These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7693#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 609 fasta sequence [TAAGCTTGTATTTATTGTAATCAATTGTTTTTATTCCGAAAAGACGGTTAAGCTTTTTTCTAATGTATTGTCAAAGTCATACAAGAAAACTGTAGTTTATACAGGTTAGAAAGTATATACAGCAAAGATTACAATAGTATATATGCATTCGACATGTATTGGATTGTGAAAAGGGAATTATTTTGGATAAAACTTGACGGCCATGTGGTGTAAATGTTAGTCACGTTTATTTTATGATAGGGTTGGCGACCAAATCCTGACAGTACAGTTGCTGTTGACACGGATAATTGAGTTGACGTGTAGAGTTTCCAAGTAGAAATTAAATTAGGAGACTTTAATAGTGGATCAAACGATTGAACTGATGGTGGGTCATTAAAATTCGGCATTCCTTGAAATATGTGCAGGTTATTTATTATCAACGCAATAATAATAATTATGATTGCTTTTTAATAAGTTTGTGTCGTACATTTGTAGATCAGTTGGATTATTTTTAAGTTCTGCATGTAGCAGCAACAGAAATAGGATTATCAATAAACTAACAACTGTCAATCCCATTCCGAGCATATATTCAGCGTATGCATCAATATAATCGACAAGTAGGTTAAAACA] [+] EMBL CD076139 [TAAGCTTGTATTTATTGTAATCAATTGTTTTTATTCCGAAAAGACGGTTAAGCTTTTTTCTAATGTATTGTCAAAGTCATACAAGAAAACTGTAGTTTATACAGGTTAGAAAGTATATACAGCAAAGATTACAATAGTATATATGCATTCGACATGTATTGGATTGTGAAAAGGGAATTATTTTGGATAAAACTTGACGGCCATGTGGTGTAAATGTTAGTCACGTTTATTTTATGATAGGGTTGGCGACCAAATCCTGACAGTACAGTTGCTGTTGACACGGATAATTGAGTTGACGTGTAGAGTTTCCAAGTAGAAATTAAATTAGGAGACTTTAATAGTGGATCAAACGATTGAACTGATGGTGGGTCATTAAAATTCGGCATTCCTTGAAATATGTGCAGGTTATTTATTATCAACGCAATAATAATAATTATGATTGCTTTTTAATAAGTTTGTGTCGTACATTTGTAGATCAGTTGGATTATTTTTAAGTTCTGCATGTAGCAGCAACAGAAATAGGATTATCAATAAACTAACAACTGTCAATCCCATTCCGAGCATATATTCAGCGTATGCATCAATATAATCGACAAGTAGGTTAAAACA] [+] EMBL SMW766 [ AATTGTTTTTATTCCGAAAAGACGGTTAAGCTTTTTTCTAATGTATTGTCAAAGTCATACAAGAAAACTGTAGTTTATACAGGTTAGAAAGTATATACAGCAAAGATTACAATAGTATATATGCATTCGACATGTATTGGATTGTGAAAAGGGAATTATTTTGGATAAAACTTGACGGCCATGTGGTGTAAATGTTAGTCACGTTTATTTTATGATAGGGTTGGCGACCAAATCCTGACAGTACAGTTGCTGTTGACACGGATAATTGAGTTGACGTGT AGTTTCCAAGTAGAAATTAAATTAGGAGACTTTAATAGTGGATCAAACGATTGAACTGATGGTGGGTCATTAAAANTCGGCATTCCTTGAAAAANGTGCAGG ] [+] EMBL SM135 [ AATTGTTTTTATTCCGAAAAGACGGTTAAGCTTTTTTCTAATGTATTGTCAAAGTCATACAAGAAAACTGTAGTTTATACAGGTTAGAAAGTATATACAGCAAAGATTACAATAGTATATATGGATTCGACATGTATTGGATTGTGAAAAGGGAATTATTTTGGATAAAACTTGACGGCCATGTGGTGTAAATGTTAGTCACGTTTATTTTATGAT ] consensusID : consensus_7693#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence [GCTGTTGACACGGATAATTGAGTTGACGTGTAGAGTTTCCAAGTAGAAATTAAATTAGGAGACTTTAATAGTGGATCAAACGATTGAACTGATGGTGGGTCATTAAAATTCGGCATTCCTTGAAATATGTGCAGGTTATTTATTATCAACGCAATAATAATAATTATGATTGCTTTTTAATAAGTTTGTGTCGTACATTTGTAGATCAGTTGGATTATTTTTAAGTTCTGCATGTAGCAGCAACAGAAATAGGATTATTCTATAATATAATGCATCATTATGTGGACCATTTAGGAATGTTGGTGGACCGTATTGCCAATTTTGACAACGTTTCTTATTACGATAAATTTGTAAAGGGAATCCGGTCAAACCATCAATTTT] [-] EMBL CD133705 [GCTGTTGACACGGATAATTGAGTTGACGTGTAGAGTTTCCAAGTAGAAATTAAATTAGGAGACTTTAATAGTGGATCAAACGATTGAACTGATGGTGGGTCATTAAAATTCGGCATTCCTTGAAATATGTGCAGGTTATTTATTATCAACGCAATAATAATAATTATGATTGCTTTTTAATAAGTTTGTGTCGTACATTTGTAGATCAGTTGGATTATTTTTAAGTTCTGCATGTAGCAGCAACAGAAATAGGATTATTCTATAATATAATGCATCATTATGTGGACCATTTAGGAATGTTGGTGGACCGTATTGCCAATTTTGACAACGTTTCTTATTACGATAAATTTGTAAAGGGAATCCGGTCAAACCATCAATTTT] consensusID : consensus_7693#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence [TTAGAAATAAGATACTGTGAAACACTTACCAATAAACTAACAACTGTCAATCCCATTCCGAGCATATATTCAGCGTATGCATCAATATAATCGACAAGTAGGTTAAAACAGCCCTTAGTAAAAAGAAAAATGAACATATTGTTATGGCTTAGGATTTTTGTATTTGAAGAACTGTATTTCAGCAGTTAAAATGCAAGGAGATGTCTTTTGATTGGTGATTTCTTATGACAAGGATTGTGGGGGAGTGAGGACTACTCACGAAACCATGTTATTGATGCAAGTCGCCCGGATAA] [+] EMBL