTTTTGCTGTACTGTCTACATCTAATCAATATCCTAGGATCTATGATGGTAACTTATGGATTAGTGCAAAATTCGTGTCCTATGTACGCGACCCTTTACCCAAGTGCAGTCGCCGTATACGCGTTATCGAAACCTGCTTTTGGTTAATTAGAATTTTGAGCTATTCTATTCAGTATCTTGAGGAGAAGAAGGAGCACTTTGCTTTTATTGAATCTTTTTCAATTATCCAGGAATTTCATACCGATGCAACAGTTTTCTCTCAGATGATTGGAGTGACTGAAGCTATTACCAACACGAATAAAAACCATATTCTTTCACGTTCACCAGTACGGAAAAAAACCATACCCAAGAAGAAACGTGTTGATGCTAATAAAAATAAATGTGACTTTCCCAGATCATGCTCT] [-] EMBL CD188975 [GTGGTGTCTGTTCACGTGCGTTGTAGTGTGGANTAAAGGGAGATGGTTCTAGGTTTTAATTATAAGGATGTTTGAGCGTTTTGGCTGCTCAATCGAAGCGTCAGTCCTGATTTTGGAAGTATGACTGGTTCACTTCAAAAAAAAGTTGAATGCACACTGGGCGAGGTGTGTTCCTGATAAACGACTTGCAATTCAGTTACTTCGAGTTACTCCGTTTATTTTTATGGCAAGTCGATCAACTATGGGCAGCCTTCTTTGCTGTGACGTAGAGGAACCTTTTGCTGTACTGTCTACATCTAATCAATATCCTAGGATCTATGATGGTAACTTATGGATTAGTGCAAAATTCGTGTCCTATGTACGCGACCCTTTACCCAAGTGCAGTCGCCGTATACGCGTTATCGAAACCTGCTTTTGGTTAATTAGAATTTTGAGCTATTCTATTCAGTATCTTGAGGAGAAGAAGGAGCACTTTGCTTTTATTGAATCTTTTTCAATTATCCAGGAATTTCATACCGATGCAACAGTTTTCTCTCAGATGATTGGAGTGACTGAAGCTATTACCAACACGAATAAAAACCATATTCTT ] [+] EMBL CD153173 [ GGAACCTTTTGCTGTACTGTCTACATCTAATCAATATCCTAGGATCTATGATGGTAACTTATGGATTAGCGCAAAATTCGTGTCCTATGTACGCGACCCTTTACCCAAGTGCAGTCGCCGTATACGCGTTATCGAAACCTGCTTTTGGTTAATTAGAATTTTGAGCTATTCTATTCAGTATCTTGAGGAGAAGAAGGAGCACTTTGCTTTTATTGAATCTTTTTCAATTATCCAGGAATTTCATACCGATGCAACAGTTTTCTCTCAGATGATTGGAGTGACTGAAGCTATTAACAACACGAATAAAAACCATATTCTTTCACGTTCACCAGTACGGAAAAAAACCATACCCAAGAAGAAACGTGTTGATGCTAATAAAAATAAATGTGACTTTCCCAGATCATGCTCT] consensusID : consensus_7645#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 627 fasta sequence [CTCTCCTTTAAAACCATCGCCTAAAACGTCGTTTATTGTTGATAGCTTGCCTGGTGTTTTCGCTGTTGACAAGCCAACAAATTATATAGTCACAAATTCTCCAACAGTTATTGAAAATAAAGAAAATATCCCAATCACAGAAGCTCCAATGATGCATTCAACCTCACCCTGTTCAAAAGACTCATCACTTTTCAAGGATCTCTTCGATAGCAATGATGATTACTCTATTGAACTTAAAAATCTCTCGAACAGTTTTATGACGAGTGAAATATTAACGCCTTTCGCGAGATTATCTCAAAATAATAATACAGATATAATCACTTCCGAAGTAGCACATCCTCAGGCGCCAGTTTCCGAATCTCAAGACAATAAATTATCTTCACCCAGTACTCAGTATTTTTCTGTTCAGGATGCAAGTGATTTCTCAATTCTGAAAACTTCAAATTCTTCAGTTATGGAAATTAACTCAAATGGACAGCTTAATGCTAAACGTCCACGAAATTTCGCTTCAACTCATTCTCCCACTGCTTTGAGATCTGCAATAACTGTTTCATCGCCTATTATGTCGAGTATATCGTTGACAGATACCAATCGTCCACTTGGAAGTCTGGAATTNTCTTCATGTTC] [+] EMBL CD079238 [CTCTCCTTTAAAACCATCGCCTAAAACGTCGTTTATTGTTGATAGCTTGCCTGGTGTTTTCGCTGTTGACAAGCCAACAAATTATATAGTCACAAATTCTCCAACAGTTATTGAAAATAAAGAAAATATCCCAATCACAGAAGCTCCAATGATGCATTCAACCTCACCCTGTTCAAAAGACTCATCACTTTTCAAGGATCTCTTCGATAGCAATGATGATTACTCTATTGAACTTAAAAATCTCTCGAACAGTTTTATGACGAGTGAAATATTAACGCCTTTCGCGAGATTATCTCAAAATAATAATACAGATATAATCACTTCCGAAGTAGCACATCCTCAGGCGCCAGTTTCCGAATCTCAAGACAATAAATTATCTTCACCCAGTACTCAGTATTTTTCTGTTCAGGATGCAAGTGATTTCTCAATTCTGAAAACTTCAAATTCTTCAGTTATGGAAATTAACTCAAATGGACAGCTTAATGCTAAACGTCCACGAAATTTCGCTTCAACTCATTCTCCCACTGCTTTGAGATCTGCAATAACTGTTTCATCGCCTATTATGTCGAGTATATCGTTGACAGATACCAATCGTCCACTTGGAAGTCTGGAATTNTCTTCATGTTC] [+] EMBL CD087375 [ taccTTCGCTGTTGACAAGCCAACAAATTATATAGTCACAAATTCTCCAACAGTTATTGAAAATAAAGAAAATATCCCAATCACAGAAGCTCCAATGATGCATTCAACCTCACCCTGTTCAAAAGACTCATCACTTTTCAAGGATCTCTTCGATAGCAATGATGATTACTCTATTGAACTTAAAAATCTCTCGAACAGTTTTATGACGAGTGAAATATTAACGCCCTTCGCGAGATTATCTCAAAATAATAATACAGATATAATCACTTCCGAAGTAGCACATCCTCAGGCGCCAGTT ] consensusID : consensus_7645#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence [TTCGTGTCCTATGTACGCGACCCTTTACCCAAGTGCAGTCGCCGTATACGCGTTATCGAAACCTGCTTTTGGTTAATTAGAATTTCGAGCTATTCTATTCAGTATCTTGAGGAGAAGAAGGAGCACTTTGCTTTTATTGAATCTTTTTCAATTATCCAGGAATTTCATACCGATGCAACAGTTTTCTCTCAGATGATTGGAGTATCGAACAGTGGTTTCGTCCCGTCTTATTGAACTATCAAAATTTATTTCTTTAAAGTGTTAAACGATGTATCTGGACTGAAGCTATTAACAACACGAATAAAAACCATATTCTTTCACGTTCACCAGTACGGAAAAAAACCATACCCAAGAAGAAACGTGTTGATGCTAATAAAAATAAATGTGACTTTCCCAGATCATGCTCTAATATACATCCGACAGAAAATCCTCCTCAACACTACTCTCCTTTAAAACCATCGCCTAAAACGTCGTTTATTGTTGATAGCTTGCCTGGTGTTTTCGCTGTTGACAAGCCAACAAATTATATAGTCACAAATTCTCCAACAGTTATTGAAAATAAAGAACTTAATCTTTCTTAACGATAATATCCCAATCACAGAAGCTCCAA] [-] EMBL CD122965 [TTCGTGTCCTATGTACGCGACCCTTTACCCAAGTGCAGTCGCCGTATACGCGTTATCGAAACCTGCTTTTGGTTAATTAGAATTTCGAGCTATTCTATTCAGTATCTTGAGGAGAAGAAGGAGCACTTTGCTTTTATTGAATCTTTTTCAATTATCCAGGAATTTCATACCGATGCAACAGTTTTCTCTCAGATGATTGGAGTATCGAACAGTGGTTTCGTCCCGTCTTATTGAACTATCAAAATTTATTTCTTTAAAGTGTTAAACGATGTATCTGGACTGAAGCTATTAACAACACGAATAAAAACCATATTCTTTCACGTTCACCAGTACGGAAAAAAACCATACCCAAGAAGAAACGTGTTGATGCTAATAAAAATAAATGTGACTTTCCCAGATCATGCTCTAATATACATCCGACAGAAAATCCTCCTCAACACTACTCTCCTTTAAAACCATCGCCTAAAACGTCGTTTATTGTTGATAGCTTGCCTGGTGTTTTCGCTGTTGACAAGCCAACAAATTATATAGTCACAAATTCTCCAACAGTTATTGAAAATAAAGAACTTAATCTTTCTTAACGATAATATCCCAATCACAGAAGCTCCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7645#0 