These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7700#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 744 fasta sequence [TCTAAAGGTAGTACTTCACCCAGTAAACAAGTACCACTTGTAGCATGGCTTGAACGCTTTTACGCTCATTTGCTTAGTAAATATACTTTGTACTGGTTTGAAATCTTGGTTCGTTCTGCATCCAATCTTCAGGAAATTGAAGAAACAGCAAACTCAGAAAATCTGAATCTGGTTGCCAATATCACAAGATTCCAACGAGAATCTAACGCACTAAATATCTCATTATTATTCGATACAACTTGTCAGTCATTTCCATTCCTTGGACATGGTTATGTTTTGAGAGGTTCTGTTGGTGATGCGCCAAAAGGAATTGAAAGTATTCCACCAATTTTTAATGCTCCATTGGGTAGTTCATTGTCTCCGGTTGATATTTACACAATTGTTATGCAAATCAACAGTACTCTTCATCTTAGTGGTGATGATAAAATTGATGTTAGTGATATTTTAAAACAACCTCGTTATGTATATGACGAGAAATTAAATCATACATATTATATTAAAAAATTAGAATGTCGTGTATTTTTAGCGCTGGTTTATGAAGGTTTGAAATCCCATAAAGATAAATTAATTAATGAATTTATATCAATGCTCACAGATACGATTTGTTTACATAAAGTGGTCAATCTGCTAAAACAGCACCGACAACAATTCTCTTCATCACCATCTACTGATCGAAGAAGTTTACGGTCGTTGTTTTTTCACTGATTTTCCCTACCGTTCTTTTTTTTATCAATTTCTAATCGT] [-] EMBL CD064220 [TCTAAAGGTAGTACTTCACCCAGTAAACAAGTACCACTTGTAGCATGGCTTGAACGCTTTTACGCTCATTTGCTTAGTAAATATACTTTGTACTGGTTTGAAATCTTGGTTCGTTCGGCAGGCTATTTTCA ] [+] EMBL CD084988 [ ACCACTTGTAGCATGGCTTGAACGCTTTTACGCTCATTTGCTTATTAAATATACTTTGTACTGGTTTGAAATCTTGGTTCGTTCTGCATCCAATCTTCAGGAAATTGAAGAAACAGCAAACTCAGAAAATCTGAATCTGGTTGCCAATATCACAAGATTCCAACGAGAATCTAACGCACTAAATATCTCATTATTATTCGATACAACTTGTCAGTCATTTCCATTCCTTGGACATGGTTATGTTTTGAGAGGTTCTGTTGGTGATGCGCCAAAAGGAATTGAAAGTATTCCACCAATTTTTAATGCTCCATTGGGTAGTTCATTGTCTCCGGTTGATATTTACACAATTGTTATGCAAATCAACAGTACTCTTCATCTTAGTGGTGATGATAAAATTGATGTTAGTGATATTTTAAAACAACCTCGTTATGTATATGACGAGAAATTAAATCATACATATTATATTAAAAAATTAGAATGTCGTGT ] [+] EMBL CD084861 [ ACCACTTGTAGCATGGCTTGAACGCTTTTACGCTCATTTGCTTAGTAAATATACTTTGTACTGGTTTGAAATCTTGGTTCGTTCTGCATCCAATCTTCAGGAAATTGAAGAAACAGCAAACTCAGAAAATCTGAATCTGGTTGCCAATATCACAAGATTCCAACGAGAATCTAACGCACTAAATATCTCATTATTATTCGATACAACTTGTCAGTCATTTCCATTCCTTGGACATGGTTATGTTTTGAAAGGTTCTGTGGGTNATGCGCCAAAAGGAATTGAAAGTATTCCACCAATTTTTAATGCTCCATTGGGTAGTTCATTGTCTCCGGTTGATATTTACACAATTGTTATGCAAATCAACAGTACTCTTCATCTTAGTGGTGATGATAAAATTGATGTTAGTGATATTTTAAAACAACCTCGTTATGTATATGACGAGAAAat ] [+] EMBL CD114918 [ TGAAAGTATTCCACCAATTTTTAATGCTCCATTGGGTAGTTCATTGTCTCCGGTTGATATTTACACAATTGTTATGCAAATCAACAGTACTCTTCATCTTAGTGGTGATGATAAAATTGATGTTAGTGATATTTTAAAACAACCTCGTTATGTATATGACGAGAAATTAAATCATACATATTATATTAAAAAATTAGAATGTCGTGTATTTTTAGCGCTGGTTTATGAAGGTTTGAAATCCCATAAAGATAAATTAATTAATGAATTTATATCAATGCTCACAGATACGATTTGTTTACATAAAGTGGTCAATCTGCTAAAACAGCACCGACAACAATTCTCTTCATCACCATCTACTGATCGAAGAAGTTTACGGTCGTTGTTTTTTCACTGATTTTCCCTACCGTTCTTTTTTTTATCAATTTCTAATCGT] consensusID : consensus_7700#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 318 fasta sequence [CACAAGATTCCAACGAGAATCTAACGCACTAAATATCTCATTATTATTCGATACAACTTGTCAGTCATTTCCATTCCTTGGACATGGTTATGTTTTGAGAGGTTCTGTTGGTGATGCGCCAAAAGGAATTGAAAGTATTCCACCAATTTTTAATGCTCCATTGGGTAGTTCATTGTCTCCGGGTTGATATTTACACATTTGTTATGCAATCAACAGTACTCCTCCATCTTAGGGGGGAATGAAAAAATTGATGGTAGTGATATTTTAAAACACCCTCTTTTTTTATATGCCGCGATATTTCCTCCCCCCTTTTATATA] [+] EMBL