CD163828 [TTAGAAATAAGATACTGTGAAACACTTACCAATAAACTAACAACTGTCAATCCCATTCCGAGCATATATTCAGCGTATGCATCAATATAATCGACAAGTAGGTTAAAACAGCCCTTAGTAAAAAGAAAAATGAACATATTGTTATGGCTTAGGATTTTTGTATTTGAAGAACTGTATTTCAGCAGTTAAAATGCAAGGAGATGTCTTTTGATTGGTGATTTCTTATGACAAGGATTGTGGGGGAGTGAGGACTACTCACGAAACCATGTTATTGATGCAAGTCGCCCGGATAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7693#0 TAAGCTTGTATTTATTGTAATCAATTGTTTTTATTCCGAAAAGACGGTTAAGCTTTTTTC 60 consensus_7693#1 ------------------------------------------------------------ consensus_7693#2 ------------------------------------------------------------ consensus_7693#0 TAATGTATTGTCAAAGTCATACAAGAAAACTGTAGTTTATACAGGTTAGAAAGTATATAC 120 consensus_7693#1 ------------------------------------------------------------ consensus_7693#2 ------------------------------------------------------------ consensus_7693#0 AGCAAAGATTACAATAGTATATATGCATTCGACATGTATTGGATTGTGAAAAGGGAATTA 180 consensus_7693#1 ------------------------------------------------------------ consensus_7693#2 ------------------------------------------------------------ consensus_7693#0 TTTTGGATAAAACTTGACGGCCATGTGGTGTAAATGTTAGTCACGTTTATTTTATGATAG 240 consensus_7693#1 ------------------------------------------------------------ consensus_7693#2 ------------------------------------------------------------ consensus_7693#0 GGTTGGCGACCAAATCCTGACAGTACAGTTGCTGTTGACACGGATAATTGAGTTGACGTG 300 consensus_7693#1 ------------------------------GCTGTTGACACGGATAATTGAGTTGACGTG 30 consensus_7693#2 ------------------------------------------------------------ consensus_7693#0 TAGAGTTTCCAAGTAGAAATTAAATTAGGAGACTTTAATAGTGGATCAAACGATTGAACT 360 consensus_7693#1 TAGAGTTTCCAAGTAGAAATTAAATTAGGAGACTTTAATAGTGGATCAAACGATTGAACT 90 consensus_7693#2 ------------------TTAGAAATAAGATACTGTGAAACA----CTTACCAATAAACT 38 * ** ** ** *** * * * * ** * * **** consensus_7693#0 GATGGTGGGTCATTAAAATTCGGCATTCCTTGAAATATGTGCAGGTTATTTATTATCAAC 420 consensus_7693#1 GATGGTGGGTCATTAAAATTCGGCATTCCTTGAAATATGTGCAGGTTATTTATTATCAAC 150 consensus_7693#2 AACAACTGTCAATCCCATTCCGAGCATATATTCAGCGTATGCA---TCAATATAATCGAC 95 * * ** * * ** * * * * **** * *** *** ** consensus_7693#0 GCAATAATAATAATTATGATTGCTTTTTAATAAGTTTGTGTCGTACATTTGTAGATCAGT 480 consensus_7693#1 GCAATAATAATAATTATGATTGCTTTTTAATAAGTTTGTGTCGTACATTTGTAGATCAGT 210 consensus_7693#2 AAGTAGGTTAAAACAGCCCTTAGTAAAAAGAAAAATGA--ACATATTGTTATGGCTTAGG 153 * * ** ** * * ** * * ** ** * * * ** consensus_7693#0 TGGATTATTTTT-AAGTTCTGCATGT-AGCAGCAACAGAAATAGGATTAT-CAATAAACT 537 consensus_7693#1 TGGATTATTTTT-AAGTTCTGCATGT-AGCAGCAACAGAAATAGGATTATTCTATAATAT 268 consensus_7693#2 ATTTTTGTATTTGAAGAACTGTATTTCAGCAGTTAAAATGCAAGGAGATGTCTTTTGATT 213 ** * *** *** *** ** * ***** * * **** * * * consensus_7693#0 AACA----ACTGTCAATCCCATT-CCG-AGCATATATTCAGCGTATGCATCAATATAATC 591 consensus_7693#1 AATGCATCATTATGTGGACCATT-TAGGAATGTTGGTGGACCGTAT-TGCCAATTTTGAC 326 consensus_7693#2 GGTGATTTCTTATGACAAGGATTGTGGGGGAGTGAGGACTACTCACGAAACCATGTTATT 273 * * *** * * * * * ** * consensus_7693#0 GACAAGTAG-GTTAAAACA------------------------------------ 609 consensus_7693#1 AACGTTTCTTATTACGATAAATTTGTAAAGGGAATCCGGTCAAACCATCAATTTT 381 consensus_7693#2 GATGCAAGTCGCCCGGATAA----------------------------------- 293 * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||