These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7703#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 593 fasta sequence [TGGTACACAATCTGTCTATCCAGATCACATTTCTGTCACAACTACTCAACAAACAATAACTGCTCCAACAAAAGTTGTCAGTAATTTAAATGTTTTGACAAACACTAAAAAGACGAGTGAACTTACCGAAGTTCCTATGCAAAATGGATGGAAACCTGAGAAAATTAAACAAGATGCAGTAGATAGTGGTAATATGACTCAAGTGACTGCGACTGCACGAGTTTGGTATCAACCTAAATTATCCAGAGAAGAAGCTATAAGCATTTTACGTCAACAAGTTCCTGGAAGTTTCCTTATTCGTGATAGTACAACATACAAAGATGCTTTTGGTTTAGCAGTCAAGGTTGCTACACTTCCACCAAAAGTTACACCAAAATCTAGTTTTACCAAATTTGTCAGAAGCATTTTCAATGATCTTCAATCTGAACTAGTTAGACATTATTTAATAGAAGCGGTTAATACACCTACTAAAGGTGTACGCCTTAAAGGTTTTGCAAGTGAACCAGTATTTCCAAGTTTAGCTGCTCTAATCAACCGACATACACAAGATGCTTTAGCATTACCTTATCGATTGATTCTCCCAGCCATTCCAA] [+] EMBL CD126460 [TGGTACACAATCTGTCTATCCAGATCACATTTCTGTCACAACTACTCAACAAACAATAACTGCTCCAACAAAAGTTGTCAGTAATTTAAATGTTTTGACAAACACTAAAAAGACGAGTGAACTTACCGAAGTTCCTATGCAAAATGGATGGAAACCTGAGAAAATTAAACAAGATGCAGTAGATAGTGGTAATATGACTCAAGTGACTGCGACTGCACGAGTTTGGTATCAACCTAAATTATCCAGAGAAGAAGCTATAAGCATTTTACGTCAACAAGT ] [+] EMBL CD144826 [ AAGTGACTGCGACTGCACGAGTTTGGTATCAACCTAAATTATCCAGAGAAGAAGCTATAAGCATTTTACGTCAACAAGTTCCTGGAAGTTTCCTTATTCGTGATAGTACAACATACAAAGATGCTTTTGGTTTAGCAGTCAAGGTTGCTACACTTCCACCAAAAGTTACACCAAAATCTAGTTTTACCAAATTTGTCAGAAGCATTTTCAATGATCTTCAATCTGAACTAGTTAGACATTATTTAATAGAAGCGGTTAATACACCTACTAAAGGTGTACGCCTTAAAGGTTTTGCAAGTGAACCAGTATTTCCAAGTTTAGCTGCTCTAATCAACCGACATACACAAGATGCTTTAGCATTACCTTATCGATTGATTCTCCCAGCCATTCCA ] [-] EMBL CD144684 [ AGTGACTGCGACTGCACGAGTTTGGTATCAACCTAAATTATCCAGAGAAGAAGCTGTAAGCATTTTACGTCAACAAGTTCCTGGAAGTTTCCTTATTCGTGATAGTACAACATACAAAGATGCTTTTGGTTTAGCAGTCAAGGTTGTTACACTTCCACCAAAAGTTACACCAAAATCTAGTTTTACCAAATTTGTCAGAAGCATTTTCAATGATCTTCAATCTGAACTAGTTAGACATTATTTAATAGAAGCGGTTAATACACCTACTAAAGGTGTACGCCTTAAAGGTTTTGCAAGTGAACCAGTATTTCCAAGTTTAGCTGCTCTAATCAACCGACATACACAAGATGCTTTAGCATTACCTTGTCGATTGATTCTCCCAGCCATTCCAA] consensusID : consensus_7703#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 367 fasta sequence [ATTATCCAGAGAAGAAGCTATAAGCATTTTACGTCAACAAGTTCCTGGAAGTTTCCTTATTCGTGATAGTACAACATGCAAAGATGCTTTTGGTTTAGCAGTCAAGGTTGCTACACTTCCACCAAAAGTTACACCAAAATCTAATGATCTTCAATCTGAACTAGTTAGACATTATTTAATAGAAGCGGTTAATACACCTACTAAAGGTGTACGCCTTAAAGGTTTTGCAAGTGAACCAGTATTTCCAAGTTTAGCTGCTCTAATCAACCGACATACACAAGATGCTTTAGCATTACCTTGTCGATTGATTCTCCCAGCCATTCCAACTACACCATTACCACCTGGATATAAGCCTCCACCACAAATT] [+] EMBL CD169930 [ATTATCCAGAGAAGAAGCTATAAGCATTTTACGTCAACAAGTTCCTGGAAGTTTCCTTATTCGTGATAGTACAACATGCAAAGATGCTTTTGGTTTAGCAGTCAAGGTTGCTACACTTCCACCAAAAGTTACACCAAAATCTAATGATCTTCAATCTGAACTAGTTAGACATTATTTAATAGAAGCGGTTAATACACCTACTAAAGGTGTACGCCTTAAAGGTTTTGCAAGTGAACCAGTATTTCCAAGTTTAGCTGCTCTAATCAACCGACATACACAAGATGCTTTAGCATTACCTTGTCGATTGATTCTCCCAGCCATTCCAACTACACCATTACCACCTGGATATAAGCCTCCACCACAAATT] [+] EMBL