These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7675#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 903 fasta sequence [TCAACCATTGATCAGTAGACAAATGGCTAAAAATATCATAGGTCATTCATTATATCAATTGGGTGTTATATTTTTCTTATTATTTTATGTTGATTTAATCATGGAAGTGGATAATGTATCGGGTATTACAATACATGAACCAACACAACATTATACTATTATATTTAATGCTTTGGTATTAATGACATTATTTAATGAATTTAATGCAAGAAAAATACATGGACAACGTAATGTATTTAGTGGTTTACATAGAAATCCATTATTTATTATCATTTGGTTTGTAACATTTTTATTACAAGCATTAATTATACAATTTGGTTCATATGCATTTAGTACAAAAGCATTAGAATTAGATCAATGGGCATGGTGTTTATTCTTTGGTGTTGGTGAACTTGTATGGGGTCAGGTTGTGAATACAGTACCGAATGCAATTATACCAAAATGTAAATGTCGTANACGTAAACGTNCAACAGTTGTCGGTGTTAATGAAAATGCAGCTGGTGAATATATTAAGGATGCGATTGAAGTCGGTGAAGTTGATGAAGAAGACGAAGATGAAATCTCTCCATTATCATTAGGTGGTGCTAATATGGGAATTGGTGGACGTATTTTATGGATTCGTGGTGTAAATCGTATTCAAACACAGATGCAAGCTGTAAGTGGTCTTTCACGAAAGTAACTAACTAAATACTCCTTATGGGGGTTGTTTGTTTGTTTGTTTTCTTTATTTATTTTTAAAAGAAAAAGAGATTGCTTTGATGTTGTCCTCGTTGTTGTTGTTGTCGTTGTCGTTACTGTTATATATGATTATTGCGTTTGACAGCTTCTATTTAGTTTTCAACATTTTATTATCGCTGTGGTTGATATGTTCTTTTTTCTCCATTTATTTATGCATTTTTCCTT] [+] EMBL CD137363 [TCAACCATTGATCAGTAGACAAATGGCTAAAAATATCATAGGTCATTCATTATATCAATTGGGTGTTATATTTTTCTTATTATTTTATGTTGATTTAATCATGGAAGTGGATAATGTATCGGGTATTACAATACATGAACCAACACAACATTATACTATTATATTTAATGCTTTGGTATTAATGACATTATTTAATGAATTTAATGCAAGAAAAATACATGGACAACGTAATGTATTTAGTGGTTTACATAGAAATCCATTATTTATTATCATTTGGTTTGTAACATTTTTATTACAAGCATTAATTATACAATTTGGTTCATATGCATTTAGTACAAAAGCATTAGAATTAGATCAATGGGCATGGTGTTTATTCTTTGGTGTTGGTGAACTTGTATGGGGTCAGGTTGTGAATACAGTACCGAATGCAATTATACCAAAATGTAAATGTCGTANACGTAAACGTNCAACAGTTGTCGGTGTTAATGAAAATGCA ] [+] EMBL CD083499 [ CGAGGGCCATTATACCAAAATGTAAATGTCGTAAACGTAAACGTCCAACAGTTGTCGGTGTTAATGAAAATGCAGCTGGTGAATATATTAAGGATGCGATTGAAGTCGGTGAAGTTGATGAAGAAGACGAAGATGAAATCTCTCCATTATCATTAGGTGGTGCTAATATGGGAATTGGTGGACGTATTTTATGGATTCGTGGTGTAAATCGTATTCAAACACAGATGCAAGCTGTAAGTGGTCTTTCACGAAAGTAACTAACTAAATACTCCTTATGGGGGTTGTTTGTTTGTTTGTTTTCTTTATTTATTTTTAAAAGAAAAAGAGATTGCTTTGATGTTGTCCTCGTTGTTGTTGTTGTCGTTGTCGTTACTGTTATATATGATTATTGCGTTTGACAGCTTCTATTTAGTTTTCAACATTTTATTATCGCTGTGGTTGATATGTTCTTTTTTCTCCATTTATTTATGCATTTTTCCTT] consensusID : consensus_7675#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [ATATTAAGGATGCGATTGAAGTCGGTGAAGTTGATGAAGAAGAAGAAGATGAAATCTCTCCATTATCATTAGGTGGTGCTAATATGGGAATTGGTGGACGTATTTTATGGATTCGTGGTGTAAATCGTATTCAAACACAGATGCAAGCTATGAAAGTGGTCGATGCATTCCGTATGGGACTTGGACCGCATATTGATTTGGAACATCGTAGAAGTATTGGTTCGTTGGCATTTAGACAACGTCAAAATTCCAGTATTGAGTATGTGGATGCTGATGCTCCGGATGAGTCTTAATTACATTTATCTGTGTTGAATACGCTTATGCGTATATGTTTGTATGGATGCATAAGCATCAGTATTGGCGTCAACGCTTGATATATATCATTAAATACTAAACAGAATTATACCTTTTGATCTGTACGTTACCCTTAATAGATAGTTGATCATATCAATTATTACAAAGACCTAAATGTATGCGAAATTTGTATTTCTTTCCTCCCTATACACAAAATCTCCCCCCCTCTCTCTCTCACACACACTTATATATATTTCCACACATAAGCCTGC] [+] EMBL CD201832 [ATATTAAGGATGCGATTGAAGTCGGTGAAGTTGATGAAGAAGAAGAAGATGAAATCTCTCCATTATCATTAGGTGGTGCTAATATGGGAATTGGTGGACGTATTTTATGGATTCGTGGTGTAAATCGTATTCAAACACAGATGCAAGCTATGAAAGTGGTCGATGCATTCCGTATGGGACTTGGACCGCATATTGATTTGGAACATCGTAGAAGTATTGGTTCGTTGGCATTTAGACAACGTCAAAATTCCAGTATTGAGTATGTGGATGCTGATGCTCCGGATGAGTCTTAATTACATTTATCTGTGTTGAATACGCTTATGCGTATATGTTTGTATGGATGCATAAGCATCAGTATTGGCGTCAACGCTTGATATATATCATTAAATACTAAACAGAATTATACCTTTTGATCTGTACGTTACCCTTAATAGATAGTTGATCATATCAATTATTACAAAGACCTAAATGTATGCGAAATTTGTATTTCTTTCCTCCCTATACACAAAATCTCCCCCCCTCTCTCTCTCACACACACTTATATATATTTCCACACATAAGCCTGC] consensusID : consensus_7675#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence [TGTGTGGAAATATATATAAGTGTGTGTGAGAGAGAGAGGGGGGGAGATTTTGTGTATAGGGAGGAAAGAAATACAAATTTCGCATACATTTAGGTCTTTGTAATAATTGATATGATCAACTATCTATTAAGGGTAACGTACAGATCAAAAGGTATAATTCTGTTTAGTATTTAATGATATATATCAAGCGTTGACGCCAATACTGATGCTTATGCATCCATACAAACATATACGCATAAGCGTATTCAACACAGATAAATGTAATTAAGACTCATCCGGAGCATCAGCATCCACATACTCAATACTGGAATTTTGACGTTGTCTAAATGCCAACGAACCAATACTTCTACGATGTTCCAAATCAATATGCGGTCCAAGTCCCATACGGAATGCATCGACCACTTTCATCTGATGATAAGTAGGGTAGGTTTCACCAACATTATTGATTAGAAGCGAGTAGAGATGTAATA] [+] EMBL CD195232 [TGTGTGGAAATATATATAAGTGTGTGTGAGAGAGAGAGGGGGGGAGATTTTGTGTATAGGGAGGAAAGAAATACAAATTTCGCATACATTTAGGTCTTTGTAATAATTGATATGATCAACTATCTATTAAGGGTAACGTACAGATCAAAAGGTATAATTCTGTTTAGTATTTAATGATATATATCAAGCGTTGACGCCAATACTGATGCTTATGCATCCATACAAACATATACGCATAAGCGTATTCAACACAGATAAATGTAATTAAGACTCATCCGGAGCATCAGCATCCACATACTCAATACTGGAATTTTGACGTTGTCTAAATGCCAACGAACCAATACTTCTACGATGTTCCAAATCAATATGCGGTCCAAGTCCCATACGGAATGCATCGACCACTTTCATCTGATGATAAGTAGGGTAGGTTTCACCAACATTATTGATTAGAAGCGAGTAGAGATGTAATA] consensusID : consensus_7675#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence [CAGCTGGTGAATATATTAAGGATGCGATTGAAGTCGGTGAAGTTGATGAAGAAGAAGAAGATGAAATCTCTCCATTATCATTAGGTGGTGCTAATATGGGAATTGGTGGACGTATTTTATGGATTCGTGGTGTAAATCGTATTCAAACACAGATGCAAGCTGTTTCATAATATATTTTTGATTGAGATCATGAATTGATCAATATTAGACCACCATTGAAAACTTGGAAGCACTGGACTACCGCAACTATCTTCCATTATCTTCGATGAAAGTGGTCGATGCATTCCGTATGGGACTTGGACCGCATATTGATTTGGAACATCGTAGAAGTATTGGTTCGTTGGCATTTAGACAACGTCAAAATTCCAGTATTGAGTAT] [+] EMBL CD064057 [CAGCTGGTGAATATATTAAGGATGCGATTGAAGTCGGTGAAGTTGATGAAGAAGAAGAAGATGAAATCTCTCCATTATCATTAGGTGGTGCTAATATGGGAATTGGTGGACGTATTTTATGGATTCGTGGTGTAAATCGTATTCAAACACAGATGCAAGCTGTTTCATAATATATTTTTGATTGAGATCATGAATTGATCAATATTAGACCACCATTGAAAACTTGGAAGCACTGGACTACCGCAACTATCTTCCATTATCTTCGATGAAAGTGGTCGATGCATTCCGTATGGGACTTGGACCGCATATTGATTTGGAACATCGTAGAAGTATTGGTTCGTTGGCATTTAGACAACGTCAAAATTCCAGTATTGAGTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7675#1 ------------------------------------------------------------ consensus_7675#3 ------------------------------------------------------------ consensus_7675#0 TCAACCATTGATCAGTAGACAAATGGCTAAAAATATCATAGGTCATTCATTATATCAATT 60 consensus_7675#2 ------------------------------------------------------------ consensus_7675#1 ------------------------------------------------------------ consensus_7675#3 ------------------------------------------------------------ consensus_7675#0 GGGTGTTATATTTTTCTTATTATTTTATGTTGATTTAATCATGGAAGTGGATAATGTATC 120 consensus_7675#2 ------------------------------------------------------------ consensus_7675#1 ------------------------------------------------------------ consensus_7675#3 ------------------------------------------------------------ consensus_7675#0 GGGTATTACAATACATGAACCAACACAACATTATACTATTATATTTAATGCTTTGGTATT 180 consensus_7675#2 ------------------------------------------------------------ consensus_7675#1 ------------------------------------------------------------ consensus_7675#3 ------------------------------------------------------------ consensus_7675#0 AATGACATTATTTAATGAATTTAATGCAAGAAAAATACATGGACAACGTAATGTATTTAG 240 consensus_7675#2 ------------------------------------------------------------ consensus_7675#1 ------------------------------------------------------------ consensus_7675#3 ------------------------------------------------------------ consensus_7675#0 TGGTTTACATAGAAATCCATTATTTATTATCATTTGGTTTGTAACATTTTTATTACAAGC 300 consensus_7675#2 ------------------------------------------------------------ consensus_7675#1 ------------------------------------------------------------ consensus_7675#3 ------------------------------------------------------------ consensus_7675#0 ATTAATTATACAATTTGGTTCATATGCATTTAGTACAAAAGCATTAGAATTAGATCAATG 360 consensus_7675#2 ------------------------------------------------------------ consensus_7675#1 ------------------------------------------------------------ consensus_7675#3 ------------------------------------------------------------ consensus_7675#0 GGCATGGTGTTTATTCTTTGGTGTTGGTGAACTTGTATGGGGTCAGGTTGTGAATACAGT 420 consensus_7675#2 ------------------------------------------------------------ consensus_7675#1 ------------------------------------------------------------ consensus_7675#3 ------------------------------------------------------------ consensus_7675#0 ACCGAATGCAATTATACCAAAATGTAAATGTCGTANACGTAAACGTNCAACAGTTGTCGG 480 consensus_7675#2 ------------------------------------------------------------ consensus_7675#1 --------------------------ATAT-TAAGGATGCGATTGAAGTCGGTGAAGTTG 33 consensus_7675#3 --------------CAGCTGGTGAATATAT-TAAGGATGCGATTGAAGTCGGTGAAGTTG 45 consensus_7675#0 TGTTAATGAAAATGCAGCTGGTGAATATAT-TAAGGATGCGATTGAAGTCGGTGAAGTTG 539 consensus_7675#2 -----TGTGTGGAAATATATATAAGTGTGTGTGAGAGAGAGAGGGGGGGAGATTTTGTGT 55 * * * ** * ** * * * * ** consensus_7675#1 ATGAAGAAGAAGAAGATGAAATCTCTCCATTATCATTAGGTGGTGCTAATATGGGAATTG 93 consensus_7675#3 ATGAAGAAGAAGAAGATGAAATCTCTCCATTATCATTAGGTGGTGCTAATATGGGAATTG 105 consensus_7675#0 ATGAAGAAGACGAAGATGAAATCTCTCCATTATCATTAGGTGGTGCTAATATGGGAATTG 599 consensus_7675#2 