AW146512 [CACAAGATTCCAACGAGAATCTAACGCACTAAATATCTCATTATTATTCGATACAACTTGTCAGTCATTTCCATTCCTTGGACATGGTTATGTTTTGAGAGGTTCTGTTGGTGATGCGCCAAAAGGAATTGAAAGTATTCCACCAATTTTTAATGCTCCATTGGGTAGTTCATTGTCTCCGGGTTGATATTTACACATTTGTTATGCAATCAACAGTACTCCTCCATCTTAGGGGGGAATGAAAAAATTGATGGTAGTGATATTTTAAAACACCCTCTTTTTTTATATGCCGCGATATTTCCTCCCCCCTTTTATATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7700#0 TCTAAAGGTAGTACTTCACCCAGTAAACAAGTACCACTTGTAGCATGGCTTGAACGCTTT 60 consensus_7700#1 ------------------------------------------------------------ consensus_7700#0 TACGCTCATTTGCTTAGTAAATATACTTTGTACTGGTTTGAAATCTTGGTTCGTTCTGCA 120 consensus_7700#1 ------------------------------------------------------------ consensus_7700#0 TCCAATCTTCAGGAAATTGAAGAAACAGCAAACTCAGAAAATCTGAATCTGGTTGCCAAT 180 consensus_7700#1 ------------------------------------------------------------ consensus_7700#0 ATCACAAGATTCCAACGAGAATCTAACGCACTAAATATCTCATTATTATTCGATACAACT 240 consensus_7700#1 --CACAAGATTCCAACGAGAATCTAACGCACTAAATATCTCATTATTATTCGATACAACT 58 ********************************************************** consensus_7700#0 TGTCAGTCATTTCCATTCCTTGGACATGGTTATGTTTTGAGAGGTTCTGTTGGTGATGCG 300 consensus_7700#1 TGTCAGTCATTTCCATTCCTTGGACATGGTTATGTTTTGAGAGGTTCTGTTGGTGATGCG 118 ************************************************************ consensus_7700#0 CCAAAAGGAATTGAAAGTATTCCACCAATTTTTAATGCTCCATTGGGTAGTTCATTGTCT 360 consensus_7700#1 CCAAAAGGAATTGAAAGTATTCCACCAATTTTTAATGCTCCATTGGGTAGTTCATTGTCT 178 ************************************************************ consensus_7700#0 CCGG-TTGATATTTACACAATTGTTATGCAAATCAACAGTACTCTTC-ATCTTAGTGGTG 418 consensus_7700#1 CCGGGTTGATATTTACACATTTGTTATGCAA-TCAACAGTACTCCTCCATCTTAGGGGGG 237 **** ************** *********** ************ ** ******* ** * consensus_7700#0 A-TGATAAAATTGATGTTAGTGATATTTTAAAACAACCTCGTTATGTATATGACGAGAAA 477 consensus_7700#1 AATGAAAAAATTGATGGTAGTGATATTTTAAAACACCCTCTTTTTTTATATGCCGCGATA 297 * *** ********** ****************** **** ** * ****** ** ** * consensus_7700#0 TTAAATCATACATATTATATTAAAAAATTAGAATGTCGTGTATTTTTAGCGCTGGTTTAT 537 consensus_7700#1 TTTCCTCCCCCCTTTTATATA--------------------------------------- 318 ** ** * * ****** consensus_7700#0 GAAGGTTTGAAATCCCATAAAGATAAATTAATTAATGAATTTATATCAATGCTCACAGAT 597 consensus_7700#1 ------------------------------------------------------------ consensus_7700#0 ACGATTTGTTTACATAAAGTGGTCAATCTGCTAAAACAGCACCGACAACAATTCTCTTCA 657 consensus_7700#1 ------------------------------------------------------------ consensus_7700#0 TCACCATCTACTGATCGAAGAAGTTTACGGTCGTTGTTTTTTCACTGATTTTCCCTACCG 717 consensus_7700#1 ------------------------------------------------------------ consensus_7700#0 TTCTTTTTTTTATCAATTTCTAATCGT 744 consensus_7700#1 --------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||