CD116739 [ AAGCTATAAGCATTTTACGTCAACAAGTTCCTGGAAGTTTCCTTATTCGTGATAGTACAACATACAAAGATGCTTTTGGTTTAGCAGTCAAGGTTGCTACACTTCCACCAAAAGTTACACCAAAATCTAATGATCTTCAATCTGAACTAGTTAGACATTATTTAATAGAAGCGGTTAATACACCTACTAAAGGTGTACGCCTTAAAGGTTTTGCAAGTGAACCAGTATTTCCAAGTTTAGCTGCTCTAATCAACCGACATACACAAGATGCTTTAGCATTACCTTGTCGATTGATTCTCCCAGCCATTCCAACTA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7703#0 TGGTACACAATCTGTCTATCCAGATCACATTTCTGTCACAACTACTCAACAAACAATAAC 60 consensus_7703#1 ------------------------------------------------------------ consensus_7703#0 TGCTCCAACAAAAGTTGTCAGTAATTTAAATGTTTTGACAAACACTAAAAAGACGAGTGA 120 consensus_7703#1 ------------------------------------------------------------ consensus_7703#0 ACTTACCGAAGTTCCTATGCAAAATGGATGGAAACCTGAGAAAATTAAACAAGATGCAGT 180 consensus_7703#1 ------------------------------------------------------------ consensus_7703#0 AGATAGTGGTAATATGACTCAAGTGACTGCGACTGCACGAGTTTGGTATCAACCTAAATT 240 consensus_7703#1 ---------------------------------------------------------ATT 3 *** consensus_7703#0 ATCCAGAGAAGAAGCTATAAGCATTTTACGTCAACAAGTTCCTGGAAGTTTCCTTATTCG 300 consensus_7703#1 ATCCAGAGAAGAAGCTATAAGCATTTTACGTCAACAAGTTCCTGGAAGTTTCCTTATTCG 63 ************************************************************ consensus_7703#0 TGATAGTACAACATACAAAGATGCTTTTGGTTTAGCAGTCAAGGTTGCTACACTTCCACC 360 consensus_7703#1 TGATAGTACAACATGCAAAGATGCTTTTGGTTTAGCAGTCAAGGTTGCTACACTTCCACC 123 ************** ********************************************* consensus_7703#0 AAAAGTTACACCAAAATCTAGTTTTACCAAATTTGTCAGAAGCATTTTCAATGATCTTCA 420 consensus_7703#1 AAAAGTTACACCAAAATCTA------------------------------ATGATCTTCA 153 ******************** ********** consensus_7703#0 ATCTGAACTAGTTAGACATTATTTAATAGAAGCGGTTAATACACCTACTAAAGGTGTACG 480 consensus_7703#1 ATCTGAACTAGTTAGACATTATTTAATAGAAGCGGTTAATACACCTACTAAAGGTGTACG 213 ************************************************************ consensus_7703#0 CCTTAAAGGTTTTGCAAGTGAACCAGTATTTCCAAGTTTAGCTGCTCTAATCAACCGACA 540 consensus_7703#1 CCTTAAAGGTTTTGCAAGTGAACCAGTATTTCCAAGTTTAGCTGCTCTAATCAACCGACA 273 ************************************************************ consensus_7703#0 TACACAAGATGCTTTAGCATTACCTTATCGATTGATTCTCCCAGCCATTCCAA------- 593 consensus_7703#1 TACACAAGATGCTTTAGCATTACCTTGTCGATTGATTCTCCCAGCCATTCCAACTACACC 333 ************************** ************************** consensus_7703#0 ---------------------------------- consensus_7703#1 ATTACCACCTGGATATAAGCCTCCACCACAAATT 367 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||