ATAGGGAGGAAAGAAATACAAATTTCGCAT-ACATTTAGGTCTTTGTAATAATTGATATG 114 ** ** ** * ** ** * *** * ****** * ***** ** ** consensus_7675#1 GTGGACGTATTTTATGGATTCGTGGTGTAAATCGTATTCAAACACAGATGCAAGCTATGA 153 consensus_7675#3 GTGGACGTATTTTATGGATTCGTGGTGTAAATCGTATTCAAACACAGATGCAAGCTGTTT 165 consensus_7675#0 GTGGACGTATTTTATGGATTCGTGGTGTAAATCGTATTCAAACACAGATGCAAGCTGT-- 657 consensus_7675#2 ATCAAC-TATCTATTAAGGGTAACGTACAGATCAAAAG-GTATAATTCTGTTTAGTATTT 172 * ** *** * * ** * *** * * * ** * * consensus_7675#1 AAGTGGTCGATGCATTCCGTATGGGACTTGGAC--CGCATATTGATTTGGAACATCGTAG 211 consensus_7675#3 CA-TAAT--ATATTTTTGATTGAGATCATGAAT--TGATCAATA--TTAGACCACCATTG 218 consensus_7675#0 AAGTGGT------CTTTCACGAAAGTAACTAAC--TAAATACTCCTTATGGGGGTTGTTT 709 consensus_7675#2 AA-TGATATATATCAAGCGTTGACGCCAATACTGATGCTTATGCATCCATACAAACATAT 231 * * * * * consensus_7675#1 AAGTATTGGTTCGTTGGCATTTAGACAACGTCAAAATTCCAGTATTGAGTATGTGGATG- 270 consensus_7675#3 AAAACTTGGAAGCACTGGACT---ACCGCAACTATCTTCCATTATCTTCGATGAAAGTGG 275 consensus_7675#0 GTTTGTTTGTTTTCTTTATTTATTTTTAAAAGAAAAAGAGATTGCTTTG-ATGTTGTCC- 767 consensus_7675#2 ACGCATAAGC-GTATTCAACACAGATAAATGTAATTAAGACTCATCCGGAGCATCAGCA- 289 * * * consensus_7675#1 CTGATGC--TCCGGATGAGTCTTAATTACATTTATCTGTGTTGAATACGCTTATGCGTAT 328 consensus_7675#3 TCGATGCATTCCGTATGGGACTTGGAC-CGCATATTGATTTGGAACAT-CGTAGAAGTAT 333 consensus_7675#0 TCGTTGTTGTTGTTGTC-GTTGTCGTTACTGTTATATATGATTATTGCGTTTGACAGCTT 826 consensus_7675#2 TCCACATACTCAATACTGGAATTT-TGACGTTGTCTAAATGCCAACGAACCAATACTTCT 348 * * * * * * consensus_7675#1 ATGTTTGTATGGATGCATA-AGCATCAGTATTGGCGTCAACGCTTGATATATATCATTAA 387 consensus_7675#3 TGGTTCGTTGGCATTTAGACAACGTCAAAATT----CCAGTATTGAGTAT---------- 379 consensus_7675#0 CTATTTA-----GTTTTCAACATTTTATTATCG----CTGTGGTTGATATGTTCTTTT-- 875 consensus_7675#2 ACGATGTTCCAAATCAATATGCGGTCCAAGTCC---CATACGGAATGCATCGACCACTTT 405 * * * * * ** consensus_7675#1 ATACTAAACAGAATTATACCTTTTGATCTGTACGTTACCCTTAATAGATAGTTGATCATA 447 consensus_7675#3 ------------------------------------------------------------ consensus_7675#0 -TTCTCCATTTATTTATGCATTTTTCCTT------------------------------- 903 consensus_7675#2 CATCTGATGATAAGTAGGGTAGGTTTCACCAACATTATTGATTAGAAGCGAGTAGAGATG 465 consensus_7675#1 TCAATTATTACAAAGACCTAAATGTATGCGAAATTTGTATTTCTTTCCTCCCTATACACA 507 consensus_7675#3 ------------------------------------------------------------ consensus_7675#0 ------------------------------------------------------------ consensus_7675#2 TAATA------------------------------------------------------- 470 consensus_7675#1 AAATCTCCCCCCCTCTCTCTCTCACACACACTTATATATATTTCCACACATAAGCCTGC 566 consensus_7675#3 ----------------------------------------------------------- consensus_7675#0 ----------------------------------------------------------- consensus_7675#2 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Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||