These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7717#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 305 fasta sequence [GATTATACGTCTGTTACTCGAACATTGTTCATCAACACCATGGATAGTAGATGAGACACAACCCGATGGTTTGACTGCATTACACTTAGCTTCATTAAATGGAAATATGGAAGCTGTAGATCTTCTTTTGCAAGCGGGCGCTAGTCCAAATCTTGTAGTTCGTCGTCCAGCTGGCTTGTCTCCATTAAGTGGATGTGATGAAGAAAAATTAGGCTCTGTATTTACACCTCTTCATTTGGCTGTTCACAAAGCACATCCAGATGTTGTATGCTTATTACTATGTTATAGAGCTAGAGCGGCTTGTC] [+] EMBL CD189568 [GATTATACGTCTGTTACTCGAACATTGTTCATCAACACCATGGATAGTAGATGAGACACAACCCGATGGTTTGACTGCATTACACTTAGCTTCATTAAATGGAAATATGGAAGCTGTAGATCTTCTTTTGCAAGCGGGCGCTAGTCCAAATCTTGTAGTTCGTCGTCCAGCTGGCTTGCCTCCATTAAGGGGATGTGATGAAGAAAAATTAGGCTCTGTATTTACACCTCTTCATTTGGCTGGTCACAAAGCACATCCAGATGTTGTATGCTTATTGCTATGTTATAAACCTAGAGCGGCTTGg ] [-] EMBL CD189028 [ ATTATACGTCTGTTACTCGAACATTGTTCATCAACACCATGGATAGTAGATGAGACACAACCCGATGGTTTGACTGCATTACACTTAGCTTCATTAAATGGAAATATGGAAGCTGTAGATCTTCTTTTGCAAGCGGGCGCTAGTCCAAATCTTGTAGTTCGTCGTCCAGCTGGCTTGTCTCCATTAAGTGGATGTGATGAAGAAAAATTAGGCTCTGTATTTACACCTCTTCATTTGGCTGTTCACAAAGCACATCCAGATGTTGTACGCTTATTACTATGTTATAGAGCTAGAGCGGCTTGTC] [-] EMBL CD189958 [ ATTATACGTCTGTTACTCGAACATTGTTCATCAACACCATGGATAGTAGATGAGACACAGCCCGATGGTTTGACTGCATTACACTTAGCTTCATTAAATGGAAATATGGAAGCTGTAGATCTTCTTTTGCAAGCGGGCGCTAGTCCAAATCTTGTAGTTCGTCGTCCAGCTGGCTTGTCTCCATTAAGTGGATGTGATGAAGAAAAATTAGGCTCTGTATTTACACCTCTTCATTTGGCTGTTCACAAAGCACATCCAGATGCTGTATGCTTATTACTATGTTATAGAGCTAGAGCGGCTTGTC] consensusID : consensus_7717#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 118 fasta sequence [GACATTTGCACCCTGGGACTCGTGTACTTGTCCAAGAGCATTTAGAGCTAGTTGCATTGGACTACGTCCTGCTCCACTGCGACAAGCCGCTCTAGCTCTATAACATAGTAATAAGCAT] [+] EMBL CD134869 [GACATTTGCACCCTGGGACTCGTGTACTTGTCCAAGAGCATTTAGAGCTAGTTGCATTGGACTACGTCCTGCTCCACTGCGACAAGCCGCTCTAGCTCTATAACATAGTAATAAGCAT] [+] EMBL CD134864 [GACATTTGCACCCTGGGACTCGTGTACTTGTCCAAGAGCATTTAGAGCTAGTTGCATTGGACTACGTCCTGCTCCACTGCGACAAGCCGCTCTAGCTCTATAACATAGTAATAAGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7717#0 ---GATTATACGTCTGTTACTCGAACA-TTGTTCATCAACACC-ATGGATAGTAG-ATGA 54 consensus_7717#1 GACATTTGCAC-CCTGGGACTCGTGTACTTGTCCAAGAGCATTTAGAGCTAGTTGCATTG 59 ** ** *** ***** * **** ** * ** * * **** * ** consensus_7717#0 GAC-ACAACCCGATGGTTTGACTGCATTACACT-TAGCTTCATTAAATGGAAATATGGAA 112 consensus_7717#1 GACTACGTCCTGCTCCACTG-CGACAAGCCGCTCTAGCTCTATAACATAGTAATAAGCAT 118 *** ** ** * * ** * ** * ** ***** ** * ** * **** * * consensus_7717#0 GCTGTAGATCTTCTTTTGCAAGCGGGCGCTAGTCCAAATCTTGTAGTTCGTCGTCCAGCT 172 consensus_7717#1 ------------------------------------------------------------ consensus_7717#0 GGCTTGTCTCCATTAAGTGGATGTGATGAAGAAAAATTAGGCTCTGTATTTACACCTCTT 232 consensus_7717#1 ------------------------------------------------------------ consensus_7717#0 CATTTGGCTGTTCACAAAGCACATCCAGATGTTGTATGCTTATTACTATGTTATAGAGCT 292 consensus_7717#1 ------------------------------------------------------------ consensus_7717#0 AGAGCGGCTTGTC 305 consensus_7717#1 ------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||