GTGGTGTCTGTTCACGTGCGTTGTAGTGTGGANTAAAGGGAGATGGTTCTAGGTTTTAAT 60 consensus_7645#2 ------------------------------------------------------------ consensus_7645#1 ------------------------------------------------------------ consensus_7645#0 TATAAGGATGTTTGAGCGTTTTGGCTGCTCAATCGAAGCGTCAGTCCTGATTTTGGAAGT 120 consensus_7645#2 ------------------------------------------------------------ consensus_7645#1 ------------------------------------------------------------ consensus_7645#0 ATGACTGGTTCACTTCAAAAAAAAGTTGAATGCACACTGGGCGAGGTGTGTTCCTGATAA 180 consensus_7645#2 ------------------------------------------------------------ consensus_7645#1 ------------------------------------------------------------ consensus_7645#0 ACGACTTGCAATTCAGTTACTTCGAGTTACTCCGTTTATTTTTATGGCAAGTCGATCAAC 240 consensus_7645#2 ------------------------------------------------------------ consensus_7645#1 ------------------------------------------------------------ consensus_7645#0 TATGGGCAGCCTTCTTTGCTGTGACGTAGAGGAACCTTTTGCTGTACTGTCTACATCTAA 300 consensus_7645#2 ------------------------------------------------------------ consensus_7645#1 ------------------------------------------------------------ consensus_7645#0 TCAATATCCTAGGATCTATGATGGTAACTTATGGATTAGTGCAAAATTCGTGTCCTATGT 360 consensus_7645#2 ----------------------------------------------TTCGTGTCCTATGT 14 consensus_7645#1 -------------------------------------------------CTCTCCTTTAA 11 * **** * consensus_7645#0 ACGCGACCCTTTACCCAAGTGCAGTCGCCGTATACGCGTTATCGAAACCTGCTTTTGGTT 420 consensus_7645#2 ACGCGACCCTTTACCCAAGTGCAGTCGCCGTATACGCGTTATCGAAACCTGCTTTTGGTT 74 consensus_7645#1 AACCATCGCCTAAAACGTCGTTTATTGTTGATAGCTTGCCTGGTGTTTTCGCTGTTGACA 71 * * * * * * * * * * * * *** *** consensus_7645#0 AATTAG--AATTTTGAGCTATTCTATTCAGTATC--TTGAGGAGAAGAAGGAGCACTTTG 476 consensus_7645#2 AATTAG--AATTTCGAGCTATTCTATTCAGTATC--TTGAGGAGAAGAAGGAGCACTTTG 130 consensus_7645#1 AGCCAACAAATTATATAGTCACAAATTCTCCAACAGTTATTGAAAATAAAGAAAATATCC 131 * * **** * **** * * ** ** ** ** ** * * consensus_7645#0 CTTTTATTGAATCTTTTTCAATTATCCAGG-AATTTCATACCGATGCAACAGTTTTCTCT 535 consensus_7645#2 CTTTTATTGAATCTTTTTCAATTATCCAGG-AATTTCATACCGATGCAACAGTTTTCTCT 189 consensus_7645#1 CAATCACAGAAGC---TCCAATGATGCATTCAACCTCACCCTGTT-CAAAAGACTCATCA 187 * * * *** * * **** ** ** ** *** * * * *** ** * ** consensus_7645#0 CAGATGATTGGAGT---------------------------------------------- 549 consensus_7645#2 CAGATGATTGGAGTATCGAACAGTGGTTTCGTCCCGTCTTATTGAACTATCAAAATTTAT 249 consensus_7645#1 CTTTTCAAGGATCTCTTCGATAGCAATGATGATTACTCT-ATTGAACTTAAAAA------ 240 * * * * * consensus_7645#0 ----------------------------G-ACTGAAGCTATTACCAACACGAATAAAAAC 580 consensus_7645#2 TTCTTTAAAGTGTTAAACGATGTATCTGG-ACTGAAGCTATTAACAACACGAATAAAAAC 308 consensus_7645#1 TCTCTCGAACAGTTTTATGACGAGTGAAATATTAACGCCTTTCGCGAGATTATCTCAAA- 299 * * * ** ** * * * * *** consensus_7645#0 CATATTCTTTCACGT-TCACCAGTACGGAAAAAAACCATACCCAAGAAGAAACGTGTTGA 639 consensus_7645#2 CATATTCTTTCACGT-TCACCAGTACGGAAAAAAACCATACCCAAGAAGAAACGTGTTGA 367 consensus_7645#1 -ATAATAATACAGATATAATCACTTCCGAAGTAGCACATCCTCAGGCGCCAGT-TTCCGA 357 *** * * ** * * * ** * * *** * *** * ** * * * ** consensus_7645#0 TGCTAATAAAAATAAATGTGACTTTCCCAGATCATGCTCT-------------------- 679 consensus_7645#2 TGCTAATAAAAATAAATGTGACTTTCCCAGATCATGCTCTAATATACATCCGACAGAAAA 427 consensus_7645#1 ATCTCAAGACAATAAATTATCTTCACCCAG----TACTC-AGTATTTTTCTGTTCAGGA- 411 ** * * ******* * ***** * *** consensus_7645#0 ------------------------------------------------------------ consensus_7645#2 TCCTCCTCAACACTACTCTCCTTTAAAACCATCGCCTAAAACGTCGTTTATTGTTGATAG 487 consensus_7645#1 ---TGCAAGTGATTTCTCAATTCTGAAAACTTCA---AATTCTTCAGTTATGGAAATTAA 465 consensus_7645#0 ------------------------------------------------------------ consensus_7645#2 CTTGCCTGGTGTTTTCGCTGTTGACAAGCCAACAAATTATATAGTCACAAATTCTCCAAC 547 consensus_7645#1 CTCAAATGGACAGCTTAATGCTAAACGTCCACGAAATTTCGCTTCAACTCATTCTCCCAC 525 consensus_7645#0 ------------------------------------------------------------ consensus_7645#2 AGTTATTGAA-----AATAAAGAACTTAATCTTTCTTAACGATAATATCCCAATCACAGA 602 consensus_7645#1 TGCTTTGAGATCTGCAATAACTGTTTCATCGCCTATTATGTCGAGTATATCGTTGACAGA 585 consensus_7645#0 ------------------------------------------ consensus_7645#2 AGCTCCAA---------------------------------- 610 consensus_7645#1 TACCAATCGTCCACTTGGAAGTCTGGAATTNTCTTCATGTTC